Wall clock time and date at job start Tue Mar 31 2020 19:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46974 * 2 1 4 4 C 1.35713 * 117.00201 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91397 * 180.02562 * 4 3 2 6 6 C 1.37703 * 120.08847 * 180.02562 * 5 4 3 7 7 C 1.39731 * 119.90849 * 359.97438 * 6 5 4 8 8 C 1.47613 * 120.08399 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00181 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00370 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46974 * 34.99498 * 11 10 8 13 13 C 1.52992 * 109.47350 * 154.99569 * 11 10 8 14 14 N 1.46499 * 109.47267 * 304.99849 * 13 11 10 15 15 C 1.36935 * 119.99938 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.53001 * 109.46890 * 274.99599 * 11 10 8 24 24 C 1.53003 * 109.47040 * 64.99750 * 23 11 10 25 25 C 1.52993 * 109.47281 * 65.00063 * 24 23 11 26 26 C 1.53002 * 109.47298 * 185.00253 * 24 23 11 27 27 C 1.39727 * 119.82784 * 0.27909 * 7 6 5 28 28 C 1.37705 * 119.90976 * 359.46644 * 27 7 6 29 29 H 1.09000 * 109.46642 * 299.99529 * 1 2 3 30 30 H 1.08989 * 109.47675 * 59.99283 * 1 2 3 31 31 H 1.08998 * 109.46665 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46645 * 240.01074 * 2 1 3 33 33 H 1.08989 * 109.47675 * 120.00717 * 2 1 3 34 34 H 1.07999 * 119.95455 * 359.97326 * 5 4 3 35 35 H 1.08000 * 120.04408 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99405 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47330 * 184.99753 * 13 11 10 38 38 H 1.09005 * 109.47124 * 64.99957 * 13 11 10 39 39 H 0.96999 * 119.99984 * 359.97438 * 14 13 11 40 40 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.47337 * 184.99748 * 23 11 10 42 42 H 1.09005 * 109.46871 * 304.99972 * 23 11 10 43 43 H 1.09002 * 109.47376 * 304.99636 * 24 23 11 44 44 H 1.09003 * 109.47427 * 300.00213 * 25 24 23 45 45 H 1.09002 * 109.47264 * 59.99504 * 25 24 23 46 46 H 1.09004 * 109.47637 * 179.97438 * 25 24 23 47 47 H 1.09004 * 109.47264 * 59.99416 * 26 24 23 48 48 H 1.08993 * 109.47193 * 179.97438 * 26 24 23 49 49 H 1.09009 * 109.46747 * 300.00162 * 26 24 23 50 50 H 1.08004 * 120.04571 * 179.70328 * 27 7 6 51 51 H 1.07999 * 119.95510 * 180.25939 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 3.8810 2.8104 0.0000 6 6 5.2456 2.9951 -0.0011 7 6 6.0984 1.8882 -0.0022 8 6 7.5618 2.0817 -0.0028 9 8 8.0265 3.2052 -0.0028 10 7 8.3828 1.0129 -0.0043 11 6 9.8352 1.2048 -0.0043 12 1 10.0852 2.0863 0.5861 13 6 10.5122 -0.0251 0.6036 14 7 9.9568 -0.2802 1.9350 15 6 10.4124 -1.3379 2.6758 16 1 11.1781 -1.9867 2.2768 17 6 9.8865 -1.5793 3.9376 18 7 8.9496 -0.7919 4.4217 19 14 10.5076 -3.0226 4.9478 20 1 11.5538 -3.7482 4.1835 21 1 11.0831 -2.5234 6.2226 22 1 9.3799 -3.9434 5.2409 23 6 10.3240 1.3981 -1.4412 24 6 9.7441 2.6960 -2.0070 25 6 10.3024 3.8872 -1.2259 26 6 10.1302 2.8269 -3.4817 27 6 5.5624 0.5978 -0.0080 28 6 4.1967 0.4216 -0.0016 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8902 33 1 1.8934 -0.5139 0.8898 34 1 3.2211 3.6653 0.0004 35 1 5.6560 3.9940 -0.0011 36 1 8.0120 0.1165 -0.0047 37 1 11.5844 0.1535 0.6853 38 1 10.3356 -0.8902 -0.0356 39 1 9.2663 0.3002 2.2918 40 1 8.5818 -0.9608 5.3032 41 1 11.4126 1.4521 -1.4505 42 1 9.9967 0.5570 -2.0525 43 1 8.6580 2.6787 -1.9161 44 1 10.0274 3.7939 -0.1753 45 1 11.3885 3.9044 -1.3168 46 1 9.8897 4.8119 -1.6293 47 1 9.7325 1.9782 -4.0382 48 1 9.7168 3.7513 -3.8848 49 1 11.2164 2.8442 -3.5727 50 1 6.2184 -0.2602 -0.0137 51 1 3.7817 -0.5755 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268115321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:59 Heat of formation + Delta-G solvation = -52.464111 kcal Electronic energy + Delta-G solvation = -29355.043713 eV Core-core repulsion = 25447.573970 eV Total energy + Delta-G solvation = -3907.469743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.50256 -39.65835 -37.55773 -36.32878 -34.93439 -33.48623 -32.29982 -31.35465 -30.89275 -29.91469 -28.70034 -26.84508 -25.54359 -24.40999 -23.54332 -22.79385 -21.97120 -20.78271 -20.06713 -19.63237 -18.52802 -17.56481 -16.95493 -16.35410 -16.30576 -15.62491 -15.36628 -14.96132 -14.62733 -14.13372 -14.06742 -13.78408 -13.67605 -13.59757 -13.41071 -13.29111 -12.99780 -12.91721 -12.86862 -12.44105 -12.19374 -11.99139 -11.95666 -11.90878 -11.83081 -11.47239 -11.05257 -10.96168 -10.92734 -10.87675 -10.82316 -10.48690 -10.21044 -10.19073 -9.96776 -9.72440 -9.44803 -9.11039 -8.93241 -8.59042 -8.24215 -6.96800 -5.78962 -3.08846 0.97962 1.30820 2.95518 3.08487 3.40541 3.46588 3.48818 3.55608 3.98740 4.55128 4.57839 4.62860 4.73106 4.83061 4.94454 4.95599 5.04893 5.15145 5.21788 5.23121 5.27470 5.38784 5.47438 5.53028 5.58871 5.64028 5.68655 5.71169 5.74988 5.90572 5.91530 5.99210 6.07348 6.10000 6.14008 6.15661 6.21127 6.24822 6.33552 6.39611 6.47557 6.52452 6.61490 6.68785 6.72850 6.89479 7.01408 7.22064 7.67448 7.94188 8.38628 8.62521 9.50633 10.06930 10.42457 11.43164 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006852 B = 0.003956 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.197327 B = 7075.281209 C =10408.528512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.315 6.315 4 C 0.150 3.850 5 C -0.164 4.164 6 C -0.021 4.021 7 C -0.166 4.166 8 C 0.560 3.440 9 O -0.537 6.537 10 N -0.705 5.705 11 C 0.137 3.863 12 H 0.092 0.908 13 C 0.143 3.857 14 N -0.731 5.731 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.122 4.122 24 C -0.093 4.093 25 C -0.138 4.138 26 C -0.146 4.146 27 C -0.038 4.038 28 C -0.217 4.217 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.401 0.599 37 H 0.033 0.967 38 H 0.023 0.977 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.049 0.951 50 H 0.132 0.868 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 4.137 -14.605 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.229 6.229 4 C 0.104 3.896 5 C -0.183 4.183 6 C -0.040 4.040 7 C -0.170 4.170 8 C 0.348 3.652 9 O -0.416 6.416 10 N -0.356 5.356 11 C 0.032 3.968 12 H 0.110 0.890 13 C 0.015 3.985 14 N -0.376 5.376 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.161 4.161 24 C -0.111 4.111 25 C -0.195 4.195 26 C -0.203 4.203 27 C -0.057 4.057 28 C -0.235 4.235 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.237 0.763 37 H 0.051 0.949 38 H 0.041 0.959 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.149 0.851 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.570 4.906 -14.550 19.226 hybrid contribution -0.011 -1.476 0.845 1.701 sum -11.581 3.430 -13.706 18.268 Atomic orbital electron populations 1.21775 0.92702 1.02915 1.03495 1.22842 0.95899 0.81827 1.01809 1.86020 1.19154 1.29600 1.88084 1.19228 0.82160 0.94226 0.93989 1.20360 0.95046 0.94764 1.08138 1.21053 0.91396 0.99165 0.92382 1.19942 0.93687 0.93890 1.09454 1.18047 0.85910 0.85032 0.76191 1.90742 1.76911 1.23551 1.50441 1.45881 1.06722 1.09029 1.73984 1.21375 0.79053 1.00456 0.95917 0.89028 1.20973 0.96143 0.93251 0.88105 1.42364 1.47006 1.34476 1.13772 1.19253 1.16918 1.04141 0.97008 0.91135 1.24747 0.99134 0.99225 0.97682 1.69681 1.30280 1.39479 1.18307 0.86140 0.77858 0.81985 0.80315 1.20566 1.21861 1.21923 1.22020 1.00668 0.97604 0.95788 1.21142 1.01371 0.94887 0.93737 1.21829 0.98536 0.96794 1.02322 1.21869 1.00900 1.00826 0.96728 1.21177 0.94670 0.96532 0.93321 1.21156 0.94101 0.98214 1.10050 0.91456 0.91576 0.90309 0.91830 0.91606 0.84797 0.84014 0.76339 0.94912 0.95925 0.77942 0.93553 0.91183 0.92052 0.90582 0.90458 0.94383 0.93880 0.93399 0.93273 0.93167 0.85069 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.43 5.45 37.16 0.20 0.63 16 3 O -0.32 -3.58 10.12 -18.85 -0.19 -3.77 16 4 C 0.15 1.86 6.70 -39.02 -0.26 1.59 16 5 C -0.16 -2.02 9.97 -39.50 -0.39 -2.42 16 6 C -0.02 -0.28 9.58 -39.22 -0.38 -0.66 16 7 C -0.17 -2.45 5.87 -104.96 -0.62 -3.06 16 8 C 0.56 9.21 6.32 -12.44 -0.08 9.13 16 9 O -0.54 -9.71 11.29 5.29 0.06 -9.65 16 10 N -0.71 -11.26 4.42 -54.83 -0.24 -11.50 16 11 C 0.14 2.26 2.33 -67.94 -0.16 2.10 16 12 H 0.09 1.71 5.92 -51.93 -0.31 1.41 16 13 C 0.14 2.76 5.82 -4.05 -0.02 2.74 16 14 N -0.73 -17.92 5.43 -59.91 -0.33 -18.25 16 15 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 19 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 C -0.12 -1.69 4.36 -26.73 -0.12 -1.80 16 24 C -0.09 -1.28 2.38 -90.62 -0.22 -1.50 16 25 C -0.14 -2.00 8.03 37.15 0.30 -1.70 16 26 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 27 C -0.04 -0.51 9.53 -39.22 -0.37 -0.88 16 28 C -0.22 -2.62 9.01 -39.50 -0.36 -2.98 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.41 8.14 -51.94 -0.42 -0.01 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.46 7.65 -51.92 -0.40 0.06 16 33 H 0.07 0.53 7.65 -51.94 -0.40 0.13 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.14 1.83 7.64 -52.49 -0.40 1.43 16 36 H 0.40 6.14 6.62 -40.82 -0.27 5.87 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.39 10.17 7.33 -40.82 -0.30 9.87 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.18 5.19 -51.93 -0.27 0.91 16 44 H 0.08 1.30 4.76 -51.93 -0.25 1.05 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 50 H 0.13 1.62 6.40 -52.48 -0.34 1.28 16 51 H 0.13 1.30 6.28 -52.49 -0.33 0.97 16 LS Contribution 402.86 15.07 6.07 6.07 Total: -1.00 -31.46 402.86 -9.21 -40.67 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -8.30 Total: 14.36 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.99 Total: -7.94 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.16 Total: -56.83 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.13 Total: -13.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.46 -9.21 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268115321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.793 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds