Wall clock time and date at job start Tue Mar 31 2020 19:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46974 * 2 1 4 4 C 1.35713 * 117.00201 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91397 * 180.02562 * 4 3 2 6 6 C 1.37703 * 120.08847 * 180.02562 * 5 4 3 7 7 C 1.39731 * 119.90849 * 359.97438 * 6 5 4 8 8 C 1.47613 * 120.08399 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00181 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00370 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46974 * 34.99498 * 11 10 8 13 13 C 1.52992 * 109.47350 * 154.99569 * 11 10 8 14 14 N 1.46499 * 109.47267 * 304.99849 * 13 11 10 15 15 C 1.36935 * 119.99938 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.53001 * 109.46890 * 274.99599 * 11 10 8 24 24 C 1.53003 * 109.47040 * 64.99750 * 23 11 10 25 25 C 1.52993 * 109.47281 * 65.00063 * 24 23 11 26 26 C 1.53002 * 109.47298 * 185.00253 * 24 23 11 27 27 C 1.39727 * 119.82784 * 0.27909 * 7 6 5 28 28 C 1.37705 * 119.90976 * 359.46644 * 27 7 6 29 29 H 1.09000 * 109.46642 * 299.99529 * 1 2 3 30 30 H 1.08989 * 109.47675 * 59.99283 * 1 2 3 31 31 H 1.08998 * 109.46665 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46645 * 240.01074 * 2 1 3 33 33 H 1.08989 * 109.47675 * 120.00717 * 2 1 3 34 34 H 1.07999 * 119.95455 * 359.97326 * 5 4 3 35 35 H 1.08000 * 120.04408 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99405 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47330 * 184.99753 * 13 11 10 38 38 H 1.09005 * 109.47124 * 64.99957 * 13 11 10 39 39 H 0.96999 * 119.99984 * 359.97438 * 14 13 11 40 40 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.47337 * 184.99748 * 23 11 10 42 42 H 1.09005 * 109.46871 * 304.99972 * 23 11 10 43 43 H 1.09002 * 109.47376 * 304.99636 * 24 23 11 44 44 H 1.09003 * 109.47427 * 300.00213 * 25 24 23 45 45 H 1.09002 * 109.47264 * 59.99504 * 25 24 23 46 46 H 1.09004 * 109.47637 * 179.97438 * 25 24 23 47 47 H 1.09004 * 109.47264 * 59.99416 * 26 24 23 48 48 H 1.08993 * 109.47193 * 179.97438 * 26 24 23 49 49 H 1.09009 * 109.46747 * 300.00162 * 26 24 23 50 50 H 1.08004 * 120.04571 * 179.70328 * 27 7 6 51 51 H 1.07999 * 119.95510 * 180.25939 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 3.8810 2.8104 0.0000 6 6 5.2456 2.9951 -0.0011 7 6 6.0984 1.8882 -0.0022 8 6 7.5618 2.0817 -0.0028 9 8 8.0265 3.2052 -0.0028 10 7 8.3828 1.0129 -0.0043 11 6 9.8352 1.2048 -0.0043 12 1 10.0852 2.0863 0.5861 13 6 10.5122 -0.0251 0.6036 14 7 9.9568 -0.2802 1.9350 15 6 10.4124 -1.3379 2.6758 16 1 11.1781 -1.9867 2.2768 17 6 9.8865 -1.5793 3.9376 18 7 8.9496 -0.7919 4.4217 19 14 10.5076 -3.0226 4.9478 20 1 11.5538 -3.7482 4.1835 21 1 11.0831 -2.5234 6.2226 22 1 9.3799 -3.9434 5.2409 23 6 10.3240 1.3981 -1.4412 24 6 9.7441 2.6960 -2.0070 25 6 10.3024 3.8872 -1.2259 26 6 10.1302 2.8269 -3.4817 27 6 5.5624 0.5978 -0.0080 28 6 4.1967 0.4216 -0.0016 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8902 33 1 1.8934 -0.5139 0.8898 34 1 3.2211 3.6653 0.0004 35 1 5.6560 3.9940 -0.0011 36 1 8.0120 0.1165 -0.0047 37 1 11.5844 0.1535 0.6853 38 1 10.3356 -0.8902 -0.0356 39 1 9.2663 0.3002 2.2918 40 1 8.5818 -0.9608 5.3032 41 1 11.4126 1.4521 -1.4505 42 1 9.9967 0.5570 -2.0525 43 1 8.6580 2.6787 -1.9161 44 1 10.0274 3.7939 -0.1753 45 1 11.3885 3.9044 -1.3168 46 1 9.8897 4.8119 -1.6293 47 1 9.7325 1.9782 -4.0382 48 1 9.7168 3.7513 -3.8848 49 1 11.2164 2.8442 -3.5727 50 1 6.2184 -0.2602 -0.0137 51 1 3.7817 -0.5755 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268115321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:58 Heat of formation + Delta-G solvation = -70.697621 kcal Electronic energy + Delta-G solvation = -29355.834378 eV Core-core repulsion = 25447.573970 eV Total energy + Delta-G solvation = -3908.260407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58089 -40.75179 -38.61064 -37.59375 -36.42449 -35.05576 -33.31078 -32.74381 -31.95872 -31.18743 -29.94268 -27.92425 -27.17241 -25.31397 -24.71998 -24.35371 -22.98267 -22.03264 -21.30369 -20.77640 -19.53003 -19.19852 -18.42098 -17.47144 -17.10126 -16.89869 -16.63403 -16.40533 -15.92742 -15.52463 -15.28815 -15.16733 -14.84492 -14.62671 -14.49042 -14.47527 -14.34519 -14.16807 -13.71868 -13.63816 -13.27719 -13.12347 -13.01122 -12.94023 -12.84809 -12.81694 -12.64358 -12.51897 -12.31151 -12.04527 -11.88112 -11.77218 -11.67391 -11.60006 -11.36484 -11.21545 -10.98279 -10.72319 -10.10990 -9.88763 -9.25419 -8.99841 -7.93069 -5.22640 -0.08592 0.31109 1.48042 1.49300 1.58894 1.92557 2.15189 2.30593 2.56706 2.88065 3.41231 3.64553 3.69999 3.83294 3.87668 4.02460 4.05787 4.11103 4.12137 4.22482 4.26709 4.36595 4.38898 4.40600 4.44061 4.54516 4.69114 4.82833 4.85389 4.90500 4.91376 4.93008 4.94855 4.95299 5.01467 5.08735 5.11826 5.18686 5.18782 5.27016 5.28247 5.36640 5.41735 5.52304 5.60617 5.61469 5.68206 5.71694 6.27287 6.34104 6.66683 7.34791 7.35382 8.08698 8.32634 9.29923 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006852 B = 0.003956 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.197327 B = 7075.281209 C =10408.528512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.151 3.849 5 C -0.167 4.167 6 C -0.027 4.027 7 C -0.188 4.188 8 C 0.557 3.443 9 O -0.560 6.560 10 N -0.703 5.703 11 C 0.147 3.853 12 H 0.066 0.934 13 C 0.144 3.856 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.079 0.921 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.298 1.298 22 H -0.293 1.293 23 C -0.113 4.113 24 C -0.090 4.090 25 C -0.133 4.133 26 C -0.140 4.140 27 C -0.043 4.043 28 C -0.217 4.217 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.404 0.596 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.137 0.863 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 2.753 -16.094 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.237 6.237 4 C 0.104 3.896 5 C -0.185 4.185 6 C -0.046 4.046 7 C -0.192 4.192 8 C 0.346 3.654 9 O -0.441 6.441 10 N -0.354 5.354 11 C 0.042 3.958 12 H 0.084 0.916 13 C 0.017 3.983 14 N -0.386 5.386 15 C -0.373 4.373 16 H 0.097 0.903 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.189 1.189 21 H -0.226 1.226 22 H -0.220 1.220 23 C -0.152 4.152 24 C -0.109 4.109 25 C -0.190 4.190 26 C -0.197 4.197 27 C -0.062 4.062 28 C -0.235 4.235 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.240 0.760 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.155 0.845 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.842 3.501 -16.086 20.280 hybrid contribution 0.021 -1.028 1.265 1.630 sum -11.821 2.473 -14.821 19.119 Atomic orbital electron populations 1.21805 0.91202 1.04234 1.03328 1.23160 0.97148 0.80533 1.02576 1.86029 1.18334 1.31637 1.87682 1.19362 0.82859 0.94267 0.93113 1.20552 0.94711 0.95703 1.07555 1.21105 0.91972 0.98876 0.92673 1.19923 0.92703 0.95013 1.11522 1.18353 0.86751 0.84705 0.75608 1.90727 1.77465 1.24314 1.51568 1.45831 1.06471 1.09164 1.73950 1.21190 0.79391 0.97998 0.97229 0.91571 1.21125 0.96204 0.94886 0.86047 1.42537 1.46840 1.33688 1.15491 1.19658 1.16174 1.04313 0.97167 0.90343 1.25527 0.99888 1.02007 0.99092 1.69843 1.32039 1.41497 1.18422 0.85109 0.77444 0.78999 0.78389 1.18893 1.22589 1.22043 1.21959 1.01276 0.98193 0.93758 1.21074 1.00184 0.94366 0.95234 1.21759 0.99283 0.97282 1.00710 1.21806 1.01661 1.01447 0.94827 1.21282 0.95465 0.96105 0.93343 1.21392 0.93508 0.99368 1.09241 0.91918 0.91452 0.88240 0.90513 0.91338 0.83028 0.84181 0.75986 0.94578 0.94343 0.79380 0.94206 0.89990 0.90647 0.92412 0.93214 0.93162 0.93951 0.92455 0.92971 0.92077 0.84520 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.04 0.59 5.45 71.98 0.39 0.98 16 3 O -0.32 -6.87 10.12 -90.35 -0.91 -7.78 16 4 C 0.15 3.57 6.70 22.63 0.15 3.72 16 5 C -0.17 -4.02 9.97 22.32 0.22 -3.80 16 6 C -0.03 -0.75 9.58 22.50 0.22 -0.54 16 7 C -0.19 -5.66 5.87 -20.08 -0.12 -5.78 16 8 C 0.56 18.91 6.32 86.72 0.55 19.46 16 9 O -0.56 -21.14 11.29 -3.98 -0.04 -21.19 16 10 N -0.70 -22.80 4.42 -445.65 -1.97 -24.77 16 11 C 0.15 4.86 2.33 44.99 0.10 4.96 16 12 H 0.07 2.56 5.92 -2.39 -0.01 2.55 16 13 C 0.14 5.45 5.82 86.38 0.50 5.95 16 14 N -0.74 -36.54 5.43 -343.45 -1.87 -38.40 16 15 C -0.24 -13.07 9.99 84.04 0.84 -12.23 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 18 N -0.97 -58.83 13.06 21.65 0.28 -58.54 16 19 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 C -0.11 -2.98 4.36 30.60 0.13 -2.84 16 24 C -0.09 -2.42 2.38 -10.79 -0.03 -2.44 16 25 C -0.13 -3.87 8.03 71.98 0.58 -3.29 16 26 C -0.14 -3.00 9.19 71.98 0.66 -2.33 16 27 C -0.04 -1.14 9.53 22.50 0.21 -0.93 16 28 C -0.22 -5.01 9.01 22.33 0.20 -4.80 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.93 7.65 -2.38 -0.02 0.91 16 33 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 34 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.14 3.79 7.64 -2.91 -0.02 3.77 16 36 H 0.40 12.44 6.62 -92.70 -0.61 11.83 16 37 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.37 20.15 7.33 -92.71 -0.68 19.47 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.06 1.79 5.19 -2.39 -0.01 1.78 16 44 H 0.05 1.73 4.76 -2.39 -0.01 1.72 16 45 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.14 3.35 6.40 -2.91 -0.02 3.34 16 51 H 0.15 2.75 6.28 -2.91 -0.02 2.74 16 Total: -1.00 -67.59 402.86 2.99 -64.60 By element: Atomic # 1 Polarization: 47.37 SS G_CDS: -0.36 Total: 47.01 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 5.83 Total: -8.41 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -3.55 Total: -121.72 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.96 Total: -28.97 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -67.59 2.99 -64.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268115321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.096 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds