Wall clock time and date at job start Tue Mar 31 2020 19:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47541 * 2 1 4 4 C 1.35980 * 117.00000 * 180.02562 * 3 2 1 5 5 C 1.38717 * 120.00075 * 359.97438 * 4 3 2 6 6 C 1.38118 * 119.99870 * 179.69918 * 5 4 3 7 7 C 1.38715 * 120.00080 * 0.25914 * 6 5 4 8 8 O 1.35979 * 120.00285 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99857 * 0.02562 * 8 7 6 10 10 C 1.38678 * 120.00104 * 0.04155 * 7 6 5 11 11 C 1.38162 * 119.99966 * 359.97438 * 10 7 6 12 12 C 1.50700 * 119.99908 * 179.97438 * 11 10 7 13 13 N 1.46898 * 109.47252 * 259.99604 * 12 11 10 14 14 C 1.46950 * 111.00420 * 293.80440 * 13 12 11 15 15 C 1.53048 * 109.36403 * 176.80897 * 14 13 12 16 16 N 1.46957 * 109.36510 * 58.40335 * 15 14 13 17 17 C 1.46898 * 111.00276 * 176.80921 * 16 15 14 18 18 C 1.50704 * 109.47278 * 293.80090 * 17 16 15 19 19 H 1.08003 * 119.99844 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99994 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00163 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99617 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47403 * 59.99784 * 22 20 18 24 24 H 1.48507 * 109.46655 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47170 * 299.99735 * 22 20 18 26 26 C 1.46959 * 110.87978 * 300.67713 * 16 15 14 27 27 C 1.46956 * 110.99901 * 169.99832 * 13 12 11 28 28 H 1.09002 * 109.46803 * 300.00512 * 1 2 3 29 29 H 1.09001 * 109.46832 * 59.99623 * 1 2 3 30 30 H 1.08999 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47079 * 239.99933 * 2 1 3 32 32 H 1.08998 * 109.47109 * 119.99935 * 2 1 3 33 33 H 1.08002 * 120.00341 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.00025 * 180.27454 * 6 5 4 35 35 H 1.08997 * 109.47244 * 59.99416 * 9 8 7 36 36 H 1.09001 * 109.47143 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.46569 * 299.99701 * 9 8 7 38 38 H 1.08001 * 120.00441 * 179.97438 * 10 7 6 39 39 H 1.08996 * 109.47024 * 20.00265 * 12 11 10 40 40 H 1.09000 * 109.46329 * 140.00204 * 12 11 10 41 41 H 1.08998 * 109.48926 * 296.78217 * 14 13 12 42 42 H 1.09004 * 109.48940 * 56.84520 * 14 13 12 43 43 H 1.08996 * 109.49215 * 298.43455 * 15 14 13 44 44 H 1.09003 * 109.50894 * 178.37905 * 15 14 13 45 45 H 1.09005 * 109.46920 * 53.79733 * 17 16 15 46 46 H 1.08995 * 109.47134 * 173.79871 * 17 16 15 47 47 H 0.97002 * 119.99994 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.48778 * 299.35834 * 26 16 15 49 49 H 1.08990 * 109.48939 * 179.28512 * 26 16 15 50 50 H 1.09003 * 109.49137 * 303.16306 * 27 13 12 51 51 H 1.09004 * 109.48708 * 63.22805 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5253 -0.0005 5 6 4.1994 0.4252 -0.0005 6 6 5.5687 0.6061 -0.0074 7 6 6.0990 1.8879 -0.0088 8 8 7.4470 2.0660 -0.0160 9 6 8.2570 0.8887 -0.0225 10 6 5.2543 2.9877 -0.0025 11 6 3.8846 2.8068 0.0047 12 6 2.9667 4.0020 0.0121 13 7 2.4852 4.2411 1.3791 14 6 1.6245 3.1405 1.8344 15 6 1.2096 3.3882 3.2866 16 7 0.5069 4.6755 3.3798 17 6 0.0254 4.9148 4.7469 18 6 -1.0386 3.9037 5.0889 19 1 -1.3284 3.1583 4.3631 20 6 -1.6428 3.9310 6.3279 21 7 -1.2902 4.8391 7.2115 22 14 -2.9620 2.6782 6.7515 23 1 -2.3928 1.3097 6.6599 24 1 -3.4487 2.9200 8.1335 25 1 -4.0929 2.8087 5.7980 26 6 1.3676 5.7762 2.9245 27 6 1.7826 5.5285 1.4723 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7866 -0.5728 0.0003 34 1 6.2265 -0.2504 -0.0118 35 1 8.0346 0.2995 -0.9121 36 1 9.3096 1.1718 -0.0284 37 1 8.0445 0.2968 0.8678 38 1 5.6671 3.9857 -0.0032 39 1 3.5094 4.8790 -0.3407 40 1 2.1175 3.8118 -0.6442 41 1 0.7356 3.0900 1.2057 42 1 2.1712 2.1999 1.7679 43 1 2.0967 3.4115 3.9194 44 1 0.5477 2.5879 3.6177 45 1 0.8557 4.8191 5.4465 46 1 -0.3927 5.9191 4.8143 47 1 -1.7150 4.8580 8.0834 48 1 2.2566 5.8266 3.5531 49 1 0.8209 6.7168 2.9910 50 1 2.4446 6.3289 1.1417 51 1 0.8954 5.5052 0.8395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232381802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:55 Heat of formation + Delta-G solvation = -31.098591 kcal Electronic energy + Delta-G solvation = -29945.313907 eV Core-core repulsion = 26038.770642 eV Total energy + Delta-G solvation = -3906.543265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78609 -39.26778 -38.37737 -36.70972 -34.97501 -32.64019 -31.86578 -31.44801 -30.25924 -29.57046 -27.94013 -27.25157 -25.77907 -24.30903 -23.65277 -22.80396 -21.73168 -21.38131 -20.86188 -19.02084 -18.22265 -17.68793 -16.74737 -16.56283 -16.24677 -15.83951 -15.43688 -14.96563 -14.70844 -14.54218 -14.48525 -14.09947 -13.96349 -13.67818 -13.45924 -13.34174 -12.97323 -12.94517 -12.77598 -12.49475 -12.36601 -12.05385 -11.87803 -11.70260 -11.63249 -11.45947 -11.25392 -11.08695 -10.82811 -10.77801 -10.56677 -10.53405 -10.49193 -10.22366 -10.09141 -9.58521 -9.13314 -9.01493 -8.38539 -7.98689 -7.75417 -7.11659 -5.97608 -3.98627 1.12154 1.37964 3.07595 3.20723 3.35497 3.39378 3.42185 3.55858 4.40326 4.46263 4.54292 4.61890 4.81939 4.82666 4.89998 4.91234 4.99743 5.05986 5.10279 5.12311 5.21033 5.31904 5.37146 5.37801 5.50943 5.60359 5.67022 5.73087 5.73943 5.76275 5.90980 5.99586 6.03612 6.08704 6.15878 6.17197 6.20778 6.28545 6.39482 6.52327 6.56977 6.75826 6.83338 7.16419 7.31706 7.37339 7.42500 7.44996 7.53030 7.86198 8.17253 8.30839 8.63885 9.08799 9.65034 11.13361 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.003013 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.450833 B = 9291.406104 C =10052.756215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.304 6.304 4 C 0.104 3.896 5 C -0.171 4.171 6 C -0.171 4.171 7 C 0.088 3.912 8 O -0.319 6.319 9 C 0.029 3.971 10 C -0.095 4.095 11 C -0.063 4.063 12 C 0.102 3.898 13 N -0.534 5.534 14 C 0.062 3.938 15 C 0.067 3.933 16 N -0.538 5.538 17 C 0.194 3.806 18 C -0.505 4.505 19 H 0.061 0.939 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.058 3.942 27 C 0.062 3.938 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.137 0.863 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.082 0.918 45 H -0.010 1.010 46 H 0.029 0.971 47 H 0.261 0.739 48 H 0.029 0.971 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.588 -9.545 -18.713 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.219 6.219 4 C 0.059 3.941 5 C -0.189 4.189 6 C -0.191 4.191 7 C 0.043 3.957 8 O -0.233 6.233 9 C -0.066 4.066 10 C -0.115 4.115 11 C -0.064 4.064 12 C -0.025 4.025 13 N -0.259 5.259 14 C -0.065 4.065 15 C -0.061 4.061 16 N -0.263 5.263 17 C 0.069 3.931 18 C -0.544 4.544 19 H 0.080 0.920 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.725 3.275 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.202 1.202 26 C -0.072 4.072 27 C -0.066 4.066 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.155 0.845 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.100 0.900 45 H 0.008 0.992 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.048 0.952 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.472 -9.151 -18.514 25.218 hybrid contribution -0.534 -1.272 0.453 1.452 sum 13.938 -10.424 -18.061 25.082 Atomic orbital electron populations 1.21783 0.92519 1.02720 1.04051 1.22751 0.96159 0.82282 1.00900 1.86304 1.18348 1.28728 1.88471 1.18644 0.82812 0.93326 0.99340 1.20964 0.93383 0.98097 1.06498 1.20954 0.95548 0.95925 1.06624 1.18829 0.82769 0.93516 1.00545 1.86074 1.14392 1.33376 1.89420 1.23001 0.94954 0.87556 1.01106 1.20096 0.90584 0.97935 1.02848 1.18935 0.92947 0.92341 1.02190 1.20823 0.96372 0.94580 0.90742 1.62249 1.39708 1.03193 1.20729 1.22430 0.94630 0.93362 0.96086 1.22021 0.96274 0.93871 0.93970 1.62280 1.35454 1.00461 1.28148 1.19687 0.94374 0.97506 0.81580 1.21124 1.19943 1.14634 0.98656 0.92038 1.24987 0.97268 0.96036 0.96353 1.69953 1.42965 1.34552 1.06434 0.86582 0.82042 0.81618 0.77273 1.20326 1.21390 1.20207 1.22044 0.95465 0.95739 0.93906 1.22151 0.96176 0.90662 0.97656 0.90762 0.91692 0.90625 0.92579 0.92103 0.85341 0.85515 0.92959 0.88432 0.92801 0.84522 0.90259 0.93453 0.94138 0.90294 0.95778 0.90001 0.99183 0.95321 0.92930 0.95244 0.91135 0.91314 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.53 5.46 37.16 0.20 0.74 16 3 O -0.30 -3.90 6.26 -19.68 -0.12 -4.02 16 4 C 0.10 1.34 5.41 -39.24 -0.21 1.12 16 5 C -0.17 -1.88 9.03 -39.45 -0.36 -2.24 16 6 C -0.17 -1.81 9.03 -39.45 -0.36 -2.17 16 7 C 0.09 1.04 6.68 -39.24 -0.26 0.78 16 8 O -0.32 -3.52 10.50 -19.67 -0.21 -3.73 16 9 C 0.03 0.20 9.81 101.05 0.99 1.19 16 10 C -0.10 -1.19 9.60 -39.45 -0.38 -1.57 16 11 C -0.06 -0.83 5.17 -104.49 -0.54 -1.37 16 12 C 0.10 1.38 4.99 -4.98 -0.02 1.35 16 13 N -0.53 -8.65 4.70 -235.92 -1.11 -9.76 16 14 C 0.06 1.10 4.15 -3.77 -0.02 1.08 16 15 C 0.07 1.42 5.43 -3.77 -0.02 1.40 16 16 N -0.54 -12.28 4.70 -235.91 -1.11 -13.39 16 17 C 0.19 5.24 4.72 -4.98 -0.02 5.22 16 18 C -0.50 -14.49 8.47 -34.44 -0.29 -14.78 16 19 H 0.06 1.74 7.13 -52.48 -0.37 1.36 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 22 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.06 1.11 5.61 -3.77 -0.02 1.09 16 27 C 0.06 0.99 5.61 -3.77 -0.02 0.97 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 34 H 0.13 1.02 6.29 -52.49 -0.33 0.69 16 35 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 38 H 0.14 1.56 8.04 -52.49 -0.42 1.13 16 39 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 40 H 0.05 0.66 7.82 -51.93 -0.41 0.25 16 41 H 0.04 0.75 7.89 -51.93 -0.41 0.34 16 42 H 0.08 1.34 4.72 -51.93 -0.24 1.10 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.83 6.79 -51.93 -0.35 1.48 16 45 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 46 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 50 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 51 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -32.50 396.30 -10.55 -43.05 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.64 Total: -1.73 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -1.05 Total: -6.77 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -1.48 Total: -49.65 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.33 Total: -7.75 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.50 -10.55 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232381802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.951 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds