Wall clock time and date at job start Tue Mar 31 2020 18:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46848 * 2 1 4 4 C 1.46499 * 120.00039 * 276.60300 * 3 2 1 5 5 C 1.53007 * 109.46980 * 270.00409 * 4 3 2 6 6 N 1.46507 * 109.46393 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99160 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00365 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99766 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99628 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47344 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47296 * 119.99859 * 11 9 7 14 14 H 1.48499 * 109.46702 * 239.99139 * 11 9 7 15 15 C 1.34771 * 119.99946 * 96.60926 * 3 2 1 16 16 O 1.21280 * 120.00190 * 185.42346 * 15 3 2 17 17 C 1.50707 * 120.00033 * 5.69566 * 15 3 2 18 18 C 1.52997 * 109.46973 * 178.81257 * 17 15 3 19 19 C 1.52995 * 109.47227 * 298.81807 * 17 15 3 20 20 C 1.50702 * 109.46695 * 58.81338 * 17 15 3 21 21 C 1.38262 * 119.94783 * 7.53534 * 20 17 15 22 22 C 1.38146 * 120.05674 * 179.72273 * 21 20 17 23 23 C 1.38734 * 119.94360 * 0.56692 * 22 21 20 24 24 O 1.35891 * 120.05512 * 179.68274 * 23 22 21 25 25 C 1.42902 * 117.00340 * 0.02562 * 24 23 22 26 26 C 1.38733 * 119.88410 * 359.70038 * 23 22 21 27 27 C 1.38144 * 119.95044 * 0.02562 * 26 23 22 28 28 H 1.08995 * 109.46953 * 186.92864 * 1 2 3 29 29 H 1.08990 * 109.47333 * 306.93286 * 1 2 3 30 30 H 1.08999 * 109.47183 * 66.93236 * 1 2 3 31 31 H 1.09002 * 109.47039 * 239.99945 * 2 1 3 32 32 H 1.09001 * 109.46611 * 120.00428 * 2 1 3 33 33 H 1.09001 * 109.47033 * 30.00059 * 4 3 2 34 34 H 1.09003 * 109.47316 * 150.00489 * 4 3 2 35 35 H 1.09001 * 109.46952 * 299.99699 * 5 4 3 36 36 H 1.08991 * 109.47124 * 60.00321 * 5 4 3 37 37 H 0.96989 * 120.00792 * 359.97438 * 6 5 4 38 38 H 0.97006 * 119.99893 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47075 * 55.13177 * 18 17 15 40 40 H 1.09008 * 109.46628 * 175.12393 * 18 17 15 41 41 H 1.08994 * 109.47548 * 295.12694 * 18 17 15 42 42 H 1.09004 * 109.47410 * 70.52989 * 19 17 15 43 43 H 1.08997 * 109.47375 * 190.53421 * 19 17 15 44 44 H 1.09005 * 109.47134 * 310.53201 * 19 17 15 45 45 H 1.08003 * 119.96944 * 359.96692 * 21 20 17 46 46 H 1.07999 * 120.02961 * 180.24039 * 22 21 20 47 47 H 1.09000 * 109.47216 * 179.97438 * 25 24 23 48 48 H 1.08994 * 109.46918 * 300.00216 * 25 24 23 49 49 H 1.09004 * 109.47085 * 60.00153 * 25 24 23 50 50 H 1.08005 * 120.02290 * 179.97438 * 26 23 22 51 51 H 1.07992 * 119.97610 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1249 2.1205 -1.2603 5 6 3.5131 1.9001 -1.8650 6 7 3.6197 2.6400 -3.1250 7 6 4.7801 2.5924 -3.8506 8 1 5.6167 2.0099 -3.4938 9 6 4.8815 3.2938 -5.0443 10 7 3.8621 4.0040 -5.4787 11 14 6.4641 3.2283 -6.0345 12 1 7.4504 2.3664 -5.3350 13 1 6.1830 2.6678 -7.3806 14 1 7.0170 4.5994 -6.1749 15 6 2.3696 1.9718 1.1594 16 8 2.6797 3.1442 1.1732 17 6 2.3829 1.1738 2.4378 18 6 2.8426 2.0670 3.5918 19 6 0.9745 0.6509 2.7273 20 6 3.3307 0.0110 2.2941 21 6 4.1352 -0.0894 1.1742 22 6 5.0090 -1.1514 1.0428 23 6 5.0704 -2.1238 2.0304 24 8 5.9245 -3.1727 1.9005 25 6 6.7306 -3.2109 0.7212 26 6 4.2581 -2.0236 3.1506 27 6 3.3901 -0.9568 3.2799 28 1 -0.3633 -1.0201 0.1240 29 1 -0.3633 0.6174 0.8214 30 1 -0.3633 0.4027 -0.9455 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3650 1.7643 -1.9558 34 1 1.9753 3.1836 -1.0718 35 1 4.2730 2.2563 -1.1694 36 1 3.6626 0.8371 -2.0536 37 1 2.8684 3.1628 -3.4456 38 1 3.9328 4.4939 -6.3131 39 1 2.2086 2.9523 3.6408 40 1 2.7697 1.5156 4.5292 41 1 3.8768 2.3693 3.4275 42 1 0.7203 -0.1265 2.0067 43 1 0.9405 0.2373 3.7351 44 1 0.2592 1.4694 2.6461 45 1 4.0833 0.6651 0.4032 46 1 5.6400 -1.2273 0.1697 47 1 7.3654 -4.0967 0.7435 48 1 6.0871 -3.2466 -0.1578 49 1 7.3546 -2.3182 0.6786 50 1 4.3038 -2.7796 3.9206 51 1 2.7573 -0.8786 4.1515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273764876.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:05 Heat of formation + Delta-G solvation = -19.290867 kcal Electronic energy + Delta-G solvation = -30536.756662 eV Core-core repulsion = 26630.725419 eV Total energy + Delta-G solvation = -3906.031243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.33679 -39.83875 -37.75137 -36.32046 -35.16035 -34.27291 -31.72657 -31.33426 -30.43327 -29.41291 -27.93321 -27.42711 -27.14198 -24.42787 -23.53449 -22.95390 -22.82359 -21.64671 -20.67077 -18.62465 -18.35833 -17.26543 -17.08496 -16.45311 -16.21164 -15.89858 -15.30351 -15.14980 -14.74598 -14.34889 -14.24502 -13.94905 -13.86366 -13.46721 -13.42056 -13.33028 -13.15992 -12.92195 -12.88971 -12.62181 -12.52387 -12.47120 -12.19504 -12.05090 -11.62790 -11.41642 -11.28265 -11.07839 -11.00735 -10.98270 -10.91883 -10.90376 -10.76483 -10.67102 -10.08609 -9.78139 -9.48501 -9.12807 -8.88564 -8.45686 -8.20513 -6.93883 -5.76777 -3.06006 1.18783 1.23206 2.73289 3.08849 3.09134 3.43013 3.48399 3.50767 3.56790 4.30534 4.45222 4.60455 4.70020 4.74041 4.87883 4.88992 4.97959 4.99046 5.00128 5.15017 5.19864 5.26526 5.32748 5.35609 5.42792 5.45361 5.50967 5.56091 5.64446 5.67307 5.72145 5.75528 5.77710 5.83938 5.88389 5.89779 6.03644 6.10493 6.16470 6.17858 6.21689 6.28468 6.44162 6.55580 6.59820 6.73127 6.89799 7.20308 7.55047 7.69301 8.32179 8.41704 9.52648 10.08881 10.43989 11.46165 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.003802 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.991299 B = 7362.971362 C = 9165.229794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 N -0.604 5.604 4 C 0.105 3.895 5 C 0.143 3.857 6 N -0.729 5.729 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.932 5.932 11 Si 0.907 3.093 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.523 3.477 16 O -0.529 6.529 17 C -0.036 4.036 18 C -0.123 4.123 19 C -0.158 4.158 20 C -0.113 4.113 21 C -0.075 4.075 22 C -0.199 4.199 23 C 0.126 3.874 24 O -0.320 6.320 25 C 0.026 3.974 26 C -0.153 4.153 27 C -0.071 4.071 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.020 0.980 36 H 0.017 0.983 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.137 0.863 46 H 0.131 0.869 47 H 0.099 0.901 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.130 0.870 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 -15.493 19.773 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.036 4.036 3 N -0.337 5.337 4 C -0.018 4.018 5 C 0.014 3.986 6 N -0.374 5.374 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.581 5.581 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 C 0.310 3.690 16 O -0.404 6.404 17 C -0.039 4.039 18 C -0.181 4.181 19 C -0.215 4.215 20 C -0.113 4.113 21 C -0.093 4.093 22 C -0.218 4.218 23 C 0.081 3.919 24 O -0.233 6.233 25 C -0.070 4.070 26 C -0.171 4.171 27 C -0.089 4.089 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.154 0.846 46 H 0.148 0.852 47 H 0.117 0.883 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.148 0.852 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.460 -15.059 19.839 25.303 hybrid contribution 0.764 0.241 -1.183 1.429 sum -3.696 -14.817 18.657 24.110 Atomic orbital electron populations 1.22429 0.96014 1.02219 1.03034 1.22050 0.94361 0.82970 1.04194 1.47926 1.64801 1.14144 1.06834 1.21711 0.98767 0.97807 0.83496 1.20921 0.93608 0.95123 0.88899 1.42208 1.16163 1.57924 1.21102 1.19229 0.92021 1.24489 1.01156 0.91234 1.24741 0.97773 1.00064 0.98315 1.69672 1.30071 1.35399 1.22924 0.86112 0.82792 0.77268 0.79988 1.20603 1.21826 1.21784 1.20367 0.76529 0.87391 0.84681 1.90726 1.47451 1.16167 1.86075 1.19679 0.95945 0.93695 0.94556 1.21679 1.02531 0.98767 0.95110 1.22478 0.93768 1.02132 1.03135 1.19388 0.99586 0.96482 0.95874 1.21360 0.93282 0.97403 0.97224 1.21290 1.03483 0.96628 1.00408 1.19082 0.90899 0.87288 0.94676 1.86037 1.51160 1.43232 1.42891 1.23087 0.94230 1.03275 0.86358 1.20340 0.98532 1.00641 0.97617 1.20686 0.97492 0.92622 0.98113 0.91579 0.91601 0.92091 0.90389 0.88559 0.90505 0.89610 0.96212 0.96480 0.78219 0.93520 0.91465 0.92005 0.91836 0.89834 0.91450 0.91750 0.84550 0.85163 0.88272 0.92341 0.92430 0.85230 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.95 37.16 0.33 -1.32 16 2 C 0.09 0.97 4.33 -4.04 -0.02 0.95 16 3 N -0.60 -8.63 1.47 -173.68 -0.26 -8.89 16 4 C 0.10 1.82 5.58 -4.04 -0.02 1.80 16 5 C 0.14 3.01 5.73 -4.03 -0.02 2.99 16 6 N -0.73 -19.03 5.60 -59.90 -0.34 -19.37 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 11 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 C 0.52 7.99 5.14 -10.98 -0.06 7.93 16 16 O -0.53 -10.32 15.47 5.56 0.09 -10.24 16 17 C -0.04 -0.41 0.59 -156.81 -0.09 -0.50 16 18 C -0.12 -1.37 7.65 37.16 0.28 -1.09 16 19 C -0.16 -1.36 6.51 37.16 0.24 -1.12 16 20 C -0.11 -1.26 3.04 -104.60 -0.32 -1.58 16 21 C -0.07 -0.97 7.26 -39.61 -0.29 -1.26 16 22 C -0.20 -2.41 9.04 -39.43 -0.36 -2.77 16 23 C 0.13 1.42 6.69 -39.22 -0.26 1.16 16 24 O -0.32 -3.47 10.50 -19.40 -0.20 -3.67 16 25 C 0.03 0.21 9.81 101.05 0.99 1.20 16 26 C -0.15 -1.51 9.99 -39.43 -0.39 -1.90 16 27 C -0.07 -0.66 8.93 -39.60 -0.35 -1.01 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.59 5.86 -51.93 -0.30 0.29 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 32 H 0.10 0.99 3.14 -51.93 -0.16 0.82 16 33 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 34 H 0.09 1.67 7.35 -51.93 -0.38 1.29 16 35 H 0.02 0.46 7.79 -51.93 -0.40 0.05 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 39 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16 40 H 0.06 0.52 8.01 -51.92 -0.42 0.10 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.67 3.53 -51.93 -0.18 0.49 16 43 H 0.07 0.44 7.36 -51.93 -0.38 0.06 16 44 H 0.06 0.58 7.75 -51.93 -0.40 0.17 16 45 H 0.14 2.09 4.46 -52.48 -0.23 1.86 16 46 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 49 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 50 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 51 H 0.13 0.88 7.32 -52.49 -0.38 0.50 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -34.00 392.62 -7.70 -41.71 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.03 Total: 8.64 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.58 Total: -3.94 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.13 Total: -56.08 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.12 Total: -13.91 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.00 -7.70 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273764876.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.418 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds