Wall clock time and date at job start Tue Mar 31 2020 18:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46848 * 2 1 4 4 C 1.46499 * 120.00039 * 276.60300 * 3 2 1 5 5 C 1.53007 * 109.46980 * 270.00409 * 4 3 2 6 6 N 1.46507 * 109.46393 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99160 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00365 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99766 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99628 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47344 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47296 * 119.99859 * 11 9 7 14 14 H 1.48499 * 109.46702 * 239.99139 * 11 9 7 15 15 C 1.34771 * 119.99946 * 96.60926 * 3 2 1 16 16 O 1.21280 * 120.00190 * 185.42346 * 15 3 2 17 17 C 1.50707 * 120.00033 * 5.69566 * 15 3 2 18 18 C 1.52997 * 109.46973 * 178.81257 * 17 15 3 19 19 C 1.52995 * 109.47227 * 298.81807 * 17 15 3 20 20 C 1.50702 * 109.46695 * 58.81338 * 17 15 3 21 21 C 1.38262 * 119.94783 * 7.53534 * 20 17 15 22 22 C 1.38146 * 120.05674 * 179.72273 * 21 20 17 23 23 C 1.38734 * 119.94360 * 0.56692 * 22 21 20 24 24 O 1.35891 * 120.05512 * 179.68274 * 23 22 21 25 25 C 1.42902 * 117.00340 * 0.02562 * 24 23 22 26 26 C 1.38733 * 119.88410 * 359.70038 * 23 22 21 27 27 C 1.38144 * 119.95044 * 0.02562 * 26 23 22 28 28 H 1.08995 * 109.46953 * 186.92864 * 1 2 3 29 29 H 1.08990 * 109.47333 * 306.93286 * 1 2 3 30 30 H 1.08999 * 109.47183 * 66.93236 * 1 2 3 31 31 H 1.09002 * 109.47039 * 239.99945 * 2 1 3 32 32 H 1.09001 * 109.46611 * 120.00428 * 2 1 3 33 33 H 1.09001 * 109.47033 * 30.00059 * 4 3 2 34 34 H 1.09003 * 109.47316 * 150.00489 * 4 3 2 35 35 H 1.09001 * 109.46952 * 299.99699 * 5 4 3 36 36 H 1.08991 * 109.47124 * 60.00321 * 5 4 3 37 37 H 0.96989 * 120.00792 * 359.97438 * 6 5 4 38 38 H 0.97006 * 119.99893 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47075 * 55.13177 * 18 17 15 40 40 H 1.09008 * 109.46628 * 175.12393 * 18 17 15 41 41 H 1.08994 * 109.47548 * 295.12694 * 18 17 15 42 42 H 1.09004 * 109.47410 * 70.52989 * 19 17 15 43 43 H 1.08997 * 109.47375 * 190.53421 * 19 17 15 44 44 H 1.09005 * 109.47134 * 310.53201 * 19 17 15 45 45 H 1.08003 * 119.96944 * 359.96692 * 21 20 17 46 46 H 1.07999 * 120.02961 * 180.24039 * 22 21 20 47 47 H 1.09000 * 109.47216 * 179.97438 * 25 24 23 48 48 H 1.08994 * 109.46918 * 300.00216 * 25 24 23 49 49 H 1.09004 * 109.47085 * 60.00153 * 25 24 23 50 50 H 1.08005 * 120.02290 * 179.97438 * 26 23 22 51 51 H 1.07992 * 119.97610 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1249 2.1205 -1.2603 5 6 3.5131 1.9001 -1.8650 6 7 3.6197 2.6400 -3.1250 7 6 4.7801 2.5924 -3.8506 8 1 5.6167 2.0099 -3.4938 9 6 4.8815 3.2938 -5.0443 10 7 3.8621 4.0040 -5.4787 11 14 6.4641 3.2283 -6.0345 12 1 7.4504 2.3664 -5.3350 13 1 6.1830 2.6678 -7.3806 14 1 7.0170 4.5994 -6.1749 15 6 2.3696 1.9718 1.1594 16 8 2.6797 3.1442 1.1732 17 6 2.3829 1.1738 2.4378 18 6 2.8426 2.0670 3.5918 19 6 0.9745 0.6509 2.7273 20 6 3.3307 0.0110 2.2941 21 6 4.1352 -0.0894 1.1742 22 6 5.0090 -1.1514 1.0428 23 6 5.0704 -2.1238 2.0304 24 8 5.9245 -3.1727 1.9005 25 6 6.7306 -3.2109 0.7212 26 6 4.2581 -2.0236 3.1506 27 6 3.3901 -0.9568 3.2799 28 1 -0.3633 -1.0201 0.1240 29 1 -0.3633 0.6174 0.8214 30 1 -0.3633 0.4027 -0.9455 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3650 1.7643 -1.9558 34 1 1.9753 3.1836 -1.0718 35 1 4.2730 2.2563 -1.1694 36 1 3.6626 0.8371 -2.0536 37 1 2.8684 3.1628 -3.4456 38 1 3.9328 4.4939 -6.3131 39 1 2.2086 2.9523 3.6408 40 1 2.7697 1.5156 4.5292 41 1 3.8768 2.3693 3.4275 42 1 0.7203 -0.1265 2.0067 43 1 0.9405 0.2373 3.7351 44 1 0.2592 1.4694 2.6461 45 1 4.0833 0.6651 0.4032 46 1 5.6400 -1.2273 0.1697 47 1 7.3654 -4.0967 0.7435 48 1 6.0871 -3.2466 -0.1578 49 1 7.3546 -2.3182 0.6786 50 1 4.3038 -2.7796 3.9206 51 1 2.7573 -0.8786 4.1515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273764876.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:04 Heat of formation + Delta-G solvation = -40.170079 kcal Electronic energy + Delta-G solvation = -30537.662053 eV Core-core repulsion = 26630.725419 eV Total energy + Delta-G solvation = -3906.936634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.35335 -40.74109 -38.70197 -37.70465 -36.53635 -35.66369 -33.53944 -32.17085 -31.75361 -30.22677 -29.48900 -28.16624 -28.02409 -26.08403 -24.64778 -24.21845 -23.71923 -23.05821 -21.76962 -19.81633 -19.25195 -19.10316 -18.20584 -17.54999 -17.31702 -16.68443 -16.63008 -16.26725 -16.06875 -15.67616 -15.42592 -15.31392 -15.11724 -14.78327 -14.64397 -14.40795 -14.33333 -14.19186 -13.78679 -13.56189 -13.37347 -13.33013 -13.10296 -12.96422 -12.92625 -12.81908 -12.76234 -12.52832 -12.32037 -12.21001 -12.13343 -11.92914 -11.87754 -11.79922 -11.78369 -11.58545 -11.03750 -10.71969 -9.96427 -9.72350 -9.11744 -9.04621 -8.01639 -5.32929 0.36289 0.36709 1.42669 1.44965 1.53652 1.55174 1.91080 2.36759 2.51989 2.72667 3.30641 3.33220 3.58526 3.82864 3.89798 3.95850 4.02107 4.06602 4.12802 4.15903 4.19423 4.28374 4.34759 4.38899 4.41925 4.49009 4.53326 4.55062 4.67225 4.72782 4.74793 4.80521 4.84329 4.87718 4.95815 4.99290 5.00184 5.04730 5.06731 5.18127 5.28732 5.32857 5.38886 5.41196 5.46167 5.53219 5.59572 5.76811 6.19490 6.38351 6.40637 7.12084 7.25742 7.96181 8.22459 9.21925 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.003802 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.991299 B = 7362.971362 C = 9165.229794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 N -0.598 5.598 4 C 0.119 3.881 5 C 0.154 3.846 6 N -0.742 5.742 7 C -0.251 4.251 8 H 0.072 0.928 9 C -0.070 4.070 10 N -0.967 5.967 11 Si 0.977 3.023 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.292 1.292 15 C 0.516 3.484 16 O -0.583 6.583 17 C -0.028 4.028 18 C -0.122 4.122 19 C -0.156 4.156 20 C -0.115 4.115 21 C -0.095 4.095 22 C -0.211 4.211 23 C 0.118 3.882 24 O -0.328 6.328 25 C 0.020 3.980 26 C -0.148 4.148 27 C -0.056 4.056 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.060 0.940 35 H -0.003 1.003 36 H 0.027 0.973 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.037 0.963 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.154 0.846 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 -18.340 21.983 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.037 4.037 3 N -0.330 5.330 4 C -0.004 4.004 5 C 0.026 3.974 6 N -0.385 5.385 7 C -0.383 4.383 8 H 0.090 0.910 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.805 3.195 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.219 1.219 15 C 0.305 3.695 16 O -0.463 6.463 17 C -0.031 4.031 18 C -0.180 4.180 19 C -0.213 4.213 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.230 4.230 23 C 0.072 3.928 24 O -0.242 6.242 25 C -0.075 4.075 26 C -0.166 4.166 27 C -0.073 4.073 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.015 0.985 36 H 0.045 0.955 37 H 0.208 0.792 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.056 0.944 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.172 0.828 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.995 -17.967 22.075 28.897 hybrid contribution 0.974 1.086 -1.829 2.340 sum -4.021 -16.881 20.245 26.665 Atomic orbital electron populations 1.22409 0.94015 1.04045 1.02714 1.22292 0.95877 0.80817 1.04721 1.47963 1.64404 1.15176 1.05431 1.21319 0.96820 0.97033 0.85275 1.20906 0.95245 0.94587 0.86658 1.42391 1.15348 1.58349 1.22421 1.19592 0.92817 1.24271 1.01581 0.91019 1.25613 1.01223 0.99966 0.99501 1.69826 1.32153 1.36360 1.23330 0.85035 0.78958 0.77162 0.78345 1.19149 1.21275 1.21908 1.21257 0.75025 0.87110 0.86074 1.90693 1.49824 1.18760 1.86997 1.19697 0.98172 0.93241 0.91972 1.21708 1.00651 0.98965 0.96659 1.22524 0.91135 1.02193 1.05410 1.19380 0.99301 0.96906 0.95940 1.21162 0.95103 0.97351 0.97752 1.21258 1.03689 0.97091 1.00975 1.19286 0.91375 0.87136 0.94963 1.86026 1.51277 1.43006 1.43869 1.23272 0.94218 1.04286 0.85689 1.20707 0.97517 1.01105 0.97320 1.21002 0.97097 0.91062 0.98164 0.88760 0.91074 0.93167 0.90941 0.87045 0.89050 0.92156 0.98502 0.95493 0.79236 0.93730 0.92521 0.88214 0.94393 0.89070 0.88014 0.92134 0.87802 0.85784 0.85872 0.92339 0.92793 0.82806 0.81451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 8.95 71.98 0.64 -2.20 16 2 C 0.08 1.79 4.33 86.38 0.37 2.16 16 3 N -0.60 -17.57 1.47 -821.78 -1.21 -18.78 16 4 C 0.12 4.39 5.58 86.38 0.48 4.87 16 5 C 0.15 6.83 5.73 86.38 0.50 7.32 16 6 N -0.74 -40.35 5.60 -343.43 -1.92 -42.27 16 7 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 10 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 11 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 15 C 0.52 16.25 5.14 87.66 0.45 16.70 16 16 O -0.58 -24.29 15.47 -3.03 -0.05 -24.33 16 17 C -0.03 -0.59 0.59 -53.67 -0.03 -0.63 16 18 C -0.12 -2.57 7.65 71.98 0.55 -2.02 16 19 C -0.16 -2.14 6.51 71.98 0.47 -1.67 16 20 C -0.11 -2.36 3.04 -19.85 -0.06 -2.42 16 21 C -0.10 -2.50 7.26 22.25 0.16 -2.34 16 22 C -0.21 -5.12 9.04 22.37 0.20 -4.92 16 23 C 0.12 2.47 6.69 22.51 0.15 2.62 16 24 O -0.33 -6.59 10.50 -92.33 -0.97 -7.56 16 25 C 0.02 0.30 9.81 113.37 1.11 1.42 16 26 C -0.15 -2.40 9.99 22.37 0.22 -2.18 16 27 C -0.06 -0.81 8.93 22.25 0.20 -0.61 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.11 5.86 -2.39 -0.01 1.09 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 32 H 0.11 2.06 3.14 -2.39 -0.01 2.06 16 33 H 0.09 3.06 8.07 -2.39 -0.02 3.04 16 34 H 0.06 2.53 7.35 -2.39 -0.02 2.52 16 35 H 0.00 -0.14 7.79 -2.39 -0.02 -0.16 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.38 21.41 7.67 -92.72 -0.71 20.69 16 38 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 39 H 0.06 1.30 7.95 -2.39 -0.02 1.28 16 40 H 0.10 1.30 8.01 -2.38 -0.02 1.28 16 41 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.11 3.53 -2.38 -0.01 1.10 16 43 H 0.10 0.75 7.36 -2.39 -0.02 0.73 16 44 H 0.06 0.92 7.75 -2.38 -0.02 0.90 16 45 H 0.10 3.40 4.46 -2.91 -0.01 3.39 16 46 H 0.12 3.00 6.30 -2.91 -0.02 2.98 16 47 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 0.88 7.66 -2.39 -0.02 0.87 16 49 H 0.05 0.85 7.66 -2.38 -0.02 0.84 16 50 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 51 H 0.17 1.19 7.32 -2.91 -0.02 1.17 16 Total: -1.00 -77.33 392.62 5.11 -72.22 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.23 Total: 33.27 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 6.73 Total: -1.48 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -2.85 Total: -121.34 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.02 Total: -31.89 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -77.33 5.11 -72.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273764876.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.049 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds