Wall clock time and date at job start Tue Mar 31 2020 19:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46571 * 2 1 4 4 C 1.35897 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38760 * 120.05659 * 359.73182 * 4 3 2 6 6 C 1.38118 * 119.94330 * 179.70019 * 5 4 3 7 7 C 1.38281 * 120.05702 * 0.59012 * 6 5 4 8 8 C 1.38243 * 120.11193 * 359.68160 * 7 6 5 9 9 C 1.50702 * 119.97370 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46950 * 270.02208 * 9 8 7 11 11 C 1.50702 * 109.46950 * 179.97438 * 10 9 8 12 12 O 1.21275 * 119.99861 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99700 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00133 * 0.02562 * 13 11 10 15 15 C 1.46498 * 119.99892 * 179.97438 * 13 11 10 16 16 C 1.52998 * 109.47046 * 89.99705 * 15 13 11 17 17 N 1.46505 * 109.47251 * 179.97438 * 16 15 13 18 18 C 1.46500 * 120.00015 * 270.00743 * 17 16 15 19 19 C 1.36935 * 119.99839 * 90.00136 * 17 16 15 20 20 H 1.08003 * 119.99900 * 20.36424 * 19 17 16 21 21 C 1.38814 * 120.00095 * 200.36555 * 19 17 16 22 22 N 1.31615 * 119.99692 * 14.98878 * 21 19 17 23 23 Si 1.86794 * 119.99927 * 194.98912 * 21 19 17 24 24 H 1.48504 * 109.47285 * 85.00239 * 23 21 19 25 25 H 1.48501 * 109.47314 * 205.00250 * 23 21 19 26 26 H 1.48506 * 109.47343 * 325.00020 * 23 21 19 27 27 C 1.38160 * 120.05411 * 0.02562 * 8 7 6 28 28 H 1.08998 * 109.47705 * 60.00586 * 1 2 3 29 29 H 1.09009 * 109.46688 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47295 * 299.99270 * 1 2 3 31 31 H 1.08997 * 109.47192 * 119.99507 * 2 1 3 32 32 H 1.08993 * 109.47487 * 240.00303 * 2 1 3 33 33 H 1.07997 * 120.02523 * 359.96780 * 5 4 3 34 34 H 1.08003 * 119.97072 * 180.29219 * 6 5 4 35 35 H 1.08003 * 119.94321 * 179.70285 * 7 6 5 36 36 H 1.09005 * 109.47054 * 30.01799 * 9 8 7 37 37 H 1.08991 * 109.47520 * 150.02306 * 9 8 7 38 38 H 1.08993 * 109.46862 * 300.00050 * 10 9 8 39 39 H 1.09003 * 109.47211 * 60.00056 * 10 9 8 40 40 H 1.08994 * 109.47539 * 89.99874 * 14 13 11 41 41 H 1.09002 * 109.46585 * 210.00037 * 14 13 11 42 42 H 1.09002 * 109.46907 * 329.99632 * 14 13 11 43 43 H 1.08996 * 109.47171 * 210.00009 * 15 13 11 44 44 H 1.09000 * 109.47258 * 330.00137 * 15 13 11 45 45 H 1.08996 * 109.47384 * 300.00174 * 16 15 13 46 46 H 1.09004 * 109.47098 * 60.00484 * 16 15 13 47 47 H 1.08999 * 109.47375 * 95.09398 * 18 17 16 48 48 H 1.09001 * 109.46335 * 215.09459 * 18 17 16 49 49 H 1.09002 * 109.46972 * 335.08990 * 18 17 16 50 50 H 0.97006 * 119.99868 * 180.02562 * 22 21 19 51 51 H 1.08005 * 120.02885 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3534 1.5255 0.0005 5 6 4.1999 0.4260 0.0067 6 6 5.5688 0.6098 0.0010 7 6 6.0960 1.8881 0.0014 8 6 5.2549 2.9852 0.0010 9 6 5.8328 4.3770 0.0010 10 6 6.0285 4.8481 1.4435 11 6 6.6070 6.2396 1.4435 12 8 6.8403 6.7992 0.3932 13 7 6.8651 6.8621 2.6107 14 6 6.5838 6.1858 3.8794 15 6 7.4280 8.2146 2.6107 16 6 6.2922 9.2397 2.6095 17 7 6.8551 10.5923 2.6101 18 6 7.1353 11.2685 3.8791 19 6 7.1194 11.2244 1.4245 20 1 6.6318 10.8976 0.5179 21 6 8.0140 12.2852 1.3878 22 7 8.8235 12.4987 2.4034 23 14 8.0689 13.4095 -0.1029 24 1 7.0382 14.4693 0.0381 25 1 9.4120 14.0353 -0.2017 26 1 7.8002 12.6178 -1.3302 27 6 3.8849 2.8068 0.0006 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 3.7886 -0.5726 0.0116 34 1 6.2280 -0.2457 0.0010 35 1 7.1667 2.0297 0.0018 36 1 6.7941 4.3713 -0.5129 37 1 5.1503 5.0539 -0.5128 38 1 5.0673 4.8538 1.9573 39 1 6.7111 4.1712 1.9573 40 1 7.4630 5.6239 4.1945 41 1 6.3349 6.9270 4.6389 42 1 5.7439 5.5033 3.7489 43 1 8.0413 8.3529 3.5010 44 1 8.0426 8.3524 1.7211 45 1 5.6789 9.1014 1.7191 46 1 5.6776 9.1020 3.4991 47 1 8.1802 11.1159 4.1492 48 1 6.9395 12.3355 3.7731 49 1 6.4946 10.8572 4.6592 50 1 9.4484 13.2402 2.3779 51 1 3.2281 3.6642 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268259129.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:52 Heat of formation + Delta-G solvation = -31.512922 kcal Electronic energy + Delta-G solvation = -28019.484965 eV Core-core repulsion = 24112.923733 eV Total energy + Delta-G solvation = -3906.561231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.49260 -39.60052 -38.05708 -36.05996 -34.80038 -33.91993 -32.38101 -31.46791 -30.28597 -29.61451 -28.37692 -26.40278 -25.83067 -25.15921 -23.82983 -22.84492 -22.67381 -20.89239 -20.39240 -18.72147 -18.16631 -16.80738 -16.56627 -16.47375 -16.38917 -16.29399 -15.72946 -15.51146 -14.73508 -14.49936 -13.96328 -13.80389 -13.67372 -13.55272 -13.42144 -13.29301 -13.00280 -12.90401 -12.62897 -12.52210 -12.43111 -12.28638 -12.01581 -11.94864 -11.73086 -11.66263 -11.28897 -11.10900 -11.05619 -10.93360 -10.83199 -10.76831 -10.46206 -10.09148 -9.86592 -9.72369 -9.46708 -9.02082 -8.56563 -8.44254 -8.28887 -6.71665 -5.66537 -3.09348 1.05399 1.20850 2.84189 2.95811 3.30571 3.46290 3.51320 3.53603 3.55409 4.41865 4.47428 4.48111 4.59461 4.65627 4.71613 4.81661 4.86811 4.98059 5.04745 5.07046 5.17876 5.20800 5.26982 5.33988 5.41026 5.46227 5.50901 5.52254 5.59615 5.70132 5.71551 5.75815 5.87270 5.89881 6.02377 6.11859 6.18444 6.29846 6.33640 6.43249 6.53708 6.67253 6.74923 6.83533 7.10716 7.13705 7.40317 7.73869 7.75475 7.91047 8.44972 8.54263 9.30589 9.93323 10.40456 11.39174 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.001896 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.158464 B =14761.433383 C =14907.923275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.130 3.870 5 C -0.216 4.216 6 C -0.079 4.079 7 C -0.154 4.154 8 C -0.037 4.037 9 C -0.068 4.068 10 C -0.131 4.131 11 C 0.505 3.495 12 O -0.533 6.533 13 N -0.615 5.615 14 C 0.079 3.921 15 C 0.092 3.908 16 C 0.144 3.856 17 N -0.599 5.599 18 C 0.163 3.837 19 C -0.249 4.249 20 H 0.071 0.929 21 C -0.001 4.001 22 N -0.911 5.911 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C -0.149 4.149 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.044 0.956 49 H -0.003 1.003 50 H 0.251 0.749 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 -28.962 0.810 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.085 3.915 5 C -0.235 4.235 6 C -0.097 4.097 7 C -0.172 4.172 8 C -0.037 4.037 9 C -0.106 4.106 10 C -0.171 4.171 11 C 0.292 3.708 12 O -0.410 6.410 13 N -0.349 5.349 14 C -0.065 4.065 15 C -0.032 4.032 16 C 0.016 3.984 17 N -0.322 5.322 18 C 0.018 3.982 19 C -0.379 4.379 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.556 5.556 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.167 4.167 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.015 0.985 50 H 0.062 0.938 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.334 -28.347 0.290 30.530 hybrid contribution 0.322 0.248 -0.540 0.676 sum -11.011 -28.099 -0.250 30.181 Atomic orbital electron populations 1.21783 0.92703 1.02840 1.03679 1.22768 0.95915 0.82037 1.01297 1.86083 1.19152 1.29210 1.88652 1.18968 0.82169 0.94102 0.96247 1.21199 0.94484 0.97841 1.09988 1.20913 0.94247 0.97243 0.97293 1.21015 0.99951 0.91933 1.04297 1.19753 0.92237 0.95667 0.96074 1.20390 1.02628 0.91512 0.96031 1.21658 1.02563 0.94453 0.98457 1.20582 0.78738 0.87716 0.83757 1.90741 1.52164 1.67268 1.30823 1.48107 1.63780 1.17447 1.05572 1.21758 1.00476 0.97860 0.86403 1.22600 0.98726 0.78840 1.03020 1.21100 0.93688 0.84811 0.98810 1.43998 1.74274 1.10435 1.03519 1.20816 0.96981 0.96235 0.84120 1.19276 1.19355 1.11737 0.87514 0.91128 1.24964 0.96346 1.00858 0.97711 1.70083 1.22827 1.31303 1.31407 0.86251 0.76725 0.80938 0.82593 1.21522 1.21804 1.20437 1.20364 0.94767 0.94914 1.06684 0.91443 0.90394 0.91431 0.92092 0.92115 0.85802 0.85866 0.85742 0.89762 0.89767 0.88980 0.89118 0.92992 0.90948 0.91462 0.91573 0.89711 0.93532 0.94732 0.95282 0.93740 0.98480 0.93841 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.06 0.35 5.46 37.16 0.20 0.55 16 3 O -0.32 -3.13 10.14 -19.42 -0.20 -3.33 16 4 C 0.13 1.33 6.69 -39.21 -0.26 1.07 16 5 C -0.22 -1.87 9.04 -39.43 -0.36 -2.23 16 6 C -0.08 -0.66 10.04 -39.61 -0.40 -1.05 16 7 C -0.15 -1.42 9.70 -39.56 -0.38 -1.81 16 8 C -0.04 -0.38 5.13 -104.65 -0.54 -0.92 16 9 C -0.07 -0.77 4.63 -27.88 -0.13 -0.90 16 10 C -0.13 -1.46 4.23 -27.88 -0.12 -1.58 16 11 C 0.50 8.10 7.67 -10.98 -0.08 8.01 16 12 O -0.53 -11.07 15.56 5.56 0.09 -10.98 16 13 N -0.61 -9.59 2.87 -181.58 -0.52 -10.12 16 14 C 0.08 0.84 10.24 59.85 0.61 1.46 16 15 C 0.09 1.83 5.73 -4.04 -0.02 1.81 16 16 C 0.14 3.14 6.03 -4.04 -0.02 3.11 16 17 N -0.60 -15.66 2.93 -181.11 -0.53 -16.19 16 18 C 0.16 4.08 9.02 59.85 0.54 4.62 16 19 C -0.25 -7.20 9.68 -15.06 -0.15 -7.34 16 20 H 0.07 2.06 7.86 -52.48 -0.41 1.65 16 21 C 0.00 -0.03 5.06 -17.43 -0.09 -0.12 16 22 N -0.91 -27.16 10.67 55.49 0.59 -26.57 16 23 Si 0.90 22.86 29.58 -169.99 -5.03 17.84 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 27 C -0.15 -1.58 9.64 -39.44 -0.38 -1.96 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.23 8.14 -51.92 -0.42 -0.20 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 32 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 33 H 0.12 0.81 6.30 -52.49 -0.33 0.47 16 34 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 38 H 0.09 0.89 7.40 -51.93 -0.38 0.50 16 39 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.07 0.56 6.44 -51.93 -0.33 0.23 16 43 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 44 H 0.08 2.01 7.42 -51.93 -0.39 1.62 16 45 H 0.05 1.08 8.03 -51.93 -0.42 0.66 16 46 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 47 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 48 H 0.04 1.19 7.21 -51.93 -0.37 0.82 16 49 H 0.00 -0.07 7.83 -51.93 -0.41 -0.48 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 51 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 415.82 15.07 6.27 6.27 Total: -1.00 -34.45 415.82 -9.35 -43.80 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.82 Total: -3.07 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.19 Total: 2.36 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.46 Total: -52.88 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.11 Total: -14.31 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.45 -9.35 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268259129.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.284 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds