Wall clock time and date at job start Tue Mar 31 2020 19:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.46969 * 2 1 4 4 C 1.35900 * 116.99934 * 179.97438 * 3 2 1 5 5 C 1.38659 * 120.02749 * 0.02562 * 4 3 2 6 6 C 1.38615 * 119.89101 * 179.97438 * 5 4 3 7 7 O 1.35898 * 120.02764 * 180.02562 * 6 5 4 8 8 C 1.42897 * 117.00072 * 179.97438 * 7 6 5 9 9 C 1.38797 * 119.94590 * 359.97438 * 6 5 4 10 10 C 1.38153 * 120.05322 * 0.02562 * 9 6 5 11 11 C 1.38201 * 120.11049 * 359.97438 * 10 9 6 12 12 C 1.50697 * 119.97374 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47008 * 260.00200 * 12 11 10 14 14 C 1.46959 * 110.99460 * 293.79328 * 13 12 11 15 15 C 1.53051 * 109.36182 * 176.80914 * 14 13 12 16 16 N 1.46961 * 109.36105 * 58.40992 * 15 14 13 17 17 C 1.46901 * 110.99697 * 176.81152 * 16 15 14 18 18 C 1.50700 * 109.46966 * 293.79268 * 17 16 15 19 19 H 1.07998 * 119.99905 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99628 * 180.02562 * 18 17 16 21 21 N 1.31505 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99634 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47262 * 59.99979 * 22 20 18 24 24 H 1.48499 * 109.47276 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47378 * 299.99848 * 22 20 18 26 26 C 1.46959 * 110.87645 * 300.67138 * 16 15 14 27 27 C 1.46948 * 111.00031 * 170.00000 * 13 12 11 28 28 H 1.08995 * 109.47324 * 300.00186 * 1 2 3 29 29 H 1.08997 * 109.47004 * 60.00263 * 1 2 3 30 30 H 1.08997 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47827 * 239.99871 * 2 1 3 32 32 H 1.08997 * 109.47004 * 119.99737 * 2 1 3 33 33 H 1.08004 * 120.05703 * 0.24092 * 5 4 3 34 34 H 1.09003 * 109.46850 * 60.00726 * 8 7 6 35 35 H 1.09002 * 109.46749 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47251 * 300.00322 * 8 7 6 37 37 H 1.07992 * 119.96978 * 179.97438 * 9 6 5 38 38 H 1.07999 * 119.94483 * 179.97438 * 10 9 6 39 39 H 1.09004 * 109.46998 * 19.99544 * 12 11 10 40 40 H 1.09001 * 109.47261 * 139.99500 * 12 11 10 41 41 H 1.08998 * 109.49258 * 296.78270 * 14 13 12 42 42 H 1.09003 * 109.48676 * 56.84963 * 14 13 12 43 43 H 1.08991 * 109.49356 * 298.43731 * 15 14 13 44 44 H 1.09003 * 109.48916 * 178.36934 * 15 14 13 45 45 H 1.08998 * 109.47551 * 53.79725 * 17 16 15 46 46 H 1.09002 * 109.46537 * 173.79588 * 17 16 15 47 47 H 0.97000 * 119.99836 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.49542 * 299.35893 * 26 16 15 49 49 H 1.09003 * 109.48676 * 179.28859 * 26 16 15 50 50 H 1.09002 * 109.49342 * 303.15214 * 27 13 12 51 51 H 1.08999 * 109.49145 * 63.21838 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1987 0.4262 0.0005 6 6 5.5725 0.6111 0.0005 7 8 6.4034 -0.4642 0.0000 8 6 7.8076 -0.1991 -0.0005 9 6 6.0987 1.8954 0.0000 10 6 5.2545 2.9890 0.0001 11 6 3.8845 2.8073 0.0000 12 6 2.9665 4.0024 -0.0005 13 7 2.4774 4.2448 1.3633 14 6 1.6142 3.1451 1.8163 15 6 1.1912 3.3961 3.2657 16 7 0.4879 4.6836 3.3519 17 6 -0.0012 4.9259 4.7158 18 6 -1.0670 3.9156 5.0541 19 1 -1.3522 3.1681 4.3287 20 6 -1.6780 3.9457 6.2898 21 7 -1.3303 4.8557 7.1732 22 14 -2.9986 2.6930 6.7094 23 1 -2.4278 1.3247 6.6247 24 1 -3.4931 2.9380 8.0881 25 1 -4.1244 2.8201 5.7494 26 6 1.3511 5.7833 2.8989 27 6 1.7742 5.5322 1.4496 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7874 -0.5725 -0.0038 34 1 8.0696 0.3729 0.8896 35 1 8.3553 -1.1416 -0.0014 36 1 8.0689 0.3734 -0.8904 37 1 7.1689 2.0400 0.0005 38 1 5.6659 3.9876 0.0001 39 1 3.5110 4.8787 -0.3523 40 1 2.1209 3.8107 -0.6611 41 1 0.7287 3.0931 1.1828 42 1 2.1613 2.2043 1.7550 43 1 2.0747 3.4209 3.9033 44 1 0.5274 2.5965 3.5945 45 1 0.8252 4.8320 5.4202 46 1 -0.4197 5.9304 4.7785 47 1 -1.7599 4.8767 8.0427 48 1 2.2366 5.8352 3.5323 49 1 0.8039 6.7240 2.9602 50 1 2.4379 6.3319 1.1208 51 1 0.8905 5.5074 0.8119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:57 Heat of formation + Delta-G solvation = -54.066270 kcal Electronic energy + Delta-G solvation = -29964.456477 eV Core-core repulsion = 26056.917259 eV Total energy + Delta-G solvation = -3907.539218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72464 -40.24938 -39.71952 -37.83100 -36.44576 -34.59279 -32.79230 -32.24548 -31.75172 -30.83307 -29.54795 -28.29746 -27.08130 -25.19654 -25.04392 -24.20755 -23.20950 -22.58721 -21.90599 -20.58526 -19.67968 -18.48804 -17.74476 -17.65225 -17.28271 -16.92409 -16.62231 -16.56235 -16.32961 -15.81954 -15.72581 -15.55517 -15.33892 -14.98428 -14.92892 -14.39387 -14.16096 -14.08410 -13.91097 -13.46221 -13.41717 -13.18201 -13.06944 -13.01836 -12.82557 -12.66869 -12.65376 -12.38650 -12.20030 -12.16518 -12.06184 -12.01228 -11.86877 -11.69761 -11.58285 -11.21202 -11.12298 -10.61772 -9.56264 -9.30175 -9.04147 -8.86653 -8.20994 -6.31545 0.37986 0.43954 1.39479 1.43422 1.51294 2.16026 2.39678 2.41971 2.64869 3.10723 3.22237 3.32414 3.79404 3.91462 4.04173 4.05382 4.06495 4.11687 4.16425 4.27798 4.35173 4.37830 4.41853 4.42423 4.47509 4.49143 4.55319 4.57876 4.70205 4.71668 4.76876 4.80992 4.90883 4.93647 4.94964 5.01260 5.06041 5.11713 5.15043 5.22914 5.26322 5.29221 5.36593 5.54358 5.63109 5.67467 6.02490 6.13126 6.15089 6.32232 6.36800 6.50117 6.63656 6.83725 7.37926 8.90270 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.003009 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.076512 B = 9301.655591 C = 9994.404302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.317 6.317 4 C 0.163 3.837 5 C -0.257 4.257 6 C 0.153 3.847 7 O -0.335 6.335 8 C 0.018 3.982 9 C -0.245 4.245 10 C -0.026 4.026 11 C -0.160 4.160 12 C 0.113 3.887 13 N -0.542 5.542 14 C 0.085 3.915 15 C 0.072 3.928 16 N -0.544 5.544 17 C 0.210 3.790 18 C -0.524 4.524 19 H 0.061 0.939 20 C 0.001 3.999 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.267 1.267 26 C 0.054 3.946 27 C 0.070 3.930 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.102 0.898 40 H 0.036 0.964 41 H 0.031 0.969 42 H 0.085 0.915 43 H 0.007 0.993 44 H 0.061 0.939 45 H -0.043 1.043 46 H 0.005 0.995 47 H 0.265 0.735 48 H 0.020 0.980 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.501 -9.134 -20.277 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.231 6.231 4 C 0.117 3.883 5 C -0.277 4.277 6 C 0.107 3.893 7 O -0.249 6.249 8 C -0.076 4.076 9 C -0.264 4.264 10 C -0.045 4.045 11 C -0.161 4.161 12 C -0.013 4.013 13 N -0.267 5.267 14 C -0.043 4.043 15 C -0.056 4.056 16 N -0.269 5.269 17 C 0.083 3.917 18 C -0.562 4.562 19 H 0.079 0.921 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.192 1.192 26 C -0.074 4.074 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.120 0.880 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.103 0.897 43 H 0.025 0.975 44 H 0.080 0.920 45 H -0.025 1.025 46 H 0.023 0.977 47 H 0.074 0.926 48 H 0.038 0.962 49 H 0.091 0.909 50 H 0.122 0.878 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.251 -9.132 -20.111 27.422 hybrid contribution -0.551 -0.470 0.951 1.195 sum 15.700 -9.602 -19.161 26.567 Atomic orbital electron populations 1.21792 0.92089 1.03956 1.02863 1.22981 0.96408 0.81168 1.02140 1.86284 1.18493 1.30659 1.87686 1.18609 0.82498 0.93273 0.93910 1.20472 0.91620 0.99207 1.16359 1.18841 0.89756 0.86784 0.93871 1.86026 1.19320 1.31207 1.88340 1.23361 0.76838 1.04911 1.02456 1.21369 1.01664 0.91038 1.12309 1.20908 0.90739 0.99829 0.92975 1.19204 0.94810 0.91727 1.10377 1.20768 0.96321 0.96017 0.88241 1.62269 1.38395 1.02319 1.23720 1.22126 0.94587 0.94540 0.93079 1.21974 0.94800 0.92458 0.96411 1.62237 1.36859 1.02298 1.25479 1.19344 0.93010 0.95942 0.83379 1.21403 1.20426 1.14985 0.99413 0.92086 1.25940 0.99644 0.98092 0.95999 1.70083 1.44162 1.36224 1.07067 0.85427 0.78888 0.79003 0.77264 1.19186 1.20659 1.19164 1.22174 0.94422 0.94664 0.96156 1.22097 0.96982 0.91964 0.94720 0.93042 0.91626 0.88244 0.90530 0.91803 0.84295 0.91865 0.86372 0.91243 0.82968 0.82850 0.88004 0.94562 0.95072 0.89677 0.97480 0.92012 1.02543 0.97692 0.92625 0.96193 0.90871 0.87814 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.05 0.96 5.46 71.98 0.39 1.35 16 3 O -0.32 -8.25 6.23 -92.43 -0.58 -8.82 16 4 C 0.16 4.18 5.41 22.49 0.12 4.30 16 5 C -0.26 -6.13 8.97 22.46 0.20 -5.92 16 6 C 0.15 3.39 6.68 22.49 0.15 3.54 16 7 O -0.34 -6.68 10.49 -92.40 -0.97 -7.65 16 8 C 0.02 0.20 9.81 113.37 1.11 1.31 16 9 C -0.25 -4.64 9.04 22.38 0.20 -4.43 16 10 C -0.03 -0.52 9.66 22.24 0.21 -0.31 16 11 C -0.16 -3.91 5.18 -19.75 -0.10 -4.01 16 12 C 0.11 2.81 4.99 85.56 0.43 3.23 16 13 N -0.54 -16.86 4.70 -900.27 -4.23 -21.09 16 14 C 0.08 3.01 4.14 86.31 0.36 3.37 16 15 C 0.07 3.18 5.43 86.31 0.47 3.64 16 16 N -0.54 -25.69 4.70 -900.27 -4.23 -29.92 16 17 C 0.21 11.91 4.72 85.56 0.40 12.31 16 18 C -0.52 -31.03 8.47 25.60 0.22 -30.82 16 19 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 20 C 0.00 0.07 5.46 84.66 0.46 0.53 16 21 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 22 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.05 2.12 5.61 86.31 0.48 2.61 16 27 C 0.07 2.15 5.61 86.31 0.48 2.64 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 32 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 33 H 0.14 2.99 6.30 -2.91 -0.02 2.97 16 34 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 37 H 0.15 1.99 6.29 -2.91 -0.02 1.98 16 38 H 0.15 2.30 8.03 -2.91 -0.02 2.28 16 39 H 0.10 1.98 7.89 -2.38 -0.02 1.96 16 40 H 0.04 0.96 7.83 -2.39 -0.02 0.94 16 41 H 0.03 1.16 7.88 -2.39 -0.02 1.15 16 42 H 0.09 2.94 4.69 -2.39 -0.01 2.93 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 2.91 6.79 -2.39 -0.02 2.89 16 45 H -0.04 -2.68 8.12 -2.39 -0.02 -2.70 16 46 H 0.00 0.30 8.03 -2.39 -0.02 0.28 16 47 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.07 2.77 8.07 -2.39 -0.02 2.75 16 50 H 0.10 2.48 8.07 -2.39 -0.02 2.47 16 51 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -72.27 396.24 -0.46 -72.73 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.90 Total: 13.84 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 6.34 Total: -8.78 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -8.18 Total: -108.69 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.55 Total: -16.47 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.27 -0.46 -72.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.661 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds