Wall clock time and date at job start Tue Mar 31 2020 19:26:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42898 * 109.46503 * 2 1
4 4 C 1.35911 * 116.99468 * 179.97438 * 3 2 1
5 5 C 1.38857 * 119.98676 * 0.03192 * 4 3 2
6 6 C 1.38245 * 120.24018 * 180.02562 * 5 4 3
7 7 C 1.38009 * 120.20356 * 359.67020 * 6 5 4
8 8 C 1.39564 * 119.96736 * 0.58169 * 7 6 5
9 9 C 1.47859 * 120.11803 * 179.72168 * 8 7 6
10 10 O 1.21553 * 119.99996 * 179.72500 * 9 8 7
11 11 N 1.34777 * 120.00021 * 359.44452 * 9 8 7
12 12 C 1.46499 * 120.00199 * 180.27513 * 11 9 8
13 13 H 1.09001 * 109.46948 * 35.00281 * 12 11 9
14 14 C 1.53001 * 109.47259 * 155.00444 * 12 11 9
15 15 N 1.46507 * 109.46831 * 304.99942 * 14 12 11
16 16 C 1.36930 * 119.99753 * 179.97438 * 15 14 12
17 17 H 1.08001 * 120.00041 * 0.02562 * 16 15 14
18 18 C 1.38812 * 119.99929 * 180.02562 * 16 15 14
19 19 N 1.31619 * 120.00012 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99955 * 0.02562 * 18 16 15
21 21 H 1.48503 * 109.47005 * 90.00015 * 20 18 16
22 22 H 1.48496 * 109.47377 * 209.99554 * 20 18 16
23 23 H 1.48497 * 109.47125 * 330.00118 * 20 18 16
24 24 C 1.52997 * 109.47288 * 275.00460 * 12 11 9
25 25 C 1.53005 * 109.47302 * 59.99680 * 24 12 11
26 26 C 1.53000 * 109.47350 * 179.97438 * 24 12 11
27 27 C 1.52997 * 109.47394 * 299.99753 * 24 12 11
28 28 C 1.38455 * 119.98498 * 179.97438 * 4 3 2
29 29 H 1.08999 * 109.47288 * 59.99840 * 1 2 3
30 30 H 1.09007 * 109.46710 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47058 * 299.99457 * 1 2 3
32 32 H 1.08996 * 109.46614 * 240.00245 * 2 1 3
33 33 H 1.08999 * 109.46843 * 120.00456 * 2 1 3
34 34 H 1.07998 * 119.88089 * 359.97438 * 5 4 3
35 35 H 1.07993 * 119.89538 * 179.97438 * 6 5 4
36 36 H 1.08000 * 120.01584 * 180.32410 * 7 6 5
37 37 H 0.97001 * 119.99727 * 0.28409 * 11 9 8
38 38 H 1.08998 * 109.47177 * 65.00135 * 14 12 11
39 39 H 1.09000 * 109.47058 * 185.00784 * 14 12 11
40 40 H 0.97002 * 120.00137 * 0.02562 * 15 14 12
41 41 H 0.97001 * 119.99654 * 179.97438 * 19 18 16
42 42 H 1.09001 * 109.47005 * 60.00136 * 25 24 12
43 43 H 1.08998 * 109.47292 * 180.02562 * 25 24 12
44 44 H 1.08998 * 109.46918 * 300.00250 * 25 24 12
45 45 H 1.09000 * 109.46923 * 59.99556 * 26 24 12
46 46 H 1.08998 * 109.47187 * 179.97438 * 26 24 12
47 47 H 1.09001 * 109.47157 * 299.99986 * 26 24 12
48 48 H 1.09007 * 109.46730 * 59.99831 * 27 24 12
49 49 H 1.08998 * 109.47567 * 179.97438 * 27 24 12
50 50 H 1.09006 * 109.47041 * 300.00574 * 27 24 12
51 51 H 1.07997 * 120.10254 * 0.03364 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0062 1.3473 0.0000
4 6 3.3536 1.5254 0.0005
5 6 4.1993 0.4240 0.0004
6 6 5.5706 0.5991 0.0015
7 6 6.1082 1.8702 -0.0042
8 6 5.2663 2.9832 0.0013
9 6 5.8388 4.3465 0.0015
10 8 5.1035 5.3144 0.0012
11 7 7.1758 4.5159 0.0077
12 6 7.7430 5.8666 0.0140
13 1 7.1050 6.5259 0.6027
14 6 9.1433 5.8289 0.6295
15 7 9.0760 5.2174 1.9591
16 6 10.2150 5.0752 2.7057
17 1 11.1629 5.4141 2.3145
18 6 10.1513 4.4953 3.9653
19 7 11.2461 4.3590 4.6831
20 14 8.5119 3.9083 4.6415
21 1 8.2940 2.4921 4.2512
22 1 8.5194 4.0180 6.1224
23 1 7.4191 4.7480 4.0884
24 6 7.8307 6.3897 -1.4211
25 6 6.4304 6.4274 -2.0366
26 6 8.4224 7.8006 -1.4144
27 6 8.7262 5.4645 -2.2474
28 6 3.8825 2.8050 0.0000
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3633 0.5137 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 3.7842 -0.5730 0.0003
35 1 6.2231 -0.2614 0.0018
36 1 7.1799 2.0034 -0.0086
37 1 7.7625 3.7435 0.0079
38 1 9.8045 5.2415 -0.0076
39 1 9.5296 6.8445 0.7159
40 1 8.2247 4.9126 2.3103
41 1 11.2015 3.9541 5.5635
42 1 5.7924 7.0866 -1.4479
43 1 6.4929 6.7997 -3.0591
44 1 6.0084 5.4225 -2.0413
45 1 9.4199 7.7741 -0.9758
46 1 8.4853 8.1731 -2.4369
47 1 7.7841 8.4596 -0.8259
48 1 8.3041 4.4595 -2.2521
49 1 8.7882 5.8369 -3.2699
50 1 9.7238 5.4376 -1.8089
51 1 3.2259 3.6624 -0.0002
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001279009031.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:26:15
Heat of formation + Delta-G solvation = -43.276739 kcal
Electronic energy + Delta-G solvation = -29785.030847 eV
Core-core repulsion = 25877.959498 eV
Total energy + Delta-G solvation = -3907.071349 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.69310 -39.88579 -37.96812 -36.93964 -34.60149 -33.44116 -32.30262 -31.47501
-31.07299 -29.70043 -28.08840 -27.16356 -26.78053 -24.84113 -23.72169 -22.65345
-22.57974 -21.31814 -20.37439 -18.89726 -18.60109 -17.55897 -16.68897 -16.42060
-16.35462 -15.91938 -15.63547 -15.49446 -14.66131 -14.26723 -14.18679 -13.93275
-13.78745 -13.64190 -13.56684 -13.41564 -13.07952 -12.96783 -12.76458 -12.35374
-12.26401 -12.20900 -11.99767 -11.86330 -11.84075 -11.54304 -11.41154 -11.21870
-11.12722 -11.05188 -10.87179 -10.75115 -10.55969 -10.30620 -10.01170 -9.75136
-9.62630 -9.19245 -8.92937 -8.71150 -8.44017 -7.26815 -5.80025 -3.15850
0.71582 1.24243 2.81254 2.90067 3.35014 3.40100 3.42482 3.45115
3.79190 4.49209 4.54475 4.56930 4.57506 4.73220 4.81065 4.82507
4.89397 4.95183 5.03090 5.07870 5.14659 5.27554 5.37307 5.40670
5.45040 5.49147 5.61880 5.65666 5.72629 5.75930 5.79504 5.86369
5.87456 6.00672 6.03689 6.08542 6.12237 6.17635 6.20400 6.26389
6.36356 6.38983 6.42753 6.45056 6.56819 6.66594 6.85256 7.15896
7.70848 7.95505 8.37063 8.39364 9.17699 9.90174 10.09602 11.38146
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.009408 B = 0.003851 C = 0.002978
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2975.377653 B = 7269.132102 C = 9400.468028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.054 3.946
3 O -0.315 6.315
4 C 0.119 3.881
5 C -0.188 4.188
6 C -0.085 4.085
7 C -0.122 4.122
8 C -0.091 4.091
9 C 0.557 3.443
10 O -0.533 6.533
11 N -0.706 5.706
12 C 0.145 3.855
13 H 0.089 0.911
14 C 0.146 3.854
15 N -0.755 5.755
16 C -0.245 4.245
17 H 0.091 0.909
18 C 0.008 3.992
19 N -0.933 5.933
20 Si 0.879 3.121
21 H -0.283 1.283
22 H -0.290 1.290
23 H -0.277 1.277
24 C -0.075 4.075
25 C -0.130 4.130
26 C -0.141 4.141
27 C -0.143 4.143
28 C -0.094 4.094
29 H 0.066 0.934
30 H 0.078 0.922
31 H 0.067 0.933
32 H 0.062 0.938
33 H 0.062 0.938
34 H 0.130 0.870
35 H 0.132 0.868
36 H 0.132 0.868
37 H 0.403 0.597
38 H 0.038 0.962
39 H 0.045 0.955
40 H 0.362 0.638
41 H 0.260 0.740
42 H 0.061 0.939
43 H 0.042 0.958
44 H 0.051 0.949
45 H 0.064 0.936
46 H 0.053 0.947
47 H 0.056 0.944
48 H 0.052 0.948
49 H 0.050 0.950
50 H 0.064 0.936
51 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.076 -7.880 -15.414 23.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.022 4.022
3 O -0.229 6.229
4 C 0.074 3.926
5 C -0.207 4.207
6 C -0.104 4.104
7 C -0.141 4.141
8 C -0.094 4.094
9 C 0.343 3.657
10 O -0.411 6.411
11 N -0.357 5.357
12 C 0.040 3.960
13 H 0.107 0.893
14 C 0.018 3.982
15 N -0.401 5.401
16 C -0.374 4.374
17 H 0.109 0.891
18 C -0.188 4.188
19 N -0.580 5.580
20 Si 0.709 3.291
21 H -0.210 1.210
22 H -0.217 1.217
23 H -0.203 1.203
24 C -0.077 4.077
25 C -0.188 4.188
26 C -0.199 4.199
27 C -0.200 4.200
28 C -0.114 4.114
29 H 0.085 0.915
30 H 0.096 0.904
31 H 0.086 0.914
32 H 0.080 0.920
33 H 0.080 0.920
34 H 0.148 0.852
35 H 0.150 0.850
36 H 0.149 0.851
37 H 0.239 0.761
38 H 0.055 0.945
39 H 0.063 0.937
40 H 0.195 0.805
41 H 0.070 0.930
42 H 0.080 0.920
43 H 0.061 0.939
44 H 0.070 0.930
45 H 0.082 0.918
46 H 0.072 0.928
47 H 0.075 0.925
48 H 0.071 0.929
49 H 0.069 0.931
50 H 0.083 0.917
51 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -16.493 -7.018 -15.331 23.586
hybrid contribution -0.690 -1.204 0.736 1.571
sum -17.183 -8.222 -14.595 23.997
Atomic orbital electron populations
1.21779 0.92663 1.02840 1.03673 1.22798 0.95986 0.81971 1.01405
1.86094 1.18730 1.29266 1.88777 1.18800 0.82505 0.93757 0.97505
1.21406 0.94455 0.98078 1.06775 1.20897 0.94298 0.97301 0.97859
1.21327 0.99994 0.92009 1.00740 1.19799 0.93260 0.93491 1.02878
1.18081 0.82639 0.88271 0.76668 1.90763 1.59639 1.41031 1.49687
1.45922 1.06123 1.09838 1.73774 1.21392 0.96144 0.83031 0.95442
0.89314 1.21093 0.92306 0.97808 0.86958 1.42729 1.07533 1.74214
1.15661 1.19031 0.87669 1.33609 0.97120 0.89118 1.24642 0.96330
1.01031 0.96829 1.69697 1.26155 1.49853 1.12323 0.86629 0.84914
0.78938 0.78603 1.21005 1.21660 1.20300 1.20883 0.96193 0.95825
0.94774 1.21895 0.95444 1.02176 0.99250 1.21895 1.01348 0.95150
1.01530 1.21928 0.99852 0.99059 0.99163 1.20444 0.94061 0.95436
1.01426 0.91460 0.90361 0.91408 0.92006 0.91956 0.85232 0.84993
0.85057 0.76061 0.94456 0.93741 0.80460 0.93033 0.91969 0.93863
0.92952 0.91752 0.92772 0.92527 0.92902 0.93050 0.91740 0.83883
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16
2 C 0.05 0.41 5.46 37.16 0.20 0.61 16
3 O -0.31 -3.61 10.13 -19.46 -0.20 -3.81 16
4 C 0.12 1.47 6.68 -39.27 -0.26 1.21 16
5 C -0.19 -1.97 9.03 -39.35 -0.36 -2.33 16
6 C -0.09 -0.91 10.03 -39.66 -0.40 -1.31 16
7 C -0.12 -1.51 9.54 -39.17 -0.37 -1.88 16
8 C -0.09 -1.30 5.87 -104.99 -0.62 -1.92 16
9 C 0.56 8.94 6.13 -12.32 -0.08 8.86 16
10 O -0.53 -9.78 13.47 5.32 0.07 -9.70 16
11 N -0.71 -10.74 3.59 -54.75 -0.20 -10.94 16
12 C 0.14 2.29 1.69 -67.93 -0.11 2.18 16
13 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16
14 C 0.15 2.66 5.10 -4.04 -0.02 2.64 16
15 N -0.76 -17.41 5.24 -59.91 -0.31 -17.73 16
16 C -0.24 -6.76 10.47 -15.06 -0.16 -6.91 16
17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16
18 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16
19 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16
20 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16
21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16
22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16
23 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16
24 C -0.08 -0.99 0.62 -154.51 -0.10 -1.09 16
25 C -0.13 -1.78 7.00 37.16 0.26 -1.52 16
26 C -0.14 -1.73 8.12 37.16 0.30 -1.43 16
27 C -0.14 -1.70 7.97 37.16 0.30 -1.41 16
28 C -0.09 -1.32 9.53 -39.02 -0.37 -1.69 16
29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16
31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16
33 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16
34 H 0.13 1.01 6.28 -52.49 -0.33 0.68 16
35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16
36 H 0.13 1.47 6.40 -52.49 -0.34 1.13 16
37 H 0.40 5.72 6.63 -40.82 -0.27 5.45 16
38 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16
39 H 0.04 0.83 6.71 -51.93 -0.35 0.48 16
40 H 0.36 8.46 5.20 -40.82 -0.21 8.25 16
41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
42 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16
43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16
44 H 0.05 0.76 5.77 -51.93 -0.30 0.46 16
45 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16
46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
48 H 0.05 0.62 7.60 -51.93 -0.39 0.23 16
49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
50 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16
51 H 0.14 2.07 7.65 -52.49 -0.40 1.67 16
LS Contribution 397.01 15.07 5.98 5.98
Total: -1.00 -33.05 397.01 -8.22 -41.27
By element:
Atomic # 1 Polarization: 20.07 SS G_CDS: -8.13 Total: 11.94 kcal
Atomic # 6 Polarization: -4.89 SS G_CDS: -1.49 Total: -6.38 kcal
Atomic # 7 Polarization: -57.19 SS G_CDS: 0.26 Total: -56.92 kcal
Atomic # 8 Polarization: -13.38 SS G_CDS: -0.13 Total: -13.51 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -33.05 -8.22 -41.27 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001279009031.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.006 kcal
(2) G-P(sol) polarization free energy of solvation -33.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.055 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.277 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds