Wall clock time and date at job start Tue Mar 31 2020 19:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47291 * 2 1 4 4 C 1.36928 * 120.00030 * 275.31152 * 3 2 1 5 5 H 1.08004 * 120.00148 * 37.57795 * 4 3 2 6 6 C 1.38813 * 119.99935 * 217.57929 * 4 3 2 7 7 N 1.31616 * 119.99943 * 21.42451 * 6 4 3 8 8 Si 1.86802 * 120.00106 * 201.42660 * 6 4 3 9 9 H 1.48497 * 109.47485 * 89.99690 * 8 6 4 10 10 H 1.48500 * 109.47142 * 210.00146 * 8 6 4 11 11 H 1.48501 * 109.46913 * 329.99912 * 8 6 4 12 12 C 1.46503 * 119.99825 * 95.31152 * 3 2 1 13 13 C 1.53001 * 109.47166 * 269.99915 * 12 3 2 14 14 N 1.46491 * 109.47329 * 179.97438 * 13 12 3 15 15 C 1.34774 * 120.00132 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00105 * 180.02562 * 15 14 13 18 18 H 1.09003 * 109.47181 * 60.00189 * 17 15 14 19 19 C 1.52999 * 109.47234 * 300.00291 * 17 15 14 20 20 O 1.42903 * 109.47372 * 180.02562 * 17 15 14 21 21 C 1.42903 * 114.00043 * 210.00169 * 20 17 15 22 22 C 1.50699 * 109.46916 * 180.02562 * 21 20 17 23 23 C 1.38258 * 120.00015 * 359.97438 * 22 21 20 24 24 C 1.38213 * 119.99941 * 179.72645 * 23 22 21 25 25 C 1.38259 * 119.99963 * 0.27553 * 24 23 22 26 26 C 1.38215 * 119.99786 * 359.97438 * 25 24 23 27 27 C 1.38213 * 119.99862 * 180.19406 * 22 21 20 28 28 C 1.50700 * 120.00001 * 0.03307 * 27 22 21 29 29 H 1.09008 * 109.47343 * 299.99779 * 1 2 3 30 30 H 1.09004 * 109.47154 * 59.99636 * 1 2 3 31 31 H 1.08997 * 109.47748 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46844 * 240.00103 * 2 1 3 33 33 H 1.09002 * 109.46649 * 120.00469 * 2 1 3 34 34 H 0.97005 * 120.00114 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.47228 * 150.00145 * 12 3 2 36 36 H 1.09001 * 109.46858 * 30.00028 * 12 3 2 37 37 H 1.09003 * 109.47080 * 59.99848 * 13 12 3 38 38 H 1.09000 * 109.46943 * 300.00210 * 13 12 3 39 39 H 0.97002 * 119.99968 * 0.02562 * 14 13 12 40 40 H 1.09006 * 109.47176 * 60.00336 * 19 17 15 41 41 H 1.09004 * 109.47094 * 179.97438 * 19 17 15 42 42 H 1.08994 * 109.47193 * 300.00163 * 19 17 15 43 43 H 1.08996 * 109.47315 * 59.99924 * 21 20 17 44 44 H 1.09002 * 109.47212 * 300.00045 * 21 20 17 45 45 H 1.08000 * 119.99766 * 0.02562 * 23 22 21 46 46 H 1.08001 * 120.00153 * 180.25767 * 24 23 22 47 47 H 1.08001 * 120.00032 * 179.97438 * 25 24 23 48 48 H 1.08009 * 119.99758 * 179.97438 * 26 25 24 49 49 H 1.08993 * 109.47483 * 270.17069 * 28 27 22 50 50 H 1.09000 * 109.47276 * 30.18132 * 28 27 22 51 51 H 1.09006 * 109.46649 * 150.17162 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4105 1.9278 -1.9627 6 6 3.2112 2.9288 -1.3728 7 7 4.3026 2.7979 -0.6490 8 14 3.0994 4.2795 -2.6584 9 1 2.5377 5.5069 -2.0394 10 1 4.4550 4.5695 -3.1908 11 1 2.2167 3.8357 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5650 4.0765 3.7891 16 8 -0.5678 4.1559 3.3632 17 6 0.9301 4.7466 5.0886 18 1 1.7188 5.4777 4.9114 19 6 1.4240 3.6946 6.0837 20 8 -0.2193 5.4055 5.6242 21 6 0.0851 6.5654 6.4014 22 6 -1.1936 7.1765 6.9139 23 6 -2.4099 6.5978 6.6018 24 6 -3.5822 7.1550 7.0766 25 6 -3.5390 8.2942 7.8588 26 6 -2.3234 8.8756 8.1664 27 6 -1.1506 8.3179 7.6921 28 6 0.1748 8.9518 8.0274 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 5.0489 3.4030 -0.7829 35 1 3.1617 2.7640 1.0860 36 1 2.7255 1.2832 1.9721 37 1 0.3541 2.0068 2.0139 38 1 0.7904 3.4876 1.1278 39 1 2.4035 3.3260 3.4407 40 1 2.3008 3.1917 5.6755 41 1 1.6885 4.1793 7.0236 42 1 0.6354 2.9634 6.2609 43 1 0.6116 7.2906 5.7809 44 1 0.7157 6.2828 7.2443 45 1 -2.4435 5.7077 5.9911 46 1 -4.5321 6.7007 6.8363 47 1 -4.4552 8.7298 8.2294 48 1 -2.2897 9.7658 8.7771 49 1 0.5588 8.5231 8.9530 50 1 0.8819 8.7646 7.2193 51 1 0.0422 10.0265 8.1523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266406019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:20 Heat of formation + Delta-G solvation = -65.848516 kcal Electronic energy + Delta-G solvation = -28526.827129 eV Core-core repulsion = 24618.776994 eV Total energy + Delta-G solvation = -3908.050134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.10655 -40.42768 -38.65317 -37.98404 -35.68792 -34.07461 -33.84225 -33.24361 -31.91832 -30.98078 -29.17807 -28.09594 -26.96533 -26.29514 -25.09400 -23.37006 -22.74397 -22.15354 -21.80793 -21.28504 -18.85672 -18.26728 -18.10679 -17.28851 -17.08160 -16.74688 -16.60904 -16.24542 -15.89498 -15.69562 -15.63735 -15.33704 -15.09671 -14.73460 -14.37114 -14.30049 -14.12207 -13.95626 -13.79029 -13.65338 -13.39130 -13.23722 -13.13296 -13.08171 -13.02088 -12.81475 -12.65559 -12.43433 -12.35103 -12.30594 -12.03683 -11.89283 -11.70352 -11.68177 -11.50139 -11.12447 -10.60126 -10.55311 -10.05551 -9.69242 -9.47499 -8.60737 -7.86915 -5.49523 0.38934 0.47558 1.42769 1.47085 1.53674 1.57472 1.83949 2.48125 2.81619 2.82900 3.20659 3.58540 3.78430 3.86498 3.93229 3.97300 4.04956 4.08976 4.20520 4.30710 4.31309 4.41355 4.42300 4.46502 4.48739 4.62027 4.71898 4.73078 4.80823 4.81741 4.83811 4.85068 4.88208 4.96045 5.07611 5.14231 5.19078 5.22346 5.27897 5.30819 5.39771 5.52329 5.55333 5.61748 5.65428 5.66490 5.73997 6.07595 6.14557 6.44429 6.60472 7.13910 7.25149 7.81938 8.34042 9.08993 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.002247 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.450288 B =12455.867008 C =12961.193340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.270 4.270 5 H 0.050 0.950 6 C -0.028 4.028 7 N -0.909 5.909 8 Si 0.950 3.050 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.146 3.854 13 C 0.120 3.880 14 N -0.707 5.707 15 C 0.502 3.498 16 O -0.582 6.582 17 C 0.077 3.923 18 H 0.116 0.884 19 C -0.163 4.163 20 O -0.382 6.382 21 C 0.099 3.901 22 C -0.107 4.107 23 C -0.117 4.117 24 C -0.141 4.141 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.088 4.088 28 C -0.117 4.117 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.414 0.586 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.129 0.871 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 9.581 22.504 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.400 4.400 5 H 0.068 0.932 6 C -0.226 4.226 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.217 1.217 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.019 3.981 13 C -0.006 4.006 14 N -0.360 5.360 15 C 0.289 3.711 16 O -0.461 6.461 17 C 0.016 3.984 18 H 0.134 0.866 19 C -0.220 4.220 20 O -0.301 6.301 21 C 0.024 3.976 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.159 4.159 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.088 4.088 28 C -0.174 4.174 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.251 0.749 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.147 0.853 47 H 0.162 0.838 48 H 0.166 0.834 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.027 9.606 22.127 24.864 hybrid contribution 0.217 0.541 -1.063 1.212 sum -5.811 10.147 21.064 24.092 Atomic orbital electron populations 1.22227 0.98174 1.00837 1.00273 1.21012 0.93013 0.85447 0.99383 1.43857 1.76349 1.09649 1.02029 1.19149 1.04347 1.21809 0.94742 0.93219 1.25735 0.94029 1.02764 1.00048 1.70072 1.03482 1.37832 1.43806 0.85554 0.76816 0.80107 0.79692 1.21700 1.21329 1.19827 1.20936 0.94193 0.96834 0.86186 1.21938 1.00078 0.95231 0.83373 1.45867 1.13945 1.52950 1.23265 1.21205 0.84871 0.78668 0.86368 1.90679 1.22689 1.61843 1.70878 1.21991 0.89286 0.96572 0.90573 0.86636 1.22234 1.02067 0.98210 0.99533 1.87996 1.30663 1.42214 1.69195 1.21507 0.94699 0.86405 0.95021 1.19734 0.94538 0.96639 0.99801 1.21084 0.92943 1.00104 0.99363 1.21383 0.98235 0.97333 0.98992 1.21468 0.99108 0.95531 0.97882 1.21336 0.91555 1.00954 1.00615 1.19964 0.97491 0.94330 0.97019 1.20903 0.92428 1.01321 1.02719 0.94204 0.94790 0.91207 0.94402 0.92813 0.93612 0.90672 0.93334 0.93577 0.95545 0.74920 0.88939 0.88773 0.92691 0.90899 0.89184 0.87332 0.85331 0.83789 0.83386 0.89609 0.91086 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 10.21 71.98 0.73 -4.95 16 2 C 0.14 5.61 6.44 86.38 0.56 6.17 16 3 N -0.60 -28.99 2.43 -702.00 -1.71 -30.70 16 4 C -0.27 -14.65 9.45 84.04 0.79 -13.86 16 5 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 6 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 7 N -0.91 -50.32 11.47 21.65 0.25 -50.07 16 8 Si 0.95 44.33 29.60 68.60 2.03 46.36 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.15 6.38 5.45 86.38 0.47 6.85 16 13 C 0.12 4.95 6.00 86.38 0.52 5.47 16 14 N -0.71 -23.00 5.45 -463.07 -2.52 -25.52 16 15 C 0.50 17.19 7.23 87.66 0.63 17.82 16 16 O -0.58 -26.28 16.50 16.00 0.26 -26.01 16 17 C 0.08 1.81 3.14 29.85 0.09 1.91 16 18 H 0.12 2.04 7.79 -2.39 -0.02 2.02 16 19 C -0.16 -2.76 9.42 71.98 0.68 -2.09 16 20 O -0.38 -10.50 8.00 -129.94 -1.04 -11.54 16 21 C 0.10 1.98 4.86 71.24 0.35 2.33 16 22 C -0.11 -2.41 5.88 -19.87 -0.12 -2.53 16 23 C -0.12 -3.06 9.38 22.27 0.21 -2.85 16 24 C -0.14 -3.09 10.05 22.27 0.22 -2.87 16 25 C -0.12 -2.13 10.05 22.27 0.22 -1.90 16 26 C -0.13 -2.03 9.70 22.27 0.22 -1.82 16 27 C -0.09 -1.55 5.88 -19.87 -0.12 -1.66 16 28 C -0.12 -1.28 9.60 71.24 0.68 -0.59 16 29 H 0.04 1.48 6.64 -2.38 -0.02 1.46 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 33 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 34 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 35 H 0.08 3.70 5.52 -2.39 -0.01 3.69 16 36 H 0.05 1.91 7.86 -2.39 -0.02 1.89 16 37 H 0.05 1.96 6.64 -2.39 -0.02 1.94 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.41 10.50 7.89 -92.71 -0.73 9.77 16 40 H 0.09 1.24 7.57 -2.38 -0.02 1.23 16 41 H 0.09 1.12 7.87 -2.38 -0.02 1.10 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.29 7.42 -2.39 -0.02 1.28 16 44 H 0.09 1.28 7.87 -2.39 -0.02 1.26 16 45 H 0.11 3.37 7.01 -2.91 -0.02 3.35 16 46 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 48 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.73 6.64 -2.39 -0.02 0.71 16 51 H 0.08 0.68 8.09 -2.38 -0.02 0.66 16 Total: -1.00 -72.89 414.29 4.02 -68.87 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.18 Total: 24.24 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 6.57 Total: 4.36 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -3.98 Total: -106.29 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.78 Total: -37.55 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.89 4.02 -68.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266406019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.024 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds