Wall clock time and date at job start Tue Mar 31 2020 18:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47281 * 2 1 4 4 C 1.36940 * 120.00076 * 275.31306 * 3 2 1 5 5 H 1.07999 * 120.00143 * 37.57443 * 4 3 2 6 6 C 1.38809 * 119.99675 * 217.57972 * 4 3 2 7 7 N 1.31616 * 120.00643 * 21.42145 * 6 4 3 8 8 Si 1.86807 * 119.99669 * 201.42321 * 6 4 3 9 9 H 1.48499 * 109.47325 * 90.00032 * 8 6 4 10 10 H 1.48497 * 109.47092 * 209.99763 * 8 6 4 11 11 H 1.48502 * 109.47271 * 329.99953 * 8 6 4 12 12 C 1.46501 * 119.99985 * 95.30863 * 3 2 1 13 13 C 1.53001 * 109.47312 * 270.00175 * 12 3 2 14 14 C 1.53001 * 109.47503 * 180.02562 * 13 12 3 15 15 N 1.46493 * 109.47330 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00046 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99909 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00129 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47231 * 180.02562 * 18 16 15 20 20 C 1.38175 * 120.02543 * 265.02183 * 19 18 16 21 21 C 1.38245 * 120.05319 * 179.97438 * 20 19 18 22 22 C 1.50693 * 119.94336 * 180.02562 * 21 20 19 23 23 C 1.38289 * 120.11118 * 0.02562 * 21 20 19 24 24 C 1.38125 * 120.05743 * 359.68677 * 23 21 20 25 25 C 1.38705 * 120.03002 * 85.00275 * 19 18 16 26 26 O 1.35895 * 120.05495 * 0.02562 * 25 19 18 27 27 C 1.42905 * 117.00100 * 180.02562 * 26 25 19 28 28 H 1.09002 * 109.47076 * 59.99831 * 1 2 3 29 29 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46805 * 300.00022 * 1 2 3 31 31 H 1.09000 * 109.47259 * 239.99915 * 2 1 3 32 32 H 1.09000 * 109.47225 * 119.99645 * 2 1 3 33 33 H 0.96996 * 120.00433 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47015 * 150.00478 * 12 3 2 35 35 H 1.09001 * 109.47340 * 30.00499 * 12 3 2 36 36 H 1.09002 * 109.46769 * 59.99662 * 13 12 3 37 37 H 1.09001 * 109.47183 * 300.00421 * 13 12 3 38 38 H 1.09003 * 109.46739 * 59.99453 * 14 13 12 39 39 H 1.09006 * 109.46662 * 300.00173 * 14 13 12 40 40 H 0.97001 * 120.00013 * 0.02562 * 15 14 13 41 41 H 1.09004 * 109.46765 * 60.00522 * 18 16 15 42 42 H 1.09001 * 109.47340 * 300.00697 * 18 16 15 43 43 H 1.08001 * 119.97294 * 359.95604 * 20 19 18 44 44 H 1.09003 * 109.47459 * 89.99849 * 22 21 20 45 45 H 1.09007 * 109.47126 * 210.00047 * 22 21 20 46 46 H 1.08996 * 109.47207 * 329.99883 * 22 21 20 47 47 H 1.08003 * 119.97383 * 179.97438 * 23 21 20 48 48 H 1.07997 * 120.02938 * 180.32265 * 24 23 21 49 49 H 1.09006 * 109.46944 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.46780 * 299.99429 * 27 26 25 51 51 H 1.09000 * 109.47361 * 59.99734 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2112 2.9289 -1.3728 7 7 4.3027 2.7981 -0.6491 8 14 3.0994 4.2795 -2.6585 9 1 2.5377 5.5069 -2.0395 10 1 4.4549 4.5696 -3.1909 11 1 2.2166 3.8358 -3.7672 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7383 1.8366 14 6 1.5133 3.4192 3.1556 15 7 0.3352 4.0953 3.7042 16 6 0.4250 4.7663 4.8696 17 8 1.4812 4.8109 5.4638 18 6 -0.7871 5.4613 5.4342 19 6 -0.4219 6.1321 6.7333 20 6 -0.6436 5.4830 7.9328 21 6 -0.3083 6.0976 9.1248 22 6 -0.5506 5.3872 10.4315 23 6 0.2491 7.3632 9.1201 24 6 0.4781 8.0138 7.9235 25 6 0.1374 7.4014 6.7259 26 8 0.3562 8.0418 5.5475 27 6 0.9357 9.3463 5.6160 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0489 3.4031 -0.7830 34 1 3.1617 2.7642 1.0859 35 1 2.7256 1.2833 1.9721 36 1 0.3542 2.0068 2.0139 37 1 0.7903 3.4876 1.1277 38 1 2.3017 4.1506 2.9778 39 1 1.8659 2.6700 3.8646 40 1 -0.5097 4.0593 3.2291 41 1 -1.5755 4.7298 5.6117 42 1 -1.1395 6.2106 4.7253 43 1 -1.0794 4.4948 7.9391 44 1 0.3303 4.8020 10.6958 45 1 -0.7471 6.1211 11.2132 46 1 -1.4101 4.7246 10.3309 47 1 0.5098 7.8414 10.0528 48 1 0.9182 9.0000 7.9201 49 1 1.0560 9.7438 4.6081 50 1 0.2831 10.0041 6.1900 51 1 1.9095 9.2863 6.1019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265122039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:27 Heat of formation + Delta-G solvation = -46.733810 kcal Electronic energy + Delta-G solvation = -28539.782063 eV Core-core repulsion = 24632.560804 eV Total energy + Delta-G solvation = -3907.221259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.58868 -39.14927 -37.78034 -36.39884 -34.66774 -33.38729 -31.84332 -31.79183 -31.17093 -28.75799 -28.06070 -27.81318 -26.02033 -25.05654 -23.55170 -22.25252 -21.26229 -20.93769 -20.28511 -19.71530 -18.13674 -16.81580 -16.70806 -16.64540 -15.77052 -15.73651 -15.30956 -14.99214 -14.74322 -14.51522 -14.18327 -13.95063 -13.90848 -13.73586 -13.43755 -13.24458 -13.22321 -12.62956 -12.45620 -12.34771 -12.26285 -12.13384 -11.97688 -11.58260 -11.47706 -11.32260 -11.11073 -11.01171 -10.97834 -10.94572 -10.74793 -10.52866 -10.43501 -10.02372 -9.72504 -9.57684 -9.49761 -8.96053 -8.71174 -8.44989 -8.10893 -6.54177 -5.75945 -3.35522 1.16743 1.29781 2.91021 3.15463 3.35221 3.38138 3.44851 3.45495 3.75427 4.48749 4.49496 4.60476 4.70500 4.84664 4.97634 5.04117 5.08810 5.10941 5.20744 5.29165 5.30761 5.37673 5.42615 5.44079 5.46116 5.54896 5.72724 5.73489 5.87939 5.94552 6.02352 6.14001 6.15732 6.24071 6.33650 6.39040 6.45022 6.47881 6.55113 6.62595 6.65470 6.79296 6.87378 6.93533 7.13095 7.20943 7.25756 7.71537 7.79361 7.84749 8.50369 8.55141 9.22301 9.84701 10.43653 11.23355 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014256 B = 0.002407 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.631390 B =11630.373704 C =12938.392099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.145 4.145 14 C 0.122 3.878 15 N -0.728 5.728 16 C 0.513 3.487 17 O -0.537 6.537 18 C -0.095 4.095 19 C -0.090 4.090 20 C -0.070 4.070 21 C -0.126 4.126 22 C -0.108 4.108 23 C -0.082 4.082 24 C -0.205 4.205 25 C 0.139 3.861 26 O -0.312 6.312 27 C 0.029 3.971 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.255 0.745 34 H 0.095 0.905 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.127 0.873 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.099 0.901 50 H 0.053 0.947 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.377 9.181 18.893 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.186 4.186 14 C -0.002 4.002 15 N -0.379 5.379 16 C 0.298 3.702 17 O -0.413 6.413 18 C -0.135 4.135 19 C -0.091 4.091 20 C -0.088 4.088 21 C -0.126 4.126 22 C -0.164 4.164 23 C -0.101 4.101 24 C -0.224 4.224 25 C 0.093 3.907 26 O -0.225 6.225 27 C -0.066 4.066 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.231 0.769 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.118 0.882 50 H 0.072 0.928 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.436 9.204 19.083 24.076 hybrid contribution -0.297 1.057 -0.794 1.355 sum -11.734 10.261 18.289 24.030 Atomic orbital electron populations 1.22369 1.00191 0.98859 1.01105 1.20843 0.91665 0.87419 0.98691 1.43754 1.76060 1.08188 1.02520 1.18986 1.04599 1.21185 0.94160 0.92323 1.25192 0.94221 1.01314 0.98083 1.69997 1.03204 1.37202 1.42437 0.86415 0.76926 0.82693 0.81487 1.21309 1.21750 1.20291 1.20798 0.94509 0.96624 0.85714 1.22520 1.02251 0.99819 0.93997 1.21436 0.87245 0.95998 0.95481 1.46161 1.14407 1.54019 1.23353 1.20443 0.90050 0.78749 0.80922 1.90699 1.30287 1.60657 1.59699 1.20494 0.97142 1.00400 0.95460 1.18609 1.03501 0.92347 0.94629 1.20709 0.98706 0.98778 0.90608 1.19741 1.02189 0.95388 0.95286 1.20700 1.01951 0.99951 0.93823 1.20763 0.97704 0.94359 0.97233 1.21152 1.07316 1.01744 0.92173 1.18764 0.95196 0.91965 0.84735 1.86080 1.77491 1.30947 1.28015 1.23048 0.97596 0.81992 1.04007 0.93279 0.94656 0.93798 0.93920 0.94858 0.93522 0.88779 0.95722 0.93108 0.91776 0.91733 0.92198 0.76881 0.88245 0.87792 0.85536 0.91404 0.91864 0.91722 0.86015 0.85552 0.88213 0.92839 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 10.21 37.16 0.38 -2.59 16 2 C 0.14 2.96 6.44 -4.04 -0.03 2.94 16 3 N -0.58 -14.36 2.43 -173.24 -0.42 -14.78 16 4 C -0.26 -7.00 9.45 -15.06 -0.14 -7.15 16 5 H 0.06 1.59 7.92 -52.49 -0.42 1.17 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -25.54 11.47 55.49 0.64 -24.90 16 8 Si 0.90 21.52 29.60 -169.99 -5.03 16.48 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.15 3.46 5.33 -4.04 -0.02 3.44 16 13 C -0.15 -2.74 5.65 -26.73 -0.15 -2.89 16 14 C 0.12 2.14 5.67 -4.05 -0.02 2.11 16 15 N -0.73 -10.67 5.56 -60.30 -0.33 -11.01 16 16 C 0.51 7.95 7.82 -10.99 -0.09 7.86 16 17 O -0.54 -10.61 16.03 5.56 0.09 -10.52 16 18 C -0.10 -1.10 5.55 -29.04 -0.16 -1.26 16 19 C -0.09 -1.14 4.39 -104.48 -0.46 -1.60 16 20 C -0.07 -0.79 9.33 -39.60 -0.37 -1.16 16 21 C -0.13 -1.30 5.88 -104.60 -0.62 -1.92 16 22 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 23 C -0.08 -0.84 9.69 -39.60 -0.38 -1.22 16 24 C -0.21 -2.27 9.04 -39.43 -0.36 -2.62 16 25 C 0.14 1.80 6.66 -39.22 -0.26 1.54 16 26 O -0.31 -4.04 9.63 -19.41 -0.19 -4.22 16 27 C 0.03 0.25 9.81 101.05 0.99 1.25 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.76 6.64 -51.93 -0.34 0.41 16 31 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.09 2.48 5.52 -51.93 -0.29 2.20 16 35 H 0.02 0.54 7.86 -51.93 -0.41 0.14 16 36 H 0.05 0.89 6.64 -51.93 -0.34 0.55 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.40 4.71 8.47 -40.82 -0.35 4.36 16 41 H 0.10 0.85 8.05 -51.93 -0.42 0.44 16 42 H 0.10 1.10 7.69 -51.93 -0.40 0.70 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 46 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 48 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 49 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 51 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 LS Contribution 415.87 15.07 6.27 6.27 Total: -1.00 -33.39 415.87 -9.09 -42.48 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.70 Total: 3.67 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.41 Total: -3.47 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.12 Total: -50.69 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.10 Total: -14.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.39 -9.09 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265122039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.252 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds