Wall clock time and date at job start Tue Mar 31 2020 19:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.46503 * 2 1 4 4 C 1.35911 * 116.99468 * 179.97438 * 3 2 1 5 5 C 1.38857 * 119.98676 * 0.03192 * 4 3 2 6 6 C 1.38245 * 120.24018 * 180.02562 * 5 4 3 7 7 C 1.38009 * 120.20356 * 359.67020 * 6 5 4 8 8 C 1.39564 * 119.96736 * 0.58169 * 7 6 5 9 9 C 1.47859 * 120.11803 * 179.72168 * 8 7 6 10 10 O 1.21553 * 119.99996 * 179.72500 * 9 8 7 11 11 N 1.34777 * 120.00021 * 359.44452 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27513 * 11 9 8 13 13 H 1.09001 * 109.46948 * 35.00281 * 12 11 9 14 14 C 1.53001 * 109.47259 * 155.00444 * 12 11 9 15 15 N 1.46507 * 109.46831 * 304.99942 * 14 12 11 16 16 C 1.36930 * 119.99753 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99929 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00012 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99955 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47005 * 90.00015 * 20 18 16 22 22 H 1.48496 * 109.47377 * 209.99554 * 20 18 16 23 23 H 1.48497 * 109.47125 * 330.00118 * 20 18 16 24 24 C 1.52997 * 109.47288 * 275.00460 * 12 11 9 25 25 C 1.53005 * 109.47302 * 59.99680 * 24 12 11 26 26 C 1.53000 * 109.47350 * 179.97438 * 24 12 11 27 27 C 1.52997 * 109.47394 * 299.99753 * 24 12 11 28 28 C 1.38455 * 119.98498 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47288 * 59.99840 * 1 2 3 30 30 H 1.09007 * 109.46710 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47058 * 299.99457 * 1 2 3 32 32 H 1.08996 * 109.46614 * 240.00245 * 2 1 3 33 33 H 1.08999 * 109.46843 * 120.00456 * 2 1 3 34 34 H 1.07998 * 119.88089 * 359.97438 * 5 4 3 35 35 H 1.07993 * 119.89538 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.01584 * 180.32410 * 7 6 5 37 37 H 0.97001 * 119.99727 * 0.28409 * 11 9 8 38 38 H 1.08998 * 109.47177 * 65.00135 * 14 12 11 39 39 H 1.09000 * 109.47058 * 185.00784 * 14 12 11 40 40 H 0.97002 * 120.00137 * 0.02562 * 15 14 12 41 41 H 0.97001 * 119.99654 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47005 * 60.00136 * 25 24 12 43 43 H 1.08998 * 109.47292 * 180.02562 * 25 24 12 44 44 H 1.08998 * 109.46918 * 300.00250 * 25 24 12 45 45 H 1.09000 * 109.46923 * 59.99556 * 26 24 12 46 46 H 1.08998 * 109.47187 * 179.97438 * 26 24 12 47 47 H 1.09001 * 109.47157 * 299.99986 * 26 24 12 48 48 H 1.09007 * 109.46730 * 59.99831 * 27 24 12 49 49 H 1.08998 * 109.47567 * 179.97438 * 27 24 12 50 50 H 1.09006 * 109.47041 * 300.00574 * 27 24 12 51 51 H 1.07997 * 120.10254 * 0.03364 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1993 0.4240 0.0004 6 6 5.5706 0.5991 0.0015 7 6 6.1082 1.8702 -0.0042 8 6 5.2663 2.9832 0.0013 9 6 5.8388 4.3465 0.0015 10 8 5.1035 5.3144 0.0012 11 7 7.1758 4.5159 0.0077 12 6 7.7430 5.8666 0.0140 13 1 7.1050 6.5259 0.6027 14 6 9.1433 5.8289 0.6295 15 7 9.0760 5.2174 1.9591 16 6 10.2150 5.0752 2.7057 17 1 11.1629 5.4141 2.3145 18 6 10.1513 4.4953 3.9653 19 7 11.2461 4.3590 4.6831 20 14 8.5119 3.9083 4.6415 21 1 8.2940 2.4921 4.2512 22 1 8.5194 4.0180 6.1224 23 1 7.4191 4.7480 4.0884 24 6 7.8307 6.3897 -1.4211 25 6 6.4304 6.4274 -2.0366 26 6 8.4224 7.8006 -1.4144 27 6 8.7262 5.4645 -2.2474 28 6 3.8825 2.8050 0.0000 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7842 -0.5730 0.0003 35 1 6.2231 -0.2614 0.0018 36 1 7.1799 2.0034 -0.0086 37 1 7.7625 3.7435 0.0079 38 1 9.8045 5.2415 -0.0076 39 1 9.5296 6.8445 0.7159 40 1 8.2247 4.9126 2.3103 41 1 11.2015 3.9541 5.5635 42 1 5.7924 7.0866 -1.4479 43 1 6.4929 6.7997 -3.0591 44 1 6.0084 5.4225 -2.0413 45 1 9.4199 7.7741 -0.9758 46 1 8.4853 8.1731 -2.4369 47 1 7.7841 8.4596 -0.8259 48 1 8.3041 4.4595 -2.2521 49 1 8.7882 5.8369 -3.2699 50 1 9.7238 5.4376 -1.8089 51 1 3.2259 3.6624 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279009031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:15 Heat of formation + Delta-G solvation = -43.276739 kcal Electronic energy + Delta-G solvation = -29785.030847 eV Core-core repulsion = 25877.959498 eV Total energy + Delta-G solvation = -3907.071349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69310 -39.88579 -37.96812 -36.93964 -34.60149 -33.44116 -32.30262 -31.47501 -31.07299 -29.70043 -28.08840 -27.16356 -26.78053 -24.84113 -23.72169 -22.65345 -22.57974 -21.31814 -20.37439 -18.89726 -18.60109 -17.55897 -16.68897 -16.42060 -16.35462 -15.91938 -15.63547 -15.49446 -14.66131 -14.26723 -14.18679 -13.93275 -13.78745 -13.64190 -13.56684 -13.41564 -13.07952 -12.96783 -12.76458 -12.35374 -12.26401 -12.20900 -11.99767 -11.86330 -11.84075 -11.54304 -11.41154 -11.21870 -11.12722 -11.05188 -10.87179 -10.75115 -10.55969 -10.30620 -10.01170 -9.75136 -9.62630 -9.19245 -8.92937 -8.71150 -8.44017 -7.26815 -5.80025 -3.15850 0.71582 1.24243 2.81254 2.90067 3.35014 3.40100 3.42482 3.45115 3.79190 4.49209 4.54475 4.56930 4.57506 4.73220 4.81065 4.82507 4.89397 4.95183 5.03090 5.07870 5.14659 5.27554 5.37307 5.40670 5.45040 5.49147 5.61880 5.65666 5.72629 5.75930 5.79504 5.86369 5.87456 6.00672 6.03689 6.08542 6.12237 6.17635 6.20400 6.26389 6.36356 6.38983 6.42753 6.45056 6.56819 6.66594 6.85256 7.15896 7.70848 7.95505 8.37063 8.39364 9.17699 9.90174 10.09602 11.38146 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009408 B = 0.003851 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.377653 B = 7269.132102 C = 9400.468028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.119 3.881 5 C -0.188 4.188 6 C -0.085 4.085 7 C -0.122 4.122 8 C -0.091 4.091 9 C 0.557 3.443 10 O -0.533 6.533 11 N -0.706 5.706 12 C 0.145 3.855 13 H 0.089 0.911 14 C 0.146 3.854 15 N -0.755 5.755 16 C -0.245 4.245 17 H 0.091 0.909 18 C 0.008 3.992 19 N -0.933 5.933 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.075 4.075 25 C -0.130 4.130 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.094 4.094 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.403 0.597 38 H 0.038 0.962 39 H 0.045 0.955 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.064 0.936 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.076 -7.880 -15.414 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.229 6.229 4 C 0.074 3.926 5 C -0.207 4.207 6 C -0.104 4.104 7 C -0.141 4.141 8 C -0.094 4.094 9 C 0.343 3.657 10 O -0.411 6.411 11 N -0.357 5.357 12 C 0.040 3.960 13 H 0.107 0.893 14 C 0.018 3.982 15 N -0.401 5.401 16 C -0.374 4.374 17 H 0.109 0.891 18 C -0.188 4.188 19 N -0.580 5.580 20 Si 0.709 3.291 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.077 4.077 25 C -0.188 4.188 26 C -0.199 4.199 27 C -0.200 4.200 28 C -0.114 4.114 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.239 0.761 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.083 0.917 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.493 -7.018 -15.331 23.586 hybrid contribution -0.690 -1.204 0.736 1.571 sum -17.183 -8.222 -14.595 23.997 Atomic orbital electron populations 1.21779 0.92663 1.02840 1.03673 1.22798 0.95986 0.81971 1.01405 1.86094 1.18730 1.29266 1.88777 1.18800 0.82505 0.93757 0.97505 1.21406 0.94455 0.98078 1.06775 1.20897 0.94298 0.97301 0.97859 1.21327 0.99994 0.92009 1.00740 1.19799 0.93260 0.93491 1.02878 1.18081 0.82639 0.88271 0.76668 1.90763 1.59639 1.41031 1.49687 1.45922 1.06123 1.09838 1.73774 1.21392 0.96144 0.83031 0.95442 0.89314 1.21093 0.92306 0.97808 0.86958 1.42729 1.07533 1.74214 1.15661 1.19031 0.87669 1.33609 0.97120 0.89118 1.24642 0.96330 1.01031 0.96829 1.69697 1.26155 1.49853 1.12323 0.86629 0.84914 0.78938 0.78603 1.21005 1.21660 1.20300 1.20883 0.96193 0.95825 0.94774 1.21895 0.95444 1.02176 0.99250 1.21895 1.01348 0.95150 1.01530 1.21928 0.99852 0.99059 0.99163 1.20444 0.94061 0.95436 1.01426 0.91460 0.90361 0.91408 0.92006 0.91956 0.85232 0.84993 0.85057 0.76061 0.94456 0.93741 0.80460 0.93033 0.91969 0.93863 0.92952 0.91752 0.92772 0.92527 0.92902 0.93050 0.91740 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.61 10.13 -19.46 -0.20 -3.81 16 4 C 0.12 1.47 6.68 -39.27 -0.26 1.21 16 5 C -0.19 -1.97 9.03 -39.35 -0.36 -2.33 16 6 C -0.09 -0.91 10.03 -39.66 -0.40 -1.31 16 7 C -0.12 -1.51 9.54 -39.17 -0.37 -1.88 16 8 C -0.09 -1.30 5.87 -104.99 -0.62 -1.92 16 9 C 0.56 8.94 6.13 -12.32 -0.08 8.86 16 10 O -0.53 -9.78 13.47 5.32 0.07 -9.70 16 11 N -0.71 -10.74 3.59 -54.75 -0.20 -10.94 16 12 C 0.14 2.29 1.69 -67.93 -0.11 2.18 16 13 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 14 C 0.15 2.66 5.10 -4.04 -0.02 2.64 16 15 N -0.76 -17.41 5.24 -59.91 -0.31 -17.73 16 16 C -0.24 -6.76 10.47 -15.06 -0.16 -6.91 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 19 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 20 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 24 C -0.08 -0.99 0.62 -154.51 -0.10 -1.09 16 25 C -0.13 -1.78 7.00 37.16 0.26 -1.52 16 26 C -0.14 -1.73 8.12 37.16 0.30 -1.43 16 27 C -0.14 -1.70 7.97 37.16 0.30 -1.41 16 28 C -0.09 -1.32 9.53 -39.02 -0.37 -1.69 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 34 H 0.13 1.01 6.28 -52.49 -0.33 0.68 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.47 6.40 -52.49 -0.34 1.13 16 37 H 0.40 5.72 6.63 -40.82 -0.27 5.45 16 38 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16 39 H 0.04 0.83 6.71 -51.93 -0.35 0.48 16 40 H 0.36 8.46 5.20 -40.82 -0.21 8.25 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.76 5.77 -51.93 -0.30 0.46 16 45 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.62 7.60 -51.93 -0.39 0.23 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 51 H 0.14 2.07 7.65 -52.49 -0.40 1.67 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -33.05 397.01 -8.22 -41.27 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -8.13 Total: 11.94 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.49 Total: -6.38 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.26 Total: -56.92 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.13 Total: -13.51 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.05 -8.22 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279009031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.006 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds