Wall clock time and date at job start Tue Mar 31 2020 19:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47183 * 2 1 4 4 C 1.35898 * 116.99973 * 179.97438 * 3 2 1 5 5 C 1.38755 * 120.05911 * 0.02793 * 4 3 2 6 6 C 1.38117 * 119.94491 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.05763 * 359.75139 * 6 5 4 8 8 C 1.38242 * 120.11147 * 0.50537 * 7 6 5 9 9 C 1.50696 * 119.97334 * 179.77142 * 8 7 6 10 10 C 1.53002 * 109.46919 * 269.71938 * 9 8 7 11 11 C 1.50696 * 109.47300 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99828 * 0.28058 * 13 11 10 15 15 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 16 16 H 1.08995 * 109.47304 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47021 * 240.00060 * 15 13 11 18 18 C 1.52998 * 109.46656 * 120.00305 * 15 13 11 19 19 N 1.46495 * 109.47380 * 304.99620 * 18 15 13 20 20 C 1.36942 * 120.00258 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99432 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00106 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00263 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99800 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47269 * 60.00228 * 24 22 20 26 26 H 1.48505 * 109.46955 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47136 * 299.99843 * 24 22 20 28 28 C 1.38168 * 120.05130 * 359.48925 * 8 7 6 29 29 H 1.09000 * 109.46813 * 59.99701 * 1 2 3 30 30 H 1.08998 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46966 * 299.99623 * 1 2 3 32 32 H 1.09006 * 109.47238 * 240.00483 * 2 1 3 33 33 H 1.08996 * 109.47391 * 120.00755 * 2 1 3 34 34 H 1.08000 * 120.02495 * 359.95795 * 5 4 3 35 35 H 1.08000 * 119.97354 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94354 * 180.27126 * 7 6 5 37 37 H 1.09000 * 109.47319 * 149.72706 * 9 8 7 38 38 H 1.08987 * 109.47394 * 29.71861 * 9 8 7 39 39 H 1.09004 * 109.46930 * 60.00101 * 10 9 8 40 40 H 1.09000 * 109.47312 * 300.00045 * 10 9 8 41 41 H 1.08998 * 109.46661 * 269.71691 * 14 13 11 42 42 H 1.08993 * 109.47575 * 29.72405 * 14 13 11 43 43 H 1.09001 * 109.46870 * 149.72361 * 14 13 11 44 44 H 1.08995 * 109.47505 * 300.00396 * 17 15 13 45 45 H 1.09001 * 109.47000 * 60.00883 * 17 15 13 46 46 H 1.09002 * 109.46917 * 180.02562 * 17 15 13 47 47 H 1.09004 * 109.47474 * 65.00410 * 18 15 13 48 48 H 1.09000 * 109.47041 * 184.99588 * 18 15 13 49 49 H 0.96998 * 120.00332 * 0.02562 * 19 18 15 50 50 H 0.97003 * 120.00449 * 179.97438 * 23 22 20 51 51 H 1.08002 * 120.02486 * 180.23157 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.2000 0.4258 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0962 1.8879 -0.0046 8 6 5.2552 2.9850 0.0008 9 6 5.8332 4.3767 0.0004 10 6 6.0286 4.8481 1.4428 11 6 6.6073 6.2396 1.4425 12 8 6.8400 6.7994 0.3921 13 7 6.8652 6.8624 2.6096 14 6 6.5888 6.1843 3.8784 15 6 7.4282 8.2150 2.6092 16 1 7.5684 8.5499 1.5815 17 6 8.7769 8.2061 3.3316 18 6 6.4703 9.1662 3.3291 19 7 5.1449 9.0852 2.7104 20 6 4.1170 9.8522 3.1905 21 1 4.2837 10.5172 4.0251 22 6 2.8610 9.7749 2.6047 23 7 2.6578 8.9642 1.5880 24 14 1.4592 10.8218 3.2592 25 1 1.8196 12.2579 3.1470 26 1 0.2316 10.5567 2.4666 27 1 1.2119 10.4832 4.6838 28 6 3.8851 2.8066 0.0007 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7886 -0.5728 0.0007 35 1 6.2280 -0.2460 0.0000 36 1 7.1669 2.0293 -0.0090 37 1 5.1507 5.0535 -0.5136 38 1 6.7944 4.3708 -0.5132 39 1 6.7112 4.1713 1.9569 40 1 5.0673 4.8541 1.9565 41 1 5.5714 6.4108 4.1972 42 1 6.6971 5.1079 3.7463 43 1 7.2923 6.5300 4.6358 44 1 8.6364 7.8713 4.3593 45 1 9.4594 7.5284 2.8187 46 1 9.1956 9.2125 3.3318 47 1 6.3989 8.8839 4.3795 48 1 6.8454 10.1867 3.2520 49 1 4.9950 8.4876 1.9612 50 1 1.7800 8.9099 1.1788 51 1 3.2284 3.6641 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268097725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:03 Heat of formation + Delta-G solvation = -67.513816 kcal Electronic energy + Delta-G solvation = -28845.279174 eV Core-core repulsion = 24937.156827 eV Total energy + Delta-G solvation = -3908.122347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.28410 -40.91873 -38.82769 -37.84706 -35.82857 -34.85186 -33.49523 -32.88743 -31.91742 -30.78331 -30.09184 -27.78604 -27.36120 -26.12563 -24.54407 -24.19675 -23.46999 -22.22291 -21.40367 -19.95781 -19.10487 -18.93077 -18.03669 -17.18134 -17.14134 -17.02469 -16.98483 -16.58479 -16.55460 -15.57470 -15.30041 -15.10905 -14.94028 -14.61510 -14.32477 -14.28982 -14.18880 -13.82435 -13.71077 -13.60255 -13.45705 -13.36876 -13.26004 -13.01862 -12.95193 -12.75214 -12.58590 -12.51415 -12.50494 -12.42514 -12.18650 -11.98861 -11.79915 -11.71543 -11.64272 -11.60807 -10.98841 -10.72992 -9.77793 -9.53551 -9.13757 -9.00761 -7.94105 -5.24332 0.34045 0.50471 1.43586 1.47679 1.53945 1.70994 2.13372 2.28026 2.54588 2.80307 3.38401 3.52358 3.82908 3.87344 3.96852 4.04356 4.04841 4.11172 4.12196 4.18751 4.25603 4.32119 4.36267 4.37927 4.45418 4.47838 4.48735 4.55401 4.66248 4.75180 4.80681 4.83506 4.86927 4.91730 4.92926 4.98462 5.05345 5.07219 5.16777 5.17803 5.20386 5.33459 5.37736 5.46234 5.50156 5.69771 5.71110 5.88141 6.25127 6.50748 6.50853 7.27461 7.31877 8.08920 8.31954 9.28622 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.003120 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.312315 B = 8973.419731 C =11518.392825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.343 6.343 4 C 0.117 3.883 5 C -0.213 4.213 6 C -0.073 4.073 7 C -0.154 4.154 8 C -0.042 4.042 9 C -0.059 4.059 10 C -0.118 4.118 11 C 0.506 3.494 12 O -0.590 6.590 13 N -0.599 5.599 14 C 0.077 3.923 15 C 0.127 3.873 16 H 0.065 0.935 17 C -0.141 4.141 18 C 0.142 3.858 19 N -0.742 5.742 20 C -0.246 4.246 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.975 3.025 25 H -0.278 1.278 26 H -0.298 1.298 27 H -0.273 1.273 28 C -0.176 4.176 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.035 0.965 48 H 0.028 0.972 49 H 0.371 0.629 50 H 0.249 0.751 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -23.294 2.137 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.258 6.258 4 C 0.072 3.928 5 C -0.231 4.231 6 C -0.091 4.091 7 C -0.172 4.172 8 C -0.043 4.043 9 C -0.097 4.097 10 C -0.158 4.158 11 C 0.296 3.704 12 O -0.471 6.471 13 N -0.331 5.331 14 C -0.065 4.065 15 C 0.023 3.977 16 H 0.084 0.916 17 C -0.199 4.199 18 C 0.015 3.985 19 N -0.385 5.385 20 C -0.378 4.378 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.804 3.196 25 H -0.205 1.205 26 H -0.224 1.224 27 H -0.199 1.199 28 C -0.195 4.195 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.202 0.798 50 H 0.057 0.943 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.301 -22.729 1.746 24.260 hybrid contribution -1.438 0.823 -0.290 1.682 sum 6.863 -21.906 1.456 23.002 Atomic orbital electron populations 1.21829 0.92040 1.04225 1.02840 1.23070 0.96592 0.80636 1.02520 1.86088 1.19349 1.31683 1.88710 1.19117 0.82741 0.94271 0.96673 1.21503 0.94683 0.98121 1.08808 1.21307 0.94341 0.97796 0.95624 1.21230 1.00585 0.91622 1.03785 1.19610 0.91968 0.95450 0.97222 1.20230 1.01665 0.92010 0.95797 1.21590 1.02875 0.92414 0.98881 1.21198 0.76953 0.89151 0.83060 1.90650 1.55002 1.68738 1.32680 1.47824 1.62655 1.15731 1.06887 1.21926 1.01278 0.98358 0.84950 1.21264 0.94005 0.81841 1.00551 0.91648 1.21960 0.93528 1.03452 1.01002 1.21209 0.85024 0.96541 0.95758 1.42518 1.06512 1.50365 1.39094 1.19617 0.89849 1.16601 1.11697 0.90420 1.25612 1.00457 1.01747 0.99057 1.69870 1.22553 1.42686 1.26855 0.85190 0.78370 0.78469 0.77584 1.20451 1.22447 1.19924 1.20421 0.95440 0.95213 1.08407 0.92327 0.87662 0.92396 0.90708 0.90696 0.83172 0.82318 0.83618 0.93308 0.89519 0.85353 0.89484 0.94457 0.88436 0.88722 0.90296 0.91601 0.90307 0.94666 0.95463 0.79752 0.94272 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.75 5.46 71.98 0.39 1.15 16 3 O -0.34 -9.05 10.14 -92.40 -0.94 -9.99 16 4 C 0.12 3.07 6.69 22.51 0.15 3.22 16 5 C -0.21 -4.07 9.04 22.36 0.20 -3.87 16 6 C -0.07 -1.22 10.04 22.25 0.22 -0.99 16 7 C -0.15 -3.06 9.70 22.28 0.22 -2.84 16 8 C -0.04 -1.11 5.13 -19.88 -0.10 -1.22 16 9 C -0.06 -1.76 4.63 29.85 0.14 -1.63 16 10 C -0.12 -3.40 4.24 29.85 0.13 -3.27 16 11 C 0.51 18.74 7.38 87.66 0.65 19.39 16 12 O -0.59 -27.01 15.31 -3.04 -0.05 -27.06 16 13 N -0.60 -19.95 2.24 -822.61 -1.85 -21.80 16 14 C 0.08 1.94 9.42 127.77 1.20 3.15 16 15 C 0.13 4.44 2.80 44.99 0.13 4.56 16 16 H 0.07 2.74 6.90 -2.39 -0.02 2.72 16 17 C -0.14 -3.33 9.17 71.98 0.66 -2.67 16 18 C 0.14 5.84 5.56 86.38 0.48 6.32 16 19 N -0.74 -40.10 5.43 -343.46 -1.87 -41.97 16 20 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 21 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 23 N -0.97 -62.97 13.06 21.65 0.28 -62.69 16 24 Si 0.98 47.95 29.55 68.60 2.03 49.97 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 27 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 28 C -0.18 -5.28 9.64 22.37 0.22 -5.07 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.97 7.66 -2.38 -0.02 0.96 16 33 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 34 H 0.15 1.98 6.30 -2.91 -0.02 1.96 16 35 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16 38 H 0.09 2.42 8.04 -2.39 -0.02 2.40 16 39 H 0.13 2.60 7.39 -2.38 -0.02 2.58 16 40 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 1.80 6.43 -2.39 -0.02 1.79 16 43 H 0.09 1.88 6.41 -2.39 -0.02 1.86 16 44 H 0.08 1.54 6.65 -2.39 -0.02 1.52 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.04 1.36 7.84 -2.38 -0.02 1.34 16 48 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.37 22.18 7.06 -92.71 -0.65 21.53 16 50 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 51 H 0.10 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -81.02 413.54 4.59 -76.42 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: 0.25 Total: 39.86 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.73 Total: -2.75 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -3.43 Total: -126.46 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.98 Total: -37.05 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.97 kcal Total: -81.02 4.59 -76.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268097725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.907 kcal (2) G-P(sol) polarization free energy of solvation -81.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds