Wall clock time and date at job start Tue Mar 31 2020 18:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.46946 * 2 1 4 4 C 1.46900 * 110.99897 * 164.34889 * 3 2 1 5 5 C 1.50699 * 109.46815 * 287.67779 * 4 3 2 6 6 C 1.38289 * 119.92367 * 90.00164 * 5 4 3 7 7 C 1.38106 * 120.07260 * 180.24567 * 6 5 4 8 8 C 1.38908 * 119.92466 * 359.46198 * 7 6 5 9 9 N 1.39679 * 120.07620 * 180.28872 * 8 7 6 10 10 C 1.46494 * 120.00498 * 180.24663 * 9 8 7 11 11 C 1.46504 * 119.99404 * 0.24965 * 9 8 7 12 12 C 1.50703 * 109.47129 * 90.00369 * 11 9 8 13 13 H 1.08000 * 119.99876 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99933 * 179.97438 * 12 11 9 15 15 N 1.31523 * 119.99873 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00258 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47570 * 89.99888 * 16 14 12 18 18 H 1.48500 * 109.47179 * 210.00124 * 16 14 12 19 19 H 1.48503 * 109.46894 * 329.99717 * 16 14 12 20 20 C 1.38911 * 119.85412 * 0.53466 * 8 7 6 21 21 C 1.38110 * 119.92138 * 359.73642 * 20 8 7 22 22 C 1.46900 * 111.00115 * 288.30231 * 3 2 1 23 23 H 1.09001 * 109.46892 * 58.24089 * 22 3 2 24 24 C 1.53001 * 109.47263 * 178.24083 * 22 3 2 25 25 C 1.50701 * 109.46959 * 298.24233 * 22 3 2 26 26 O 1.20819 * 120.00080 * 342.53724 * 25 22 3 27 27 O 1.34229 * 120.00040 * 162.54491 * 25 22 3 28 28 C 1.45199 * 117.00155 * 179.97438 * 27 25 22 29 29 H 1.09007 * 109.47281 * 307.32542 * 1 2 3 30 30 H 1.08997 * 109.47374 * 67.32859 * 1 2 3 31 31 H 1.08999 * 109.46911 * 187.32684 * 1 2 3 32 32 H 1.08998 * 109.47178 * 240.00571 * 2 1 3 33 33 H 1.09001 * 109.47487 * 120.00165 * 2 1 3 34 34 H 1.09004 * 109.46846 * 167.68305 * 4 3 2 35 35 H 1.08992 * 109.47132 * 47.68073 * 4 3 2 36 36 H 1.07997 * 119.96334 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.03659 * 179.72029 * 7 6 5 38 38 H 1.09008 * 109.46815 * 90.00021 * 10 9 8 39 39 H 1.08997 * 109.47346 * 209.99997 * 10 9 8 40 40 H 1.09008 * 109.46865 * 330.00619 * 10 9 8 41 41 H 1.09003 * 109.46883 * 209.99649 * 11 9 8 42 42 H 1.08994 * 109.47671 * 329.99797 * 11 9 8 43 43 H 0.97003 * 119.99849 * 180.02562 * 15 14 12 44 44 H 1.07998 * 120.03968 * 179.70580 * 20 8 7 45 45 H 1.07995 * 119.95954 * 179.97438 * 21 20 8 46 46 H 1.09007 * 109.46995 * 59.99750 * 24 22 3 47 47 H 1.08998 * 109.47474 * 179.97438 * 24 22 3 48 48 H 1.08997 * 109.46923 * 300.00300 * 24 22 3 49 49 H 1.08996 * 109.47034 * 179.97438 * 28 27 25 50 50 H 1.08998 * 109.47402 * 299.99914 * 28 27 25 51 51 H 1.09000 * 109.47196 * 59.99934 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4401 1.4412 0.3700 5 6 3.5876 1.1527 1.8417 6 6 3.7639 -0.1485 2.2754 7 6 3.8943 -0.4170 3.6238 8 6 3.8594 0.6231 4.5440 9 7 3.9970 0.3558 5.9080 10 6 3.9545 1.4533 6.8775 11 6 4.1838 -1.0221 6.3692 12 6 5.6560 -1.3411 6.4154 13 1 6.3800 -0.5925 6.1294 14 6 6.0786 -2.5887 6.8227 15 7 7.3633 -2.8672 6.8626 16 14 4.8264 -3.8834 7.3180 17 1 4.4377 -4.6780 6.1253 18 1 5.4214 -4.7823 8.3393 19 1 3.6246 -3.2189 7.8833 20 6 3.6822 1.9290 4.1050 21 6 3.5468 2.1899 2.7555 22 6 1.7890 2.0249 -1.3020 23 1 0.7241 2.0039 -1.5337 24 6 2.2710 3.4761 -1.2496 25 6 2.5501 1.2811 -2.3691 26 8 3.4479 0.5336 -2.0609 27 8 2.2305 1.4490 -3.6619 28 6 3.0062 0.7011 -4.6352 29 1 -0.3634 0.6231 0.8172 30 1 -0.3634 0.3961 -0.9482 31 1 -0.3633 -1.0193 0.1311 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8330 2.4346 0.1533 35 1 3.9945 0.6982 -0.2033 36 1 3.7952 -0.9562 1.5591 37 1 4.0274 -1.4339 3.9622 38 1 2.9255 1.6145 7.1989 39 1 4.5693 1.1994 7.7409 40 1 4.3370 2.3627 6.4138 41 1 3.7567 -1.1327 7.3659 42 1 3.6853 -1.7060 5.6823 43 1 7.6606 -3.7451 7.1488 44 1 3.6499 2.7394 4.8181 45 1 3.4086 3.2049 2.4136 46 1 3.3359 3.4971 -1.0179 47 1 2.1003 3.9508 -2.2158 48 1 1.7205 4.0140 -0.4778 49 1 2.6457 0.9276 -5.6386 50 1 4.0567 0.9802 -4.5546 51 1 2.8981 -0.3664 -4.4431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231821999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:47 Heat of formation + Delta-G solvation = -52.804141 kcal Electronic energy + Delta-G solvation = -29497.409970 eV Core-core repulsion = 25589.925482 eV Total energy + Delta-G solvation = -3907.484488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03015 -40.50814 -39.04764 -37.41873 -36.83405 -34.74430 -33.31007 -32.43629 -31.96017 -30.27661 -29.57966 -28.65581 -27.28788 -25.88286 -24.68526 -23.92964 -23.04500 -22.74324 -21.19553 -20.89301 -19.09222 -18.79359 -18.15802 -17.73220 -17.31535 -16.97898 -16.65186 -16.38364 -16.20694 -15.67429 -15.40027 -15.05128 -14.99498 -14.78031 -14.46167 -14.37266 -14.32768 -14.20842 -13.74103 -13.37481 -13.36290 -13.18204 -13.09768 -13.06655 -12.87087 -12.82182 -12.62931 -12.50607 -12.41137 -12.15719 -12.05169 -11.88982 -11.79270 -11.78208 -11.69350 -11.51404 -11.38229 -10.83726 -10.40039 -9.65709 -9.36934 -8.34861 -7.89710 -6.39970 0.69910 0.82778 1.10059 1.32609 1.33486 1.44183 1.75263 2.29081 2.55020 2.73749 2.99107 3.24467 3.76895 3.91633 3.95746 4.04818 4.13047 4.21948 4.24498 4.26679 4.27918 4.40459 4.44396 4.49191 4.59521 4.64872 4.66648 4.70755 4.73099 4.77318 4.82158 4.84050 4.91223 4.94822 5.00436 5.05380 5.08465 5.10593 5.29400 5.29730 5.33916 5.44486 5.45701 5.60114 5.65301 5.85466 5.95416 6.03727 6.09038 6.22378 6.59321 6.69554 6.70279 6.88192 7.25555 8.82702 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.002654 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.150967 B =10545.945290 C =11163.477077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 N -0.494 5.494 4 C 0.092 3.908 5 C -0.149 4.149 6 C -0.070 4.070 7 C -0.215 4.215 8 C 0.212 3.788 9 N -0.629 5.629 10 C 0.097 3.903 11 C 0.232 3.768 12 C -0.535 4.535 13 H 0.024 0.976 14 C 0.011 3.989 15 N -0.947 5.947 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.242 1.242 20 C -0.213 4.213 21 C -0.047 4.047 22 C 0.088 3.912 23 H 0.139 0.861 24 C -0.141 4.141 25 C 0.431 3.569 26 O -0.534 6.534 27 O -0.362 6.362 28 C 0.028 3.972 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.027 0.973 43 H 0.268 0.732 44 H 0.136 0.864 45 H 0.146 0.854 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.132 0.868 50 H 0.057 0.943 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.918 13.325 -20.146 29.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 N -0.217 5.217 4 C -0.034 4.034 5 C -0.152 4.152 6 C -0.090 4.090 7 C -0.238 4.238 8 C 0.108 3.892 9 N -0.337 5.337 10 C -0.045 4.045 11 C 0.109 3.891 12 C -0.574 4.574 13 H 0.043 0.957 14 C -0.187 4.187 15 N -0.587 5.587 16 Si 0.769 3.231 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.165 1.165 20 C -0.236 4.236 21 C -0.066 4.066 22 C -0.023 4.023 23 H 0.157 0.843 24 C -0.198 4.198 25 C 0.273 3.727 26 O -0.424 6.424 27 O -0.277 6.277 28 C -0.066 4.066 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.164 0.836 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.150 0.850 50 H 0.076 0.924 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.772 13.188 -19.466 28.881 hybrid contribution 1.242 -2.040 -0.173 2.394 sum -15.529 11.149 -19.639 27.407 Atomic orbital electron populations 1.21744 0.93026 1.02312 1.02706 1.22307 0.97305 0.88836 1.00848 1.62684 1.17849 1.17796 1.23371 1.21206 0.88357 1.02759 0.91109 1.19467 1.07649 0.92614 0.95441 1.20750 0.97637 0.96817 0.93763 1.20716 1.11193 0.98182 0.93714 1.18176 0.92871 0.94272 0.83889 1.46683 1.76655 1.07272 1.03095 1.21639 1.01249 0.89548 0.92107 1.19322 0.94128 0.80657 0.94970 1.21673 0.92499 0.98599 1.44590 0.95742 1.25883 0.97264 1.00678 0.94900 1.70073 1.16380 1.23076 1.49180 0.85733 0.79704 0.78788 0.78889 1.19261 1.20441 1.16503 1.20837 1.11576 0.93950 0.97189 1.20888 0.95346 0.99236 0.91162 1.22100 1.01629 0.95686 0.82868 0.84335 1.21913 1.02050 0.90852 1.04975 1.26138 0.82236 0.80012 0.84275 1.90653 1.31557 1.37688 1.82522 1.86550 1.59223 1.64779 1.17186 1.23467 0.95910 0.95716 0.91498 0.91536 0.91679 0.91908 0.95378 0.91358 0.88790 0.92949 0.87264 0.88409 0.91958 0.92632 0.90667 0.94561 0.95521 0.92333 0.84636 0.83622 0.92358 0.89352 0.88384 0.85023 0.92404 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.80 71.98 0.71 -1.79 16 2 C 0.03 0.81 5.25 86.30 0.45 1.26 16 3 N -0.49 -10.61 4.42 -879.93 -3.89 -14.50 16 4 C 0.09 2.36 4.21 85.56 0.36 2.72 16 5 C -0.15 -4.57 5.10 -19.84 -0.10 -4.67 16 6 C -0.07 -2.55 8.10 22.25 0.18 -2.37 16 7 C -0.22 -9.08 9.21 22.40 0.21 -8.88 16 8 C 0.21 8.62 6.55 38.21 0.25 8.87 16 9 N -0.63 -26.80 2.99 -726.54 -2.17 -28.97 16 10 C 0.10 3.28 10.19 127.77 1.30 4.58 16 11 C 0.23 11.23 3.99 85.63 0.34 11.57 16 12 C -0.53 -31.36 9.94 25.60 0.25 -31.10 16 13 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 14 C 0.01 0.62 5.47 84.65 0.46 1.08 16 15 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 16 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 20 C -0.21 -7.01 9.21 22.40 0.21 -6.80 16 21 C -0.05 -1.36 9.69 22.25 0.22 -1.14 16 22 C 0.09 1.43 2.78 44.17 0.12 1.55 16 23 H 0.14 1.70 6.78 -2.39 -0.02 1.68 16 24 C -0.14 -1.66 8.94 71.98 0.64 -1.02 16 25 C 0.43 8.86 6.20 71.24 0.44 9.30 16 26 O -0.53 -14.70 11.99 21.98 0.26 -14.43 16 27 O -0.36 -6.26 10.57 -51.40 -0.54 -6.81 16 28 C 0.03 0.37 10.56 113.37 1.20 1.56 16 29 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.06 0.92 7.03 -2.39 -0.02 0.90 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.03 0.72 5.99 -2.39 -0.01 0.71 16 33 H 0.07 1.90 5.39 -2.39 -0.01 1.89 16 34 H 0.09 2.08 5.46 -2.38 -0.01 2.07 16 35 H 0.05 1.61 5.59 -2.39 -0.01 1.59 16 36 H 0.11 3.80 7.55 -2.91 -0.02 3.78 16 37 H 0.10 4.58 6.14 -2.91 -0.02 4.56 16 38 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 40 H 0.07 2.22 6.20 -2.38 -0.01 2.20 16 41 H 0.04 1.68 7.13 -2.39 -0.02 1.67 16 42 H 0.03 1.30 5.62 -2.39 -0.01 1.28 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.14 3.81 6.14 -2.91 -0.02 3.79 16 45 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 46 H 0.06 0.81 6.05 -2.38 -0.01 0.79 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 49 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 51 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 Total: -1.00 -74.11 396.00 3.95 -70.16 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.87 Total: 23.86 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 7.24 Total: -15.27 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.76 Total: -103.21 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.28 Total: -21.24 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -74.11 3.95 -70.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231821999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.357 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds