Wall clock time and date at job start Tue Mar 31 2020 19:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46571 * 2 1 4 4 C 1.35897 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38760 * 120.05659 * 359.73182 * 4 3 2 6 6 C 1.38118 * 119.94330 * 179.70019 * 5 4 3 7 7 C 1.38281 * 120.05702 * 0.59012 * 6 5 4 8 8 C 1.38243 * 120.11193 * 359.68160 * 7 6 5 9 9 C 1.50702 * 119.97370 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46950 * 270.02208 * 9 8 7 11 11 C 1.50702 * 109.46950 * 179.97438 * 10 9 8 12 12 O 1.21275 * 119.99861 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99700 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00133 * 0.02562 * 13 11 10 15 15 C 1.46498 * 119.99892 * 179.97438 * 13 11 10 16 16 C 1.52998 * 109.47046 * 89.99705 * 15 13 11 17 17 N 1.46505 * 109.47251 * 179.97438 * 16 15 13 18 18 C 1.46500 * 120.00015 * 270.00743 * 17 16 15 19 19 C 1.36935 * 119.99839 * 90.00136 * 17 16 15 20 20 H 1.08003 * 119.99900 * 20.36424 * 19 17 16 21 21 C 1.38814 * 120.00095 * 200.36555 * 19 17 16 22 22 N 1.31615 * 119.99692 * 14.98878 * 21 19 17 23 23 Si 1.86794 * 119.99927 * 194.98912 * 21 19 17 24 24 H 1.48504 * 109.47285 * 85.00239 * 23 21 19 25 25 H 1.48501 * 109.47314 * 205.00250 * 23 21 19 26 26 H 1.48506 * 109.47343 * 325.00020 * 23 21 19 27 27 C 1.38160 * 120.05411 * 0.02562 * 8 7 6 28 28 H 1.08998 * 109.47705 * 60.00586 * 1 2 3 29 29 H 1.09009 * 109.46688 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47295 * 299.99270 * 1 2 3 31 31 H 1.08997 * 109.47192 * 119.99507 * 2 1 3 32 32 H 1.08993 * 109.47487 * 240.00303 * 2 1 3 33 33 H 1.07997 * 120.02523 * 359.96780 * 5 4 3 34 34 H 1.08003 * 119.97072 * 180.29219 * 6 5 4 35 35 H 1.08003 * 119.94321 * 179.70285 * 7 6 5 36 36 H 1.09005 * 109.47054 * 30.01799 * 9 8 7 37 37 H 1.08991 * 109.47520 * 150.02306 * 9 8 7 38 38 H 1.08993 * 109.46862 * 300.00050 * 10 9 8 39 39 H 1.09003 * 109.47211 * 60.00056 * 10 9 8 40 40 H 1.08994 * 109.47539 * 89.99874 * 14 13 11 41 41 H 1.09002 * 109.46585 * 210.00037 * 14 13 11 42 42 H 1.09002 * 109.46907 * 329.99632 * 14 13 11 43 43 H 1.08996 * 109.47171 * 210.00009 * 15 13 11 44 44 H 1.09000 * 109.47258 * 330.00137 * 15 13 11 45 45 H 1.08996 * 109.47384 * 300.00174 * 16 15 13 46 46 H 1.09004 * 109.47098 * 60.00484 * 16 15 13 47 47 H 1.08999 * 109.47375 * 95.09398 * 18 17 16 48 48 H 1.09001 * 109.46335 * 215.09459 * 18 17 16 49 49 H 1.09002 * 109.46972 * 335.08990 * 18 17 16 50 50 H 0.97006 * 119.99868 * 180.02562 * 22 21 19 51 51 H 1.08005 * 120.02885 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3534 1.5255 0.0005 5 6 4.1999 0.4260 0.0067 6 6 5.5688 0.6098 0.0010 7 6 6.0960 1.8881 0.0014 8 6 5.2549 2.9852 0.0010 9 6 5.8328 4.3770 0.0010 10 6 6.0285 4.8481 1.4435 11 6 6.6070 6.2396 1.4435 12 8 6.8403 6.7992 0.3932 13 7 6.8651 6.8621 2.6107 14 6 6.5838 6.1858 3.8794 15 6 7.4280 8.2146 2.6107 16 6 6.2922 9.2397 2.6095 17 7 6.8551 10.5923 2.6101 18 6 7.1353 11.2685 3.8791 19 6 7.1194 11.2244 1.4245 20 1 6.6318 10.8976 0.5179 21 6 8.0140 12.2852 1.3878 22 7 8.8235 12.4987 2.4034 23 14 8.0689 13.4095 -0.1029 24 1 7.0382 14.4693 0.0381 25 1 9.4120 14.0353 -0.2017 26 1 7.8002 12.6178 -1.3302 27 6 3.8849 2.8068 0.0006 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 3.7886 -0.5726 0.0116 34 1 6.2280 -0.2457 0.0010 35 1 7.1667 2.0297 0.0018 36 1 6.7941 4.3713 -0.5129 37 1 5.1503 5.0539 -0.5128 38 1 5.0673 4.8538 1.9573 39 1 6.7111 4.1712 1.9573 40 1 7.4630 5.6239 4.1945 41 1 6.3349 6.9270 4.6389 42 1 5.7439 5.5033 3.7489 43 1 8.0413 8.3529 3.5010 44 1 8.0426 8.3524 1.7211 45 1 5.6789 9.1014 1.7191 46 1 5.6776 9.1020 3.4991 47 1 8.1802 11.1159 4.1492 48 1 6.9395 12.3355 3.7731 49 1 6.4946 10.8572 4.6592 50 1 9.4484 13.2402 2.3779 51 1 3.2281 3.6642 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268259129.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:51 Heat of formation + Delta-G solvation = -51.113223 kcal Electronic energy + Delta-G solvation = -28020.334897 eV Core-core repulsion = 24112.923733 eV Total energy + Delta-G solvation = -3907.411164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23717 -40.80973 -38.77606 -37.83567 -36.37048 -34.82278 -33.45936 -32.87349 -31.28445 -30.45784 -29.73118 -27.94011 -27.47421 -26.32002 -24.83673 -23.92443 -23.44833 -22.36460 -21.49767 -19.96860 -18.89819 -18.81418 -17.83319 -17.29881 -17.07141 -17.01481 -16.95792 -16.81086 -16.42846 -15.61064 -15.38544 -15.18256 -14.74407 -14.64746 -14.34236 -14.30724 -14.09939 -13.90489 -13.83096 -13.62530 -13.46835 -13.34535 -13.14103 -13.03519 -12.79663 -12.76776 -12.57972 -12.49963 -12.42329 -12.41610 -12.07854 -12.02830 -11.95945 -11.64327 -11.60990 -11.58929 -10.79525 -10.69226 -9.76840 -9.72742 -9.12984 -8.80416 -7.87389 -5.32658 0.34788 0.51122 1.42922 1.43846 1.53040 1.70443 2.08462 2.28030 2.50092 2.80853 3.25993 3.52263 3.76850 3.88012 3.93432 4.05558 4.06781 4.08998 4.15165 4.21654 4.31566 4.36654 4.38898 4.46161 4.47410 4.49475 4.60426 4.61738 4.66949 4.78083 4.82787 4.86034 4.94601 4.95945 4.98120 5.00513 5.09436 5.17501 5.19849 5.22909 5.32015 5.38358 5.51582 5.55579 5.64398 5.70294 5.70790 5.86309 6.29074 6.50411 6.51961 7.12405 7.27585 7.83514 8.23717 9.15854 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.001896 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.158464 B =14761.433383 C =14907.923275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.338 6.338 4 C 0.118 3.882 5 C -0.215 4.215 6 C -0.077 4.077 7 C -0.160 4.160 8 C -0.042 4.042 9 C -0.063 4.063 10 C -0.115 4.115 11 C 0.497 3.503 12 O -0.592 6.592 13 N -0.614 5.614 14 C 0.071 3.929 15 C 0.111 3.889 16 C 0.149 3.851 17 N -0.617 5.617 18 C 0.177 3.823 19 C -0.263 4.263 20 H 0.057 0.943 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.278 1.278 27 C -0.167 4.167 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.024 0.976 46 H 0.067 0.933 47 H 0.008 0.992 48 H 0.017 0.983 49 H 0.037 0.963 50 H 0.250 0.750 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -31.900 1.981 34.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.253 6.253 4 C 0.073 3.927 5 C -0.233 4.233 6 C -0.094 4.094 7 C -0.178 4.178 8 C -0.042 4.042 9 C -0.101 4.101 10 C -0.155 4.155 11 C 0.287 3.713 12 O -0.472 6.472 13 N -0.347 5.347 14 C -0.070 4.070 15 C -0.015 4.015 16 C 0.022 3.978 17 N -0.340 5.340 18 C 0.032 3.968 19 C -0.394 4.394 20 H 0.075 0.925 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.207 1.207 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.185 4.185 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.026 0.974 48 H 0.036 0.964 49 H 0.056 0.944 50 H 0.059 0.941 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.148 -31.339 1.503 33.644 hybrid contribution 0.492 1.040 -0.888 1.453 sum -11.656 -30.298 0.616 32.469 Atomic orbital electron populations 1.21819 0.91852 1.04146 1.03027 1.23046 0.96667 0.80752 1.02346 1.86065 1.19103 1.31398 1.88688 1.19117 0.82685 0.94356 0.96569 1.21494 0.94568 0.98427 1.08861 1.21249 0.94536 0.97697 0.95955 1.21215 1.00481 0.92041 1.04045 1.19591 0.92244 0.95143 0.97253 1.20261 1.01587 0.92137 0.96066 1.21637 1.03803 0.91206 0.98807 1.21513 0.77681 0.89226 0.82856 1.90719 1.54560 1.68962 1.33000 1.48132 1.63056 1.15894 1.07653 1.22109 1.02675 0.98373 0.83867 1.21965 0.97344 0.81217 1.00968 1.21132 0.94041 0.83481 0.99169 1.44193 1.74409 1.12363 1.03075 1.20603 0.96601 0.94896 0.84672 1.19405 1.19281 1.12422 0.88249 0.92514 1.25675 0.96243 1.02118 1.00503 1.70218 1.23270 1.31622 1.32906 0.85307 0.76763 0.79073 0.79472 1.20675 1.21509 1.20383 1.20408 0.94968 0.95313 1.07860 0.92186 0.88089 0.91988 0.90829 0.91131 0.83560 0.83126 0.84571 0.90883 0.91847 0.86739 0.86183 0.90942 0.90320 0.88403 0.90814 0.94504 0.95710 0.91504 0.97364 0.96422 0.94410 0.94087 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.98 0.74 -0.51 16 2 C 0.05 0.50 5.46 71.98 0.39 0.90 16 3 O -0.34 -6.38 10.14 -92.40 -0.94 -7.32 16 4 C 0.12 2.27 6.69 22.51 0.15 2.42 16 5 C -0.21 -3.18 9.04 22.37 0.20 -2.97 16 6 C -0.08 -1.05 10.04 22.25 0.22 -0.83 16 7 C -0.16 -2.62 9.70 22.28 0.22 -2.41 16 8 C -0.04 -0.83 5.13 -19.88 -0.10 -0.93 16 9 C -0.06 -1.43 4.63 29.85 0.14 -1.29 16 10 C -0.12 -2.36 4.23 29.85 0.13 -2.24 16 11 C 0.50 15.91 7.67 87.66 0.67 16.58 16 12 O -0.59 -25.78 15.56 -3.01 -0.05 -25.83 16 13 N -0.61 -18.53 2.87 -846.77 -2.43 -20.96 16 14 C 0.07 1.28 10.24 127.77 1.31 2.59 16 15 C 0.11 4.45 5.73 86.38 0.50 4.94 16 16 C 0.15 6.50 6.03 86.38 0.52 7.02 16 17 N -0.62 -32.71 2.93 -726.92 -2.13 -34.83 16 18 C 0.18 8.84 9.02 127.77 1.15 9.99 16 19 C -0.26 -15.65 9.68 84.03 0.81 -14.83 16 20 H 0.06 3.45 7.86 -2.91 -0.02 3.43 16 21 C -0.05 -2.96 5.06 84.86 0.43 -2.54 16 22 N -0.93 -56.78 10.67 21.65 0.23 -56.55 16 23 Si 0.97 47.95 29.58 68.60 2.03 49.98 16 24 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 27 C -0.17 -3.49 9.64 22.36 0.22 -3.28 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 32 H 0.07 0.61 7.68 -2.39 -0.02 0.59 16 33 H 0.15 1.42 6.30 -2.91 -0.02 1.40 16 34 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.07 1.80 8.04 -2.38 -0.02 1.78 16 37 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 38 H 0.11 1.89 7.40 -2.39 -0.02 1.87 16 39 H 0.12 1.82 8.11 -2.39 -0.02 1.80 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.36 8.07 -2.39 -0.02 1.34 16 42 H 0.10 1.20 6.44 -2.39 -0.02 1.19 16 43 H 0.07 2.83 8.07 -2.39 -0.02 2.81 16 44 H 0.04 1.83 7.42 -2.39 -0.02 1.81 16 45 H 0.02 1.17 8.03 -2.39 -0.02 1.15 16 46 H 0.07 2.47 7.86 -2.39 -0.02 2.45 16 47 H 0.01 0.44 7.40 -2.39 -0.02 0.42 16 48 H 0.02 0.94 7.21 -2.39 -0.02 0.92 16 49 H 0.04 1.55 7.83 -2.39 -0.02 1.53 16 50 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 51 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -78.57 415.82 5.30 -73.27 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.89 Total: 9.61 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 7.70 Total: 12.63 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -4.33 Total: -112.35 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.98 Total: -33.15 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -78.57 5.30 -73.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268259129.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.157 kcal (2) G-P(sol) polarization free energy of solvation -78.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds