Wall clock time and date at job start Tue Mar 31 2020 19:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47175 * 2 1 4 4 C 1.35902 * 117.00369 * 179.97438 * 3 2 1 5 5 C 1.38733 * 120.05458 * 359.72616 * 4 3 2 6 6 C 1.38143 * 119.94491 * 179.74135 * 5 4 3 7 7 C 1.38270 * 120.05424 * 0.50988 * 6 5 4 8 8 C 1.50700 * 119.94368 * 179.74149 * 7 6 5 9 9 C 1.52992 * 109.47145 * 270.02455 * 8 7 6 10 10 C 1.50705 * 109.47092 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99635 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99916 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47019 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.47352 * 294.99791 * 14 13 12 16 16 C 1.53006 * 109.47010 * 175.00025 * 14 13 12 17 17 N 1.46498 * 109.47534 * 54.99750 * 14 13 12 18 18 C 1.46505 * 119.99848 * 60.00015 * 17 14 13 19 19 C 1.36931 * 120.00516 * 240.00261 * 17 14 13 20 20 H 1.07996 * 119.99904 * 22.81742 * 19 17 14 21 21 C 1.38816 * 120.00275 * 202.82201 * 19 17 14 22 22 N 1.31621 * 119.99614 * 11.58352 * 21 19 17 23 23 Si 1.86795 * 120.00126 * 191.58189 * 21 19 17 24 24 H 1.48501 * 109.47066 * 90.00027 * 23 21 19 25 25 H 1.48498 * 109.47401 * 210.00165 * 23 21 19 26 26 H 1.48500 * 109.47253 * 330.00228 * 23 21 19 27 27 C 1.38260 * 120.10946 * 359.76380 * 7 6 5 28 28 C 1.38141 * 120.05959 * 359.97438 * 27 7 6 29 29 H 1.08999 * 109.47213 * 59.99940 * 1 2 3 30 30 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47118 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47569 * 239.99910 * 2 1 3 33 33 H 1.08999 * 109.47213 * 120.00060 * 2 1 3 34 34 H 1.08007 * 120.02527 * 359.97438 * 5 4 3 35 35 H 1.07993 * 119.97334 * 180.23200 * 6 5 4 36 36 H 1.09006 * 109.46688 * 30.02634 * 8 7 6 37 37 H 1.08998 * 109.46690 * 150.02195 * 8 7 6 38 38 H 1.08999 * 109.47090 * 299.99565 * 9 8 7 39 39 H 1.08998 * 109.47539 * 60.00260 * 9 8 7 40 40 H 0.96998 * 119.99569 * 359.97438 * 12 10 9 41 41 H 1.09006 * 109.46722 * 300.00233 * 13 12 10 42 42 H 1.08998 * 109.46780 * 59.99870 * 13 12 10 43 43 H 1.08998 * 109.46872 * 300.00060 * 16 14 13 44 44 H 1.09003 * 109.46834 * 60.00243 * 16 14 13 45 45 H 1.08998 * 109.46981 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.47138 * 93.85116 * 18 17 14 47 47 H 1.08996 * 109.47299 * 213.85168 * 18 17 14 48 48 H 1.09003 * 109.46839 * 333.85468 * 18 17 14 49 49 H 0.97004 * 119.99385 * 179.97438 * 22 21 19 50 50 H 1.07999 * 119.97031 * 179.97438 * 27 7 6 51 51 H 1.08000 * 120.03444 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6097 0.0019 7 6 6.0962 1.8880 0.0015 8 6 7.5902 2.0854 0.0021 9 6 8.0952 2.1524 1.4447 10 6 9.5892 2.3505 1.4452 11 8 10.1907 2.4298 0.3951 12 7 10.2567 2.4396 2.6127 13 6 11.7091 2.6316 2.6133 14 6 12.2141 2.6988 4.0559 15 1 11.8060 3.5844 4.5429 16 6 13.7423 2.7740 4.0583 17 7 11.7830 1.5007 4.7805 18 6 12.2033 0.1751 4.3197 19 6 10.9871 1.6199 5.8884 20 1 10.3818 2.5036 6.0259 21 6 10.9585 0.6049 6.8349 22 7 11.8531 -0.3596 6.7927 23 14 9.6504 0.6079 8.1684 24 1 8.4581 -0.1395 7.6939 25 1 10.1879 -0.0421 9.3906 26 1 9.2652 2.0076 8.4808 27 6 5.2550 2.9852 0.0010 28 6 3.8851 2.8069 0.0004 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7884 -0.5726 0.0117 35 1 6.2281 -0.2457 0.0030 36 1 8.0672 1.2506 -0.5115 37 1 7.8339 3.0153 -0.5118 38 1 7.6182 2.9872 1.9582 39 1 7.8515 1.2226 1.9586 40 1 9.7754 2.3766 3.4525 41 1 12.1861 1.7966 2.1001 42 1 11.9528 3.5612 2.0989 43 1 14.1504 1.8884 3.5713 44 1 14.0630 3.6655 3.5192 45 1 14.1020 2.8223 5.0860 46 1 13.1071 -0.1244 4.8505 47 1 11.4104 -0.5464 4.5168 48 1 12.4053 0.2097 3.2491 49 1 11.8333 -1.0687 7.4544 50 1 5.6692 3.9826 0.0010 51 1 3.2284 3.6643 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275865572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:12 Heat of formation + Delta-G solvation = -62.058828 kcal Electronic energy + Delta-G solvation = -28189.656639 eV Core-core repulsion = 24281.770838 eV Total energy + Delta-G solvation = -3907.885801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.17897 -40.63771 -38.84282 -38.33190 -35.37571 -34.59632 -33.67076 -32.59422 -31.82337 -31.17178 -29.89087 -28.00836 -27.22842 -25.28140 -24.91678 -24.52065 -22.92285 -21.80561 -21.18844 -20.72068 -19.22338 -18.85128 -17.96413 -17.22029 -17.06409 -17.03370 -16.86529 -16.35217 -16.13347 -15.80592 -15.35196 -15.02345 -14.69847 -14.55167 -14.47464 -14.40399 -14.27586 -13.97135 -13.76983 -13.50437 -13.36423 -13.30878 -13.04084 -12.83961 -12.66551 -12.62329 -12.57734 -12.44737 -12.27724 -12.25232 -12.08113 -12.00945 -11.77345 -11.59700 -11.56914 -11.49068 -10.80339 -10.59827 -9.94335 -9.88152 -9.02857 -8.76053 -7.77621 -5.25696 0.40258 0.43840 1.50678 1.52026 1.59534 1.76203 2.27479 2.41665 2.54357 2.81668 3.37793 3.65265 3.78752 3.83143 3.95955 4.04437 4.07779 4.10461 4.13462 4.24643 4.33209 4.36209 4.42316 4.45717 4.50732 4.61786 4.64521 4.71196 4.76847 4.78904 4.91253 4.93121 4.95333 4.97048 5.05646 5.13515 5.19423 5.23036 5.25010 5.34941 5.39058 5.42045 5.44066 5.65063 5.71049 5.73302 5.76242 5.85301 6.37010 6.47171 6.73606 7.19232 7.37573 7.90649 8.36644 9.26086 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.002403 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.664504 B =11648.562253 C =13515.471834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.110 3.890 5 C -0.211 4.211 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.049 4.049 9 C -0.127 4.127 10 C 0.507 3.493 11 O -0.592 6.592 12 N -0.709 5.709 13 C 0.117 3.883 14 C 0.156 3.844 15 H 0.075 0.925 16 C -0.149 4.149 17 N -0.602 5.602 18 C 0.187 3.813 19 C -0.253 4.253 20 H 0.081 0.919 21 C -0.054 4.054 22 N -0.940 5.940 23 Si 0.965 3.035 24 H -0.288 1.288 25 H -0.305 1.305 26 H -0.265 1.265 27 C -0.077 4.077 28 C -0.161 4.161 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.410 0.590 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.040 0.960 46 H -0.001 1.001 47 H 0.015 0.985 48 H 0.016 0.984 49 H 0.244 0.756 50 H 0.146 0.854 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.098 4.085 -14.160 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.065 3.935 5 C -0.230 4.230 6 C -0.102 4.102 7 C -0.123 4.123 8 C -0.087 4.087 9 C -0.167 4.167 10 C 0.295 3.705 11 O -0.474 6.474 12 N -0.359 5.359 13 C -0.009 4.009 14 C 0.049 3.951 15 H 0.093 0.907 16 C -0.208 4.208 17 N -0.325 5.325 18 C 0.042 3.958 19 C -0.383 4.383 20 H 0.099 0.901 21 C -0.249 4.249 22 N -0.587 5.587 23 Si 0.794 3.206 24 H -0.215 1.215 25 H -0.232 1.232 26 H -0.190 1.190 27 C -0.095 4.095 28 C -0.180 4.180 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.247 0.753 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.017 0.983 47 H 0.034 0.966 48 H 0.035 0.965 49 H 0.054 0.946 50 H 0.164 0.836 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.812 4.152 -14.770 23.509 hybrid contribution -0.274 -0.863 1.429 1.692 sum -18.085 3.289 -13.341 22.713 Atomic orbital electron populations 1.21801 0.91489 1.04119 1.03208 1.23030 0.96906 0.80935 1.02089 1.86043 1.18953 1.31083 1.88740 1.19217 0.82584 0.94670 0.97010 1.21414 0.94193 0.98705 1.08640 1.21085 0.94627 0.97311 0.97173 1.19838 0.95347 0.93464 1.03690 1.20126 0.90235 1.03460 0.94911 1.21649 0.89885 1.05538 0.99605 1.21188 0.91074 0.75256 0.83014 1.90635 1.71315 1.52887 1.32525 1.45991 1.08677 1.72189 1.09083 1.21725 0.80599 1.00335 0.98272 1.20789 0.93950 0.90187 0.90181 0.90706 1.22076 0.96312 1.01435 1.01019 1.44113 1.58078 1.00702 1.29636 1.20352 0.97033 0.86188 0.92267 1.19588 1.16601 1.04408 0.97697 0.90094 1.25763 1.00109 0.99010 0.99984 1.70249 1.36159 1.14992 1.37326 0.85297 0.78835 0.77944 0.78526 1.21488 1.23195 1.18997 1.21091 0.91874 0.99502 0.97036 1.20639 0.95591 0.95156 1.06603 0.91701 0.88342 0.91918 0.91220 0.91522 0.84078 0.84877 0.91451 0.90552 0.87038 0.88323 0.75350 0.93802 0.91037 0.93897 0.90532 0.94057 0.98309 0.96590 0.96512 0.94636 0.83626 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.33 -6.64 10.14 -92.45 -0.94 -7.58 16 4 C 0.11 2.30 6.69 22.51 0.15 2.45 16 5 C -0.21 -4.09 9.04 22.37 0.20 -3.89 16 6 C -0.08 -1.70 9.69 22.25 0.22 -1.49 16 7 C -0.12 -2.55 5.13 -19.85 -0.10 -2.65 16 8 C -0.05 -1.11 4.63 29.85 0.14 -0.97 16 9 C -0.13 -2.97 5.68 29.85 0.17 -2.80 16 10 C 0.51 15.80 7.83 87.66 0.69 16.49 16 11 O -0.59 -22.21 15.98 -3.03 -0.05 -22.26 16 12 N -0.71 -22.89 5.39 -463.05 -2.49 -25.39 16 13 C 0.12 3.92 4.93 86.38 0.43 4.35 16 14 C 0.16 5.70 2.87 44.99 0.13 5.83 16 15 H 0.07 2.65 7.86 -2.39 -0.02 2.63 16 16 C -0.15 -5.02 9.19 71.98 0.66 -4.36 16 17 N -0.60 -27.36 2.29 -702.79 -1.61 -28.97 16 18 C 0.19 8.99 8.00 127.77 1.02 10.02 16 19 C -0.25 -12.54 9.33 84.04 0.78 -11.75 16 20 H 0.08 3.76 7.81 -2.91 -0.02 3.74 16 21 C -0.05 -2.84 5.12 84.86 0.43 -2.41 16 22 N -0.94 -54.00 10.63 21.65 0.23 -53.77 16 23 Si 0.96 42.93 29.57 68.60 2.03 44.96 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 C -0.08 -1.47 9.69 22.25 0.22 -1.25 16 28 C -0.16 -3.20 9.99 22.37 0.22 -2.97 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.79 7.68 -2.39 -0.02 0.77 16 33 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 34 H 0.14 2.16 6.30 -2.91 -0.02 2.14 16 35 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.07 1.64 8.04 -2.38 -0.02 1.62 16 37 H 0.08 1.73 8.04 -2.39 -0.02 1.71 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.41 13.29 7.89 -92.71 -0.73 12.56 16 41 H 0.04 1.62 6.86 -2.38 -0.02 1.60 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.49 7.67 -2.39 -0.02 1.47 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.00 -0.07 7.43 -2.39 -0.02 -0.09 16 47 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 48 H 0.02 0.72 6.53 -2.39 -0.02 0.70 16 49 H 0.24 13.85 8.31 -92.70 -0.77 13.08 16 50 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 51 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -65.37 413.46 3.83 -61.54 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.17 Total: 26.58 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.49 Total: 4.89 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.87 Total: -108.13 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.99 Total: -29.84 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.37 3.83 -61.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275865572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.523 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds