Wall clock time and date at job start Tue Mar 31 2020 19:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47291 * 2 1 4 4 C 1.36928 * 120.00030 * 275.31152 * 3 2 1 5 5 H 1.08004 * 120.00148 * 37.57795 * 4 3 2 6 6 C 1.38813 * 119.99935 * 217.57929 * 4 3 2 7 7 N 1.31616 * 119.99943 * 21.42451 * 6 4 3 8 8 Si 1.86802 * 120.00106 * 201.42660 * 6 4 3 9 9 H 1.48497 * 109.47485 * 89.99690 * 8 6 4 10 10 H 1.48500 * 109.47142 * 210.00146 * 8 6 4 11 11 H 1.48501 * 109.46913 * 329.99912 * 8 6 4 12 12 C 1.46503 * 119.99825 * 95.31152 * 3 2 1 13 13 C 1.53001 * 109.47166 * 269.99915 * 12 3 2 14 14 N 1.46491 * 109.47329 * 179.97438 * 13 12 3 15 15 C 1.34774 * 120.00132 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00105 * 180.02562 * 15 14 13 18 18 H 1.09003 * 109.47181 * 60.00189 * 17 15 14 19 19 C 1.52999 * 109.47234 * 300.00291 * 17 15 14 20 20 O 1.42903 * 109.47372 * 180.02562 * 17 15 14 21 21 C 1.42903 * 114.00043 * 210.00169 * 20 17 15 22 22 C 1.50699 * 109.46916 * 180.02562 * 21 20 17 23 23 C 1.38258 * 120.00015 * 359.97438 * 22 21 20 24 24 C 1.38213 * 119.99941 * 179.72645 * 23 22 21 25 25 C 1.38259 * 119.99963 * 0.27553 * 24 23 22 26 26 C 1.38215 * 119.99786 * 359.97438 * 25 24 23 27 27 C 1.38213 * 119.99862 * 180.19406 * 22 21 20 28 28 C 1.50700 * 120.00001 * 0.03307 * 27 22 21 29 29 H 1.09008 * 109.47343 * 299.99779 * 1 2 3 30 30 H 1.09004 * 109.47154 * 59.99636 * 1 2 3 31 31 H 1.08997 * 109.47748 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46844 * 240.00103 * 2 1 3 33 33 H 1.09002 * 109.46649 * 120.00469 * 2 1 3 34 34 H 0.97005 * 120.00114 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.47228 * 150.00145 * 12 3 2 36 36 H 1.09001 * 109.46858 * 30.00028 * 12 3 2 37 37 H 1.09003 * 109.47080 * 59.99848 * 13 12 3 38 38 H 1.09000 * 109.46943 * 300.00210 * 13 12 3 39 39 H 0.97002 * 119.99968 * 0.02562 * 14 13 12 40 40 H 1.09006 * 109.47176 * 60.00336 * 19 17 15 41 41 H 1.09004 * 109.47094 * 179.97438 * 19 17 15 42 42 H 1.08994 * 109.47193 * 300.00163 * 19 17 15 43 43 H 1.08996 * 109.47315 * 59.99924 * 21 20 17 44 44 H 1.09002 * 109.47212 * 300.00045 * 21 20 17 45 45 H 1.08000 * 119.99766 * 0.02562 * 23 22 21 46 46 H 1.08001 * 120.00153 * 180.25767 * 24 23 22 47 47 H 1.08001 * 120.00032 * 179.97438 * 25 24 23 48 48 H 1.08009 * 119.99758 * 179.97438 * 26 25 24 49 49 H 1.08993 * 109.47483 * 270.17069 * 28 27 22 50 50 H 1.09000 * 109.47276 * 30.18132 * 28 27 22 51 51 H 1.09006 * 109.46649 * 150.17162 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4105 1.9278 -1.9627 6 6 3.2112 2.9288 -1.3728 7 7 4.3026 2.7979 -0.6490 8 14 3.0994 4.2795 -2.6584 9 1 2.5377 5.5069 -2.0394 10 1 4.4550 4.5695 -3.1908 11 1 2.2167 3.8357 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5650 4.0765 3.7891 16 8 -0.5678 4.1559 3.3632 17 6 0.9301 4.7466 5.0886 18 1 1.7188 5.4777 4.9114 19 6 1.4240 3.6946 6.0837 20 8 -0.2193 5.4055 5.6242 21 6 0.0851 6.5654 6.4014 22 6 -1.1936 7.1765 6.9139 23 6 -2.4099 6.5978 6.6018 24 6 -3.5822 7.1550 7.0766 25 6 -3.5390 8.2942 7.8588 26 6 -2.3234 8.8756 8.1664 27 6 -1.1506 8.3179 7.6921 28 6 0.1748 8.9518 8.0274 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 5.0489 3.4030 -0.7829 35 1 3.1617 2.7640 1.0860 36 1 2.7255 1.2832 1.9721 37 1 0.3541 2.0068 2.0139 38 1 0.7904 3.4876 1.1278 39 1 2.4035 3.3260 3.4407 40 1 2.3008 3.1917 5.6755 41 1 1.6885 4.1793 7.0236 42 1 0.6354 2.9634 6.2609 43 1 0.6116 7.2906 5.7809 44 1 0.7157 6.2828 7.2443 45 1 -2.4435 5.7077 5.9911 46 1 -4.5321 6.7007 6.8363 47 1 -4.4552 8.7298 8.2294 48 1 -2.2897 9.7658 8.7771 49 1 0.5588 8.5231 8.9530 50 1 0.8819 8.7646 7.2193 51 1 0.0422 10.0265 8.1523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266406019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:21 Heat of formation + Delta-G solvation = -48.071701 kcal Electronic energy + Delta-G solvation = -28526.056268 eV Core-core repulsion = 24618.776994 eV Total energy + Delta-G solvation = -3907.279274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.02423 -39.42160 -37.54506 -36.25291 -34.12113 -33.34061 -32.37361 -31.90001 -30.92370 -29.43656 -27.48618 -27.41863 -26.20318 -24.61731 -23.80228 -22.11469 -21.63024 -21.04157 -20.41068 -19.90075 -17.48413 -17.12141 -16.65803 -16.30141 -15.86577 -15.41885 -15.13404 -15.06976 -14.80578 -14.62513 -14.11667 -13.95556 -13.78213 -13.63375 -13.30400 -13.22330 -13.05592 -12.74864 -12.58402 -12.39865 -12.38220 -12.34394 -12.09814 -12.01398 -11.52355 -11.50195 -11.13744 -11.12552 -10.95831 -10.79336 -10.65331 -10.50907 -10.14529 -10.08754 -9.88418 -9.80645 -9.29070 -8.91189 -8.73561 -8.58920 -8.45902 -6.64695 -5.85630 -3.44324 1.14054 1.26027 2.90075 3.00442 3.34653 3.41768 3.44320 3.58142 3.89199 4.44671 4.55096 4.61742 4.71958 4.79170 4.86448 4.94473 4.97647 5.02218 5.08677 5.17139 5.26129 5.32604 5.35357 5.43332 5.50088 5.52640 5.55495 5.64225 5.85766 5.94659 5.96791 5.98769 6.10130 6.15845 6.28464 6.37804 6.39067 6.41491 6.44039 6.49951 6.68113 6.84288 6.85986 6.90806 6.96953 7.03632 7.16037 7.52009 7.78848 7.91019 8.46062 8.58280 9.12749 9.74534 10.32554 11.14389 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.002247 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.450288 B =12455.867008 C =12961.193340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.099 3.901 14 N -0.718 5.718 15 C 0.508 3.492 16 O -0.527 6.527 17 C 0.070 3.930 18 H 0.086 0.914 19 C -0.170 4.170 20 O -0.352 6.352 21 C 0.101 3.899 22 C -0.089 4.089 23 C -0.088 4.088 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.084 4.084 28 C -0.118 4.118 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.029 0.971 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.396 0.604 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.137 0.863 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 8.482 20.312 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.026 4.026 14 N -0.370 5.370 15 C 0.291 3.709 16 O -0.403 6.403 17 C 0.009 3.991 18 H 0.104 0.896 19 C -0.227 4.227 20 O -0.270 6.270 21 C 0.025 3.975 22 C -0.089 4.089 23 C -0.106 4.106 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.084 4.084 28 C -0.175 4.175 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.230 0.770 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.155 0.845 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.934 8.522 19.910 22.740 hybrid contribution 0.546 0.893 -0.418 1.127 sum -6.388 9.415 19.492 22.569 Atomic orbital electron populations 1.22392 0.99891 0.99099 1.01426 1.20881 0.91773 0.86944 0.98897 1.43613 1.76025 1.08306 1.02082 1.19038 1.04723 1.21189 0.93960 0.92043 1.25185 0.94150 1.01230 0.98177 1.69996 1.03165 1.37244 1.42615 0.86382 0.76924 0.82572 0.81485 1.21222 1.21700 1.20138 1.21057 0.94541 0.96941 0.86439 1.22479 1.01126 0.96518 0.82515 1.46069 1.12926 1.53428 1.24621 1.20249 0.85863 0.79562 0.85182 1.90705 1.20354 1.59933 1.69260 1.21946 0.89061 0.95463 0.92634 0.89602 1.22237 1.02182 0.99212 0.99114 1.88006 1.29521 1.40969 1.68545 1.21310 0.94561 0.87210 0.94417 1.19501 0.94677 0.95696 0.98999 1.21152 0.91315 1.00033 0.98067 1.21208 0.98436 0.96469 0.98424 1.21148 0.97678 0.96253 0.98645 1.20923 0.91941 1.00372 1.00994 1.19612 0.95780 0.95086 0.97934 1.20837 0.94001 1.00645 1.02007 0.93658 0.93099 0.94441 0.93564 0.94723 0.93537 0.88407 0.95283 0.92950 0.91764 0.77014 0.90664 0.91500 0.91070 0.91776 0.91822 0.84482 0.86019 0.86225 0.86118 0.91008 0.91445 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.16 0.38 -2.75 16 2 C 0.14 2.94 6.44 -4.04 -0.03 2.91 16 3 N -0.58 -13.97 2.43 -173.24 -0.42 -14.39 16 4 C -0.26 -6.93 9.45 -15.06 -0.14 -7.07 16 5 H 0.06 1.66 7.92 -52.48 -0.42 1.25 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -24.48 11.47 55.49 0.64 -23.84 16 8 Si 0.90 21.34 29.60 -169.99 -5.03 16.31 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.14 3.01 5.45 -4.04 -0.02 2.99 16 13 C 0.10 1.99 6.00 -4.05 -0.02 1.97 16 14 N -0.72 -11.76 5.45 -60.30 -0.33 -12.09 16 15 C 0.51 8.62 7.23 -10.99 -0.08 8.54 16 16 O -0.53 -11.40 16.50 -14.35 -0.24 -11.64 16 17 C 0.07 0.88 3.14 -27.88 -0.09 0.79 16 18 H 0.09 0.87 7.79 -51.93 -0.40 0.47 16 19 C -0.17 -1.64 9.42 37.16 0.35 -1.29 16 20 O -0.35 -4.85 8.00 -55.14 -0.44 -5.29 16 21 C 0.10 1.08 4.86 36.01 0.18 1.25 16 22 C -0.09 -1.02 5.88 -104.62 -0.62 -1.63 16 23 C -0.09 -1.09 9.38 -39.58 -0.37 -1.46 16 24 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 26 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 27 C -0.08 -0.82 5.88 -104.63 -0.62 -1.43 16 28 C -0.12 -0.82 9.60 36.01 0.35 -0.48 16 29 H 0.04 0.85 6.64 -51.92 -0.34 0.51 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 34 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.10 2.39 5.52 -51.93 -0.29 2.11 16 36 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 37 H 0.05 1.09 6.64 -51.93 -0.34 0.74 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.40 5.31 7.89 -40.82 -0.32 4.98 16 40 H 0.07 0.62 7.57 -51.93 -0.39 0.23 16 41 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.63 7.42 -51.93 -0.39 0.24 16 44 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 45 H 0.14 1.91 7.01 -52.49 -0.37 1.54 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.44 6.64 -51.93 -0.34 0.10 16 51 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 LS Contribution 414.29 15.07 6.24 6.24 Total: -1.00 -32.32 414.29 -10.18 -42.50 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.60 Total: 4.40 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.00 Total: -2.19 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.11 Total: -50.32 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.68 Total: -16.93 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.32 -10.18 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266406019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.570 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds