Wall clock time and date at job start Tue Mar 31 2020 19:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47175 * 2 1 4 4 C 1.35902 * 117.00369 * 179.97438 * 3 2 1 5 5 C 1.38733 * 120.05458 * 359.72616 * 4 3 2 6 6 C 1.38143 * 119.94491 * 179.74135 * 5 4 3 7 7 C 1.38270 * 120.05424 * 0.50988 * 6 5 4 8 8 C 1.50700 * 119.94368 * 179.74149 * 7 6 5 9 9 C 1.52992 * 109.47145 * 270.02455 * 8 7 6 10 10 C 1.50705 * 109.47092 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99635 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99916 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47019 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.47352 * 294.99791 * 14 13 12 16 16 C 1.53006 * 109.47010 * 175.00025 * 14 13 12 17 17 N 1.46498 * 109.47534 * 54.99750 * 14 13 12 18 18 C 1.46505 * 119.99848 * 60.00015 * 17 14 13 19 19 C 1.36931 * 120.00516 * 240.00261 * 17 14 13 20 20 H 1.07996 * 119.99904 * 22.81742 * 19 17 14 21 21 C 1.38816 * 120.00275 * 202.82201 * 19 17 14 22 22 N 1.31621 * 119.99614 * 11.58352 * 21 19 17 23 23 Si 1.86795 * 120.00126 * 191.58189 * 21 19 17 24 24 H 1.48501 * 109.47066 * 90.00027 * 23 21 19 25 25 H 1.48498 * 109.47401 * 210.00165 * 23 21 19 26 26 H 1.48500 * 109.47253 * 330.00228 * 23 21 19 27 27 C 1.38260 * 120.10946 * 359.76380 * 7 6 5 28 28 C 1.38141 * 120.05959 * 359.97438 * 27 7 6 29 29 H 1.08999 * 109.47213 * 59.99940 * 1 2 3 30 30 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47118 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47569 * 239.99910 * 2 1 3 33 33 H 1.08999 * 109.47213 * 120.00060 * 2 1 3 34 34 H 1.08007 * 120.02527 * 359.97438 * 5 4 3 35 35 H 1.07993 * 119.97334 * 180.23200 * 6 5 4 36 36 H 1.09006 * 109.46688 * 30.02634 * 8 7 6 37 37 H 1.08998 * 109.46690 * 150.02195 * 8 7 6 38 38 H 1.08999 * 109.47090 * 299.99565 * 9 8 7 39 39 H 1.08998 * 109.47539 * 60.00260 * 9 8 7 40 40 H 0.96998 * 119.99569 * 359.97438 * 12 10 9 41 41 H 1.09006 * 109.46722 * 300.00233 * 13 12 10 42 42 H 1.08998 * 109.46780 * 59.99870 * 13 12 10 43 43 H 1.08998 * 109.46872 * 300.00060 * 16 14 13 44 44 H 1.09003 * 109.46834 * 60.00243 * 16 14 13 45 45 H 1.08998 * 109.46981 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.47138 * 93.85116 * 18 17 14 47 47 H 1.08996 * 109.47299 * 213.85168 * 18 17 14 48 48 H 1.09003 * 109.46839 * 333.85468 * 18 17 14 49 49 H 0.97004 * 119.99385 * 179.97438 * 22 21 19 50 50 H 1.07999 * 119.97031 * 179.97438 * 27 7 6 51 51 H 1.08000 * 120.03444 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6097 0.0019 7 6 6.0962 1.8880 0.0015 8 6 7.5902 2.0854 0.0021 9 6 8.0952 2.1524 1.4447 10 6 9.5892 2.3505 1.4452 11 8 10.1907 2.4298 0.3951 12 7 10.2567 2.4396 2.6127 13 6 11.7091 2.6316 2.6133 14 6 12.2141 2.6988 4.0559 15 1 11.8060 3.5844 4.5429 16 6 13.7423 2.7740 4.0583 17 7 11.7830 1.5007 4.7805 18 6 12.2033 0.1751 4.3197 19 6 10.9871 1.6199 5.8884 20 1 10.3818 2.5036 6.0259 21 6 10.9585 0.6049 6.8349 22 7 11.8531 -0.3596 6.7927 23 14 9.6504 0.6079 8.1684 24 1 8.4581 -0.1395 7.6939 25 1 10.1879 -0.0421 9.3906 26 1 9.2652 2.0076 8.4808 27 6 5.2550 2.9852 0.0010 28 6 3.8851 2.8069 0.0004 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7884 -0.5726 0.0117 35 1 6.2281 -0.2457 0.0030 36 1 8.0672 1.2506 -0.5115 37 1 7.8339 3.0153 -0.5118 38 1 7.6182 2.9872 1.9582 39 1 7.8515 1.2226 1.9586 40 1 9.7754 2.3766 3.4525 41 1 12.1861 1.7966 2.1001 42 1 11.9528 3.5612 2.0989 43 1 14.1504 1.8884 3.5713 44 1 14.0630 3.6655 3.5192 45 1 14.1020 2.8223 5.0860 46 1 13.1071 -0.1244 4.8505 47 1 11.4104 -0.5464 4.5168 48 1 12.4053 0.2097 3.2491 49 1 11.8333 -1.0687 7.4544 50 1 5.6692 3.9826 0.0010 51 1 3.2284 3.6643 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275865572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:13 Heat of formation + Delta-G solvation = -45.838448 kcal Electronic energy + Delta-G solvation = -28188.953271 eV Core-core repulsion = 24281.770838 eV Total energy + Delta-G solvation = -3907.182433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.39262 -39.35029 -38.00083 -36.72279 -33.80540 -33.61559 -32.09604 -31.85818 -31.08109 -29.46183 -28.89115 -26.03925 -25.96803 -24.43298 -23.79219 -22.96357 -22.20309 -20.96067 -19.81854 -19.18622 -18.50255 -16.98984 -16.71101 -16.40316 -16.28187 -15.56187 -15.44301 -15.23560 -14.99518 -14.53990 -14.09742 -13.83576 -13.73002 -13.64746 -13.47916 -13.07218 -12.89038 -12.80541 -12.65523 -12.51785 -12.23821 -12.04090 -11.89643 -11.78462 -11.45140 -11.40116 -11.13495 -11.05682 -10.91308 -10.84595 -10.79157 -10.75763 -10.41503 -10.28891 -9.91590 -9.79478 -9.45644 -9.16050 -8.61085 -8.47195 -8.22189 -6.82009 -5.77480 -3.24844 1.18254 1.25500 2.92434 3.05758 3.33222 3.39740 3.41385 3.53159 3.78769 4.42989 4.51736 4.54022 4.67616 4.73685 4.78919 4.86652 5.05781 5.12788 5.15149 5.21993 5.35252 5.36664 5.38947 5.39075 5.43202 5.54080 5.61079 5.64003 5.72856 5.80420 5.93666 5.97480 6.10625 6.12457 6.18126 6.20026 6.21175 6.33635 6.43972 6.55856 6.61535 6.76573 6.84998 6.90286 7.07158 7.20011 7.37812 7.69094 7.77008 8.08105 8.34153 8.69730 9.18321 9.81266 10.31062 11.26914 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.002403 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.664504 B =11648.562253 C =13515.471834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.121 3.879 5 C -0.206 4.206 6 C -0.075 4.075 7 C -0.115 4.115 8 C -0.058 4.058 9 C -0.136 4.136 10 C 0.507 3.493 11 O -0.561 6.561 12 N -0.707 5.707 13 C 0.107 3.893 14 C 0.157 3.843 15 H 0.068 0.932 16 C -0.156 4.156 17 N -0.594 5.594 18 C 0.166 3.834 19 C -0.260 4.260 20 H 0.069 0.931 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C -0.076 4.076 28 C -0.151 4.151 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.410 0.590 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.041 0.959 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.042 0.958 48 H -0.003 1.003 49 H 0.252 0.748 50 H 0.130 0.870 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.571 2.902 -13.713 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.076 3.924 5 C -0.225 4.225 6 C -0.093 4.093 7 C -0.115 4.115 8 C -0.096 4.096 9 C -0.176 4.176 10 C 0.293 3.707 11 O -0.441 6.441 12 N -0.357 5.357 13 C -0.019 4.019 14 C 0.048 3.952 15 H 0.086 0.914 16 C -0.216 4.216 17 N -0.317 5.317 18 C 0.022 3.978 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.094 4.094 28 C -0.169 4.169 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.246 0.754 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.063 0.937 50 H 0.147 0.853 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.269 2.931 -14.306 21.862 hybrid contribution -0.735 -0.536 1.366 1.641 sum -17.004 2.395 -12.940 21.501 Atomic orbital electron populations 1.21774 0.92778 1.02862 1.03498 1.22772 0.95826 0.82063 1.01460 1.86052 1.19228 1.29233 1.88812 1.18991 0.82119 0.94240 0.97014 1.21224 0.94364 0.97945 1.08948 1.20907 0.94190 0.97026 0.97161 1.19877 0.95906 0.92992 1.02712 1.20249 0.89712 1.04019 0.95642 1.21647 0.92678 1.04536 0.98707 1.20600 0.89724 0.76455 0.83891 1.90648 1.70330 1.51554 1.31578 1.45942 1.08966 1.72068 1.08751 1.21918 0.80099 1.00211 0.99710 1.20622 0.92959 0.91729 0.89853 0.91426 1.22184 0.97636 1.00057 1.01717 1.43971 1.58037 0.99839 1.29818 1.20716 0.99368 0.86087 0.91674 1.19199 1.17131 1.04690 0.97934 0.91363 1.25043 0.98103 0.98744 0.97555 1.70077 1.34171 1.14158 1.36432 0.86280 0.81276 0.77608 0.81485 1.21518 1.21811 1.20499 1.20899 0.91971 0.98892 0.97668 1.20408 0.95219 0.94721 1.06600 0.91575 0.90372 0.91487 0.92085 0.91965 0.85651 0.85603 0.90350 0.90358 0.89070 0.88815 0.75386 0.92243 0.92633 0.93187 0.94001 0.92258 0.95504 0.93917 0.98430 0.93739 0.85251 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.32 -3.34 10.14 -19.43 -0.20 -3.54 16 4 C 0.12 1.34 6.69 -39.22 -0.26 1.07 16 5 C -0.21 -2.13 9.04 -39.43 -0.36 -2.49 16 6 C -0.07 -0.80 9.69 -39.60 -0.38 -1.19 16 7 C -0.11 -1.26 5.13 -104.60 -0.54 -1.80 16 8 C -0.06 -0.69 4.63 -27.89 -0.13 -0.82 16 9 C -0.14 -1.71 5.68 -27.88 -0.16 -1.87 16 10 C 0.51 8.28 7.83 -10.98 -0.09 8.20 16 11 O -0.56 -10.83 15.98 5.56 0.09 -10.74 16 12 N -0.71 -12.00 5.39 -60.29 -0.32 -12.32 16 13 C 0.11 1.88 4.93 -4.05 -0.02 1.86 16 14 C 0.16 3.00 2.87 -67.93 -0.19 2.81 16 15 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 16 C -0.16 -2.76 9.19 37.16 0.34 -2.42 16 17 N -0.59 -13.68 2.29 -173.49 -0.40 -14.07 16 18 C 0.17 3.96 8.00 59.85 0.48 4.44 16 19 C -0.26 -6.57 9.33 -15.06 -0.14 -6.71 16 20 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 22 N -0.90 -25.45 10.63 55.49 0.59 -24.87 16 23 Si 0.90 20.92 29.57 -169.99 -5.03 15.90 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 28 C -0.15 -1.59 9.99 -39.43 -0.39 -1.99 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 33 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 34 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 37 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.41 7.02 7.89 -40.82 -0.32 6.69 16 41 H 0.06 1.14 6.86 -51.93 -0.36 0.78 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.03 0.70 7.43 -51.93 -0.39 0.31 16 47 H 0.04 1.10 7.20 -51.93 -0.37 0.73 16 48 H 0.00 -0.06 6.53 -51.93 -0.34 -0.40 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 51 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 413.46 15.07 6.23 6.23 Total: -1.00 -30.63 413.46 -9.51 -40.14 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.74 Total: 5.18 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.73 Total: -1.91 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.13 Total: -51.26 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.11 Total: -14.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.63 -9.51 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275865572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.699 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds