Wall clock time and date at job start Tue Mar 31 2020 19:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47541 * 2 1 4 4 C 1.35980 * 117.00000 * 180.02562 * 3 2 1 5 5 C 1.38717 * 120.00075 * 359.97438 * 4 3 2 6 6 C 1.38118 * 119.99870 * 179.69918 * 5 4 3 7 7 C 1.38715 * 120.00080 * 0.25914 * 6 5 4 8 8 O 1.35979 * 120.00285 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99857 * 0.02562 * 8 7 6 10 10 C 1.38678 * 120.00104 * 0.04155 * 7 6 5 11 11 C 1.38162 * 119.99966 * 359.97438 * 10 7 6 12 12 C 1.50700 * 119.99908 * 179.97438 * 11 10 7 13 13 N 1.46898 * 109.47252 * 259.99604 * 12 11 10 14 14 C 1.46950 * 111.00420 * 293.80440 * 13 12 11 15 15 C 1.53048 * 109.36403 * 176.80897 * 14 13 12 16 16 N 1.46957 * 109.36510 * 58.40335 * 15 14 13 17 17 C 1.46898 * 111.00276 * 176.80921 * 16 15 14 18 18 C 1.50704 * 109.47278 * 293.80090 * 17 16 15 19 19 H 1.08003 * 119.99844 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99994 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00163 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99617 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47403 * 59.99784 * 22 20 18 24 24 H 1.48507 * 109.46655 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47170 * 299.99735 * 22 20 18 26 26 C 1.46959 * 110.87978 * 300.67713 * 16 15 14 27 27 C 1.46956 * 110.99901 * 169.99832 * 13 12 11 28 28 H 1.09002 * 109.46803 * 300.00512 * 1 2 3 29 29 H 1.09001 * 109.46832 * 59.99623 * 1 2 3 30 30 H 1.08999 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47079 * 239.99933 * 2 1 3 32 32 H 1.08998 * 109.47109 * 119.99935 * 2 1 3 33 33 H 1.08002 * 120.00341 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.00025 * 180.27454 * 6 5 4 35 35 H 1.08997 * 109.47244 * 59.99416 * 9 8 7 36 36 H 1.09001 * 109.47143 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.46569 * 299.99701 * 9 8 7 38 38 H 1.08001 * 120.00441 * 179.97438 * 10 7 6 39 39 H 1.08996 * 109.47024 * 20.00265 * 12 11 10 40 40 H 1.09000 * 109.46329 * 140.00204 * 12 11 10 41 41 H 1.08998 * 109.48926 * 296.78217 * 14 13 12 42 42 H 1.09004 * 109.48940 * 56.84520 * 14 13 12 43 43 H 1.08996 * 109.49215 * 298.43455 * 15 14 13 44 44 H 1.09003 * 109.50894 * 178.37905 * 15 14 13 45 45 H 1.09005 * 109.46920 * 53.79733 * 17 16 15 46 46 H 1.08995 * 109.47134 * 173.79871 * 17 16 15 47 47 H 0.97002 * 119.99994 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.48778 * 299.35834 * 26 16 15 49 49 H 1.08990 * 109.48939 * 179.28512 * 26 16 15 50 50 H 1.09003 * 109.49137 * 303.16306 * 27 13 12 51 51 H 1.09004 * 109.48708 * 63.22805 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5253 -0.0005 5 6 4.1994 0.4252 -0.0005 6 6 5.5687 0.6061 -0.0074 7 6 6.0990 1.8879 -0.0088 8 8 7.4470 2.0660 -0.0160 9 6 8.2570 0.8887 -0.0225 10 6 5.2543 2.9877 -0.0025 11 6 3.8846 2.8068 0.0047 12 6 2.9667 4.0020 0.0121 13 7 2.4852 4.2411 1.3791 14 6 1.6245 3.1405 1.8344 15 6 1.2096 3.3882 3.2866 16 7 0.5069 4.6755 3.3798 17 6 0.0254 4.9148 4.7469 18 6 -1.0386 3.9037 5.0889 19 1 -1.3284 3.1583 4.3631 20 6 -1.6428 3.9310 6.3279 21 7 -1.2902 4.8391 7.2115 22 14 -2.9620 2.6782 6.7515 23 1 -2.3928 1.3097 6.6599 24 1 -3.4487 2.9200 8.1335 25 1 -4.0929 2.8087 5.7980 26 6 1.3676 5.7762 2.9245 27 6 1.7826 5.5285 1.4723 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7866 -0.5728 0.0003 34 1 6.2265 -0.2504 -0.0118 35 1 8.0346 0.2995 -0.9121 36 1 9.3096 1.1718 -0.0284 37 1 8.0445 0.2968 0.8678 38 1 5.6671 3.9857 -0.0032 39 1 3.5094 4.8790 -0.3407 40 1 2.1175 3.8118 -0.6442 41 1 0.7356 3.0900 1.2057 42 1 2.1712 2.1999 1.7679 43 1 2.0967 3.4115 3.9194 44 1 0.5477 2.5879 3.6177 45 1 0.8557 4.8191 5.4465 46 1 -0.3927 5.9191 4.8143 47 1 -1.7150 4.8580 8.0834 48 1 2.2566 5.8266 3.5531 49 1 0.8209 6.7168 2.9910 50 1 2.4446 6.3289 1.1417 51 1 0.8954 5.5052 0.8395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232381802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:54 Heat of formation + Delta-G solvation = -52.928237 kcal Electronic energy + Delta-G solvation = -29946.260511 eV Core-core repulsion = 26038.770642 eV Total energy + Delta-G solvation = -3907.489869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.67734 -40.20410 -39.71732 -37.66426 -36.48625 -34.62806 -32.88230 -32.39987 -31.77807 -30.56750 -29.54772 -27.93436 -27.35357 -25.29722 -25.10959 -24.21067 -23.22151 -22.54697 -21.86423 -20.59646 -19.07757 -18.51116 -18.45779 -17.66343 -17.56427 -16.84533 -16.51895 -16.33830 -16.02424 -15.82286 -15.64760 -15.55044 -15.30473 -14.98901 -14.85244 -14.53201 -14.14082 -14.04311 -13.77728 -13.59087 -13.42434 -13.22087 -13.09013 -13.02328 -12.81542 -12.74295 -12.66401 -12.38373 -12.32071 -12.19433 -12.08110 -11.98991 -11.86975 -11.58607 -11.45832 -11.19107 -11.04990 -10.61555 -9.93399 -9.27544 -9.02682 -8.64130 -8.20723 -6.31447 0.24804 0.50282 1.39679 1.43785 1.51677 2.30660 2.39925 2.45614 2.64417 3.10945 3.19307 3.31901 3.72482 3.79574 4.04055 4.05203 4.10439 4.13305 4.19979 4.26950 4.35332 4.37196 4.39595 4.43636 4.44712 4.50791 4.54773 4.55964 4.70161 4.75277 4.77706 4.82616 4.91147 4.94798 4.97599 5.00471 5.04743 5.11660 5.19713 5.23440 5.25604 5.29748 5.32553 5.36602 5.63131 5.66056 6.02047 6.10566 6.12628 6.35385 6.40100 6.59098 6.62901 6.83806 7.38066 8.90581 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.003013 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.450833 B = 9291.406104 C =10052.756215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.324 6.324 4 C 0.089 3.911 5 C -0.171 4.171 6 C -0.168 4.168 7 C 0.079 3.921 8 O -0.337 6.337 9 C 0.019 3.981 10 C -0.107 4.107 11 C -0.082 4.082 12 C 0.108 3.892 13 N -0.543 5.543 14 C 0.085 3.915 15 C 0.072 3.928 16 N -0.543 5.543 17 C 0.209 3.791 18 C -0.524 4.524 19 H 0.062 0.938 20 C 0.001 3.999 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.267 1.267 26 C 0.055 3.945 27 C 0.070 3.930 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.088 0.912 43 H 0.006 0.994 44 H 0.063 0.937 45 H -0.043 1.043 46 H 0.005 0.995 47 H 0.265 0.735 48 H 0.019 0.981 49 H 0.074 0.926 50 H 0.102 0.898 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.221 -11.509 -20.356 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.239 6.239 4 C 0.044 3.956 5 C -0.190 4.190 6 C -0.187 4.187 7 C 0.034 3.966 8 O -0.251 6.251 9 C -0.075 4.075 10 C -0.126 4.126 11 C -0.083 4.083 12 C -0.019 4.019 13 N -0.268 5.268 14 C -0.043 4.043 15 C -0.057 4.057 16 N -0.268 5.268 17 C 0.083 3.917 18 C -0.562 4.562 19 H 0.080 0.920 20 C -0.197 4.197 21 N -0.576 5.576 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.192 1.192 26 C -0.074 4.074 27 C -0.057 4.057 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.106 0.894 43 H 0.025 0.975 44 H 0.082 0.918 45 H -0.026 1.026 46 H 0.023 0.977 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.092 0.908 50 H 0.120 0.880 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.127 -11.120 -20.189 27.569 hybrid contribution -0.613 -0.671 0.943 1.310 sum 14.514 -11.791 -19.245 26.834 Atomic orbital electron populations 1.21791 0.92532 1.03825 1.02679 1.22947 0.96154 0.81364 1.02122 1.86258 1.18553 1.30469 1.88601 1.18839 0.83078 0.93805 0.99925 1.21246 0.93474 0.98662 1.05597 1.21273 0.95794 0.96388 1.05208 1.18983 0.83312 0.93853 1.00445 1.86053 1.14151 1.35591 1.89330 1.23299 0.95354 0.86779 1.02066 1.20219 0.90590 0.98636 1.03176 1.18965 0.93208 0.92461 1.03673 1.20826 0.96463 0.95901 0.88674 1.62228 1.38997 1.02561 1.23009 1.22145 0.94660 0.94459 0.93057 1.21982 0.94815 0.92482 0.96381 1.62237 1.37117 1.02277 1.25188 1.19348 0.93049 0.95971 0.83326 1.21400 1.20548 1.15049 0.99184 0.92004 1.25954 0.99637 0.98119 0.96018 1.70091 1.44262 1.36320 1.06916 0.85415 0.78861 0.79005 0.77225 1.19094 1.20714 1.19168 1.22166 0.94448 0.94744 0.96040 1.22098 0.97001 0.91805 0.94831 0.93242 0.91859 0.88306 0.90406 0.91665 0.83168 0.82883 0.91544 0.86575 0.92164 0.84136 0.88240 0.93770 0.94900 0.89385 0.97545 0.91815 1.02577 0.97729 0.92635 0.96284 0.90804 0.87993 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.05 0.88 5.46 71.98 0.39 1.27 16 3 O -0.32 -7.99 6.26 -93.33 -0.58 -8.57 16 4 C 0.09 2.16 5.41 22.49 0.12 2.28 16 5 C -0.17 -3.40 9.03 22.36 0.20 -3.20 16 6 C -0.17 -3.15 9.03 22.36 0.20 -2.94 16 7 C 0.08 1.74 6.68 22.49 0.15 1.89 16 8 O -0.34 -6.87 10.50 -93.31 -0.98 -7.85 16 9 C 0.02 0.22 9.81 113.37 1.11 1.33 16 10 C -0.11 -2.56 9.60 22.36 0.21 -2.34 16 11 C -0.08 -2.08 5.17 -19.78 -0.10 -2.18 16 12 C 0.11 2.78 4.99 85.56 0.43 3.21 16 13 N -0.54 -17.24 4.70 -900.31 -4.23 -21.47 16 14 C 0.08 3.00 4.15 86.31 0.36 3.35 16 15 C 0.07 3.16 5.43 86.31 0.47 3.62 16 16 N -0.54 -25.69 4.70 -900.30 -4.23 -29.93 16 17 C 0.21 11.91 4.72 85.56 0.40 12.31 16 18 C -0.52 -30.92 8.47 25.60 0.22 -30.70 16 19 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 20 C 0.00 0.04 5.46 84.65 0.46 0.50 16 21 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 22 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 C 0.05 2.16 5.61 86.31 0.48 2.64 16 27 C 0.07 2.20 5.61 86.31 0.48 2.69 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.06 7.66 -2.39 -0.02 1.05 16 32 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 33 H 0.15 2.22 6.29 -2.91 -0.02 2.20 16 34 H 0.15 1.95 6.29 -2.91 -0.02 1.93 16 35 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.60 7.66 -2.39 -0.02 0.59 16 38 H 0.14 3.08 8.04 -2.91 -0.02 3.06 16 39 H 0.10 2.12 7.89 -2.39 -0.02 2.10 16 40 H 0.04 1.17 7.82 -2.39 -0.02 1.15 16 41 H 0.03 1.22 7.89 -2.39 -0.02 1.20 16 42 H 0.09 2.99 4.72 -2.38 -0.01 2.98 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.06 2.97 6.79 -2.39 -0.02 2.96 16 45 H -0.04 -2.71 8.12 -2.38 -0.02 -2.73 16 46 H 0.00 0.28 8.03 -2.39 -0.02 0.26 16 47 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 2.83 8.07 -2.39 -0.02 2.81 16 50 H 0.10 2.55 8.07 -2.39 -0.02 2.53 16 51 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -72.06 396.30 -0.48 -72.54 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.90 Total: 14.04 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 6.34 Total: -8.23 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -8.18 Total: -109.10 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.56 Total: -16.42 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.06 -0.48 -72.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232381802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.611 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds