Wall clock time and date at job start Tue Mar 31 2020 19:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42892 * 109.47236 * 2 1 4 4 C 1.35901 * 117.00318 * 180.02562 * 3 2 1 5 5 C 1.38734 * 120.04992 * 359.72474 * 4 3 2 6 6 C 1.38155 * 119.93895 * 179.74233 * 5 4 3 7 7 C 1.38262 * 120.05561 * 0.51198 * 6 5 4 8 8 C 1.50698 * 119.94323 * 179.73969 * 7 6 5 9 9 C 1.52994 * 109.47284 * 270.02346 * 8 7 6 10 10 C 1.50705 * 109.47232 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99835 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00350 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00112 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46958 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.46760 * 65.00279 * 14 13 12 16 16 C 1.53006 * 109.46681 * 184.99756 * 14 13 12 17 17 N 1.46493 * 109.47278 * 304.99626 * 14 13 12 18 18 C 1.46497 * 120.00585 * 300.00568 * 17 14 13 19 19 C 1.36941 * 119.99487 * 119.99741 * 17 14 13 20 20 H 1.07991 * 120.00241 * 21.95179 * 19 17 14 21 21 C 1.38813 * 119.99715 * 201.94300 * 19 17 14 22 22 N 1.31619 * 120.00468 * 12.69630 * 21 19 17 23 23 Si 1.86808 * 119.99689 * 192.69081 * 21 19 17 24 24 H 1.48497 * 109.46868 * 60.00577 * 23 21 19 25 25 H 1.48505 * 109.46774 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47139 * 300.00119 * 23 21 19 27 27 C 1.38269 * 120.11165 * 359.76806 * 7 6 5 28 28 C 1.38147 * 120.05754 * 359.97386 * 27 7 6 29 29 H 1.08994 * 109.46846 * 299.99366 * 1 2 3 30 30 H 1.08991 * 109.47344 * 60.00024 * 1 2 3 31 31 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46833 * 239.99980 * 2 1 3 33 33 H 1.08998 * 109.47352 * 120.00666 * 2 1 3 34 34 H 1.08002 * 120.03397 * 359.97438 * 5 4 3 35 35 H 1.07995 * 119.96752 * 180.23039 * 6 5 4 36 36 H 1.08997 * 109.46926 * 30.02815 * 8 7 6 37 37 H 1.09000 * 109.46966 * 150.02062 * 8 7 6 38 38 H 1.08997 * 109.47522 * 300.00105 * 9 8 7 39 39 H 1.09002 * 109.47337 * 60.00496 * 9 8 7 40 40 H 0.97003 * 119.99805 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47462 * 299.99293 * 13 12 10 42 42 H 1.08996 * 109.47364 * 59.99744 * 13 12 10 43 43 H 1.09002 * 109.46501 * 180.02562 * 16 14 13 44 44 H 1.08994 * 109.47539 * 300.00080 * 16 14 13 45 45 H 1.08997 * 109.47097 * 60.00728 * 16 14 13 46 46 H 1.08993 * 109.47228 * 94.30892 * 18 17 14 47 47 H 1.09003 * 109.47276 * 214.31217 * 18 17 14 48 48 H 1.09005 * 109.46581 * 334.30834 * 18 17 14 49 49 H 0.97000 * 120.00485 * 180.02562 * 22 21 19 50 50 H 1.08004 * 119.97140 * 179.97438 * 27 7 6 51 51 H 1.08001 * 120.02708 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1998 0.4259 0.0047 6 6 5.5690 0.6095 -0.0012 7 6 6.0963 1.8877 -0.0017 8 6 7.5902 2.0851 -0.0023 9 6 8.0964 2.1517 1.4400 10 6 9.5904 2.3498 1.4394 11 8 10.1912 2.4293 0.3888 12 7 10.2591 2.4374 2.6063 13 6 11.7114 2.6294 2.6056 14 6 12.2176 2.6961 4.0480 15 1 12.0540 1.7349 4.5352 16 6 13.7129 3.0205 4.0491 17 7 11.4907 3.7412 4.7728 18 6 11.5516 5.1303 4.3118 19 6 10.7539 3.4194 5.8814 20 1 10.9711 2.5151 6.4303 21 6 9.7280 4.2558 6.2997 22 7 9.2964 5.2146 5.5080 23 14 8.9599 4.0203 7.9862 24 1 10.0023 4.1807 9.0315 25 1 7.8935 5.0335 8.1902 26 1 8.3729 2.6593 8.0771 27 6 5.2550 2.9851 -0.0011 28 6 3.8851 2.8068 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.7885 -0.5728 0.0096 35 1 6.2281 -0.2460 -0.0009 36 1 8.0668 1.2506 -0.5165 37 1 7.8336 3.0151 -0.5161 38 1 7.6199 2.9863 1.9542 39 1 7.8531 1.2217 1.9538 40 1 9.7786 2.3734 3.4465 41 1 12.1881 1.7949 2.0912 42 1 11.9548 3.5595 2.0922 43 1 14.0736 3.0676 5.0766 44 1 14.2538 2.2430 3.5098 45 1 13.8765 3.9817 3.5619 46 1 10.6998 5.3358 3.6636 47 1 11.5240 5.8000 5.1714 48 1 12.4767 5.2888 3.7573 49 1 8.5798 5.7993 5.8005 50 1 5.6693 3.9825 -0.0010 51 1 3.2285 3.6642 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275865573.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:16 Heat of formation + Delta-G solvation = -60.714413 kcal Electronic energy + Delta-G solvation = -28407.626131 eV Core-core repulsion = 24499.798628 eV Total energy + Delta-G solvation = -3907.827503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.18410 -40.61625 -38.84468 -38.31959 -35.32430 -34.60186 -33.70127 -32.59206 -31.83420 -31.12278 -29.88786 -27.98436 -27.21390 -25.28677 -24.90307 -24.49924 -22.93003 -21.80869 -21.15945 -20.70277 -19.22845 -18.81464 -17.97835 -17.20085 -17.05834 -17.02750 -16.82654 -16.39070 -16.11411 -15.80985 -15.33648 -14.98998 -14.80569 -14.45027 -14.42315 -14.41200 -14.21307 -14.07490 -13.66966 -13.50164 -13.46462 -13.31776 -13.12197 -12.79879 -12.62438 -12.58973 -12.54975 -12.45137 -12.28850 -12.24669 -12.10235 -12.02854 -11.71693 -11.60573 -11.56460 -11.46183 -10.79652 -10.56886 -9.95461 -9.84753 -9.03707 -8.74887 -7.74883 -5.22642 0.38913 0.42947 1.50853 1.53875 1.58636 1.76414 2.27209 2.45459 2.55533 2.81089 3.38681 3.66925 3.78749 3.82532 3.95276 4.05627 4.08359 4.09766 4.14813 4.24175 4.32765 4.37082 4.44350 4.44596 4.49033 4.63610 4.64149 4.69616 4.75302 4.85871 4.89292 4.90654 4.93696 4.94100 5.10547 5.13070 5.18338 5.21644 5.29800 5.32816 5.33643 5.40305 5.51028 5.67285 5.72441 5.73805 5.77892 5.84039 6.37934 6.47556 6.75506 7.21059 7.38166 7.92805 8.38314 9.26421 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.002511 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.289514 B =11147.689193 C =12834.480742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.112 3.888 5 C -0.207 4.207 6 C -0.078 4.078 7 C -0.124 4.124 8 C -0.047 4.047 9 C -0.125 4.125 10 C 0.507 3.493 11 O -0.594 6.594 12 N -0.706 5.706 13 C 0.114 3.886 14 C 0.156 3.844 15 H 0.074 0.926 16 C -0.149 4.149 17 N -0.601 5.601 18 C 0.183 3.817 19 C -0.258 4.258 20 H 0.073 0.927 21 C -0.043 4.043 22 N -0.929 5.929 23 Si 0.958 3.042 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.274 1.274 27 C -0.083 4.083 28 C -0.164 4.164 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.410 0.590 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.000 1.000 47 H 0.014 0.986 48 H 0.021 0.979 49 H 0.245 0.755 50 H 0.134 0.866 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -12.106 -10.782 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.250 6.250 4 C 0.067 3.933 5 C -0.226 4.226 6 C -0.096 4.096 7 C -0.124 4.124 8 C -0.085 4.085 9 C -0.165 4.165 10 C 0.295 3.705 11 O -0.476 6.476 12 N -0.355 5.355 13 C -0.012 4.012 14 C 0.049 3.951 15 H 0.092 0.908 16 C -0.209 4.209 17 N -0.325 5.325 18 C 0.038 3.962 19 C -0.388 4.388 20 H 0.091 0.909 21 C -0.239 4.239 22 N -0.575 5.575 23 Si 0.788 3.212 24 H -0.213 1.213 25 H -0.229 1.229 26 H -0.200 1.200 27 C -0.101 4.101 28 C -0.183 4.183 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.246 0.754 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.032 0.968 48 H 0.039 0.961 49 H 0.054 0.946 50 H 0.151 0.849 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.828 -11.796 -11.455 19.687 hybrid contribution -0.628 0.423 1.401 1.593 sum -11.456 -11.373 -10.053 19.017 Atomic orbital electron populations 1.21807 0.91574 1.04174 1.03106 1.23059 0.96860 0.80829 1.02267 1.86047 1.18874 1.31320 1.88727 1.19167 0.82704 0.94510 0.96942 1.21447 0.94074 0.98692 1.08372 1.21101 0.94705 0.96987 0.96826 1.19838 0.95191 0.93661 1.03728 1.20112 0.90428 1.03350 0.94622 1.21604 0.90193 1.05086 0.99644 1.21109 0.90910 0.75400 0.83123 1.90609 1.71258 1.53364 1.32382 1.45984 1.09008 1.71503 1.09000 1.21828 0.80597 0.99805 0.99004 1.20840 0.92164 0.92599 0.89512 0.90805 1.22065 0.95399 1.01630 1.01764 1.44058 1.55746 1.02554 1.30118 1.20399 0.94755 0.85004 0.96041 1.19447 1.08966 1.07893 1.02474 0.90913 1.25589 0.97958 0.99349 1.00960 1.70229 1.29433 1.21949 1.35901 0.85485 0.77435 0.77098 0.81185 1.21312 1.22885 1.19970 1.21063 0.92247 0.99411 0.97425 1.20587 0.95351 0.95451 1.06868 0.92083 0.91813 0.88127 0.90961 0.91305 0.83390 0.83905 0.90318 0.91605 0.89266 0.87349 0.75427 0.91329 0.94347 0.92811 0.90489 0.93430 0.98167 0.96756 0.96084 0.94599 0.84854 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.33 -7.27 10.14 -92.44 -0.94 -8.21 16 4 C 0.11 2.59 6.69 22.51 0.15 2.74 16 5 C -0.21 -4.18 9.04 22.37 0.20 -3.97 16 6 C -0.08 -1.65 9.69 22.26 0.22 -1.43 16 7 C -0.12 -2.99 5.13 -19.85 -0.10 -3.09 16 8 C -0.05 -1.24 4.63 29.85 0.14 -1.11 16 9 C -0.13 -3.63 5.68 29.85 0.17 -3.46 16 10 C 0.51 18.30 7.83 87.66 0.69 18.99 16 11 O -0.59 -24.53 15.98 -3.05 -0.05 -24.58 16 12 N -0.71 -26.33 5.39 -463.06 -2.49 -28.82 16 13 C 0.11 4.11 4.97 86.38 0.43 4.54 16 14 C 0.16 5.68 2.87 45.00 0.13 5.81 16 15 H 0.07 2.61 7.86 -2.39 -0.02 2.59 16 16 C -0.15 -4.57 9.18 71.98 0.66 -3.91 16 17 N -0.60 -27.22 2.29 -702.79 -1.61 -28.83 16 18 C 0.18 8.76 8.10 127.77 1.04 9.79 16 19 C -0.26 -12.77 9.33 84.03 0.78 -11.98 16 20 H 0.07 3.48 7.81 -2.92 -0.02 3.46 16 21 C -0.04 -2.21 5.10 84.86 0.43 -1.78 16 22 N -0.93 -51.49 10.63 21.65 0.23 -51.26 16 23 Si 0.96 42.73 29.57 68.60 2.03 44.76 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 C -0.08 -2.04 9.69 22.26 0.22 -1.83 16 28 C -0.16 -3.95 9.99 22.37 0.22 -3.73 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.83 7.67 -2.39 -0.02 0.81 16 33 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 34 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.08 2.02 8.04 -2.39 -0.02 2.00 16 37 H 0.07 1.88 8.04 -2.39 -0.02 1.86 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.41 16.18 7.89 -92.71 -0.73 15.44 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.05 1.49 6.66 -2.39 -0.02 1.48 16 46 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 47 H 0.01 0.73 7.20 -2.39 -0.02 0.71 16 48 H 0.02 0.88 6.43 -2.38 -0.02 0.87 16 49 H 0.24 13.53 8.31 -92.71 -0.77 12.76 16 50 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 51 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -63.34 413.44 3.85 -59.49 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.17 Total: 31.68 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.51 Total: 5.78 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -3.87 Total: -108.92 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.99 Total: -32.79 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -63.34 3.85 -59.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275865573.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.221 kcal (2) G-P(sol) polarization free energy of solvation -63.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds