Wall clock time and date at job start Tue Mar 31 2020 19:26:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42898 * 109.46503 * 2 1
4 4 C 1.35911 * 116.99468 * 179.97438 * 3 2 1
5 5 C 1.38857 * 119.98676 * 0.03192 * 4 3 2
6 6 C 1.38245 * 120.24018 * 180.02562 * 5 4 3
7 7 C 1.38009 * 120.20356 * 359.67020 * 6 5 4
8 8 C 1.39564 * 119.96736 * 0.58169 * 7 6 5
9 9 C 1.47859 * 120.11803 * 179.72168 * 8 7 6
10 10 O 1.21553 * 119.99996 * 179.72500 * 9 8 7
11 11 N 1.34777 * 120.00021 * 359.44452 * 9 8 7
12 12 C 1.46499 * 120.00199 * 180.27513 * 11 9 8
13 13 H 1.09001 * 109.46948 * 35.00281 * 12 11 9
14 14 C 1.53001 * 109.47259 * 155.00444 * 12 11 9
15 15 N 1.46507 * 109.46831 * 304.99942 * 14 12 11
16 16 C 1.36930 * 119.99753 * 179.97438 * 15 14 12
17 17 H 1.08001 * 120.00041 * 0.02562 * 16 15 14
18 18 C 1.38812 * 119.99929 * 180.02562 * 16 15 14
19 19 N 1.31619 * 120.00012 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99955 * 0.02562 * 18 16 15
21 21 H 1.48503 * 109.47005 * 90.00015 * 20 18 16
22 22 H 1.48496 * 109.47377 * 209.99554 * 20 18 16
23 23 H 1.48497 * 109.47125 * 330.00118 * 20 18 16
24 24 C 1.52997 * 109.47288 * 275.00460 * 12 11 9
25 25 C 1.53005 * 109.47302 * 59.99680 * 24 12 11
26 26 C 1.53000 * 109.47350 * 179.97438 * 24 12 11
27 27 C 1.52997 * 109.47394 * 299.99753 * 24 12 11
28 28 C 1.38455 * 119.98498 * 179.97438 * 4 3 2
29 29 H 1.08999 * 109.47288 * 59.99840 * 1 2 3
30 30 H 1.09007 * 109.46710 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47058 * 299.99457 * 1 2 3
32 32 H 1.08996 * 109.46614 * 240.00245 * 2 1 3
33 33 H 1.08999 * 109.46843 * 120.00456 * 2 1 3
34 34 H 1.07998 * 119.88089 * 359.97438 * 5 4 3
35 35 H 1.07993 * 119.89538 * 179.97438 * 6 5 4
36 36 H 1.08000 * 120.01584 * 180.32410 * 7 6 5
37 37 H 0.97001 * 119.99727 * 0.28409 * 11 9 8
38 38 H 1.08998 * 109.47177 * 65.00135 * 14 12 11
39 39 H 1.09000 * 109.47058 * 185.00784 * 14 12 11
40 40 H 0.97002 * 120.00137 * 0.02562 * 15 14 12
41 41 H 0.97001 * 119.99654 * 179.97438 * 19 18 16
42 42 H 1.09001 * 109.47005 * 60.00136 * 25 24 12
43 43 H 1.08998 * 109.47292 * 180.02562 * 25 24 12
44 44 H 1.08998 * 109.46918 * 300.00250 * 25 24 12
45 45 H 1.09000 * 109.46923 * 59.99556 * 26 24 12
46 46 H 1.08998 * 109.47187 * 179.97438 * 26 24 12
47 47 H 1.09001 * 109.47157 * 299.99986 * 26 24 12
48 48 H 1.09007 * 109.46730 * 59.99831 * 27 24 12
49 49 H 1.08998 * 109.47567 * 179.97438 * 27 24 12
50 50 H 1.09006 * 109.47041 * 300.00574 * 27 24 12
51 51 H 1.07997 * 120.10254 * 0.03364 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0062 1.3473 0.0000
4 6 3.3536 1.5254 0.0005
5 6 4.1993 0.4240 0.0004
6 6 5.5706 0.5991 0.0015
7 6 6.1082 1.8702 -0.0042
8 6 5.2663 2.9832 0.0013
9 6 5.8388 4.3465 0.0015
10 8 5.1035 5.3144 0.0012
11 7 7.1758 4.5159 0.0077
12 6 7.7430 5.8666 0.0140
13 1 7.1050 6.5259 0.6027
14 6 9.1433 5.8289 0.6295
15 7 9.0760 5.2174 1.9591
16 6 10.2150 5.0752 2.7057
17 1 11.1629 5.4141 2.3145
18 6 10.1513 4.4953 3.9653
19 7 11.2461 4.3590 4.6831
20 14 8.5119 3.9083 4.6415
21 1 8.2940 2.4921 4.2512
22 1 8.5194 4.0180 6.1224
23 1 7.4191 4.7480 4.0884
24 6 7.8307 6.3897 -1.4211
25 6 6.4304 6.4274 -2.0366
26 6 8.4224 7.8006 -1.4144
27 6 8.7262 5.4645 -2.2474
28 6 3.8825 2.8050 0.0000
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3633 0.5137 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 3.7842 -0.5730 0.0003
35 1 6.2231 -0.2614 0.0018
36 1 7.1799 2.0034 -0.0086
37 1 7.7625 3.7435 0.0079
38 1 9.8045 5.2415 -0.0076
39 1 9.5296 6.8445 0.7159
40 1 8.2247 4.9126 2.3103
41 1 11.2015 3.9541 5.5635
42 1 5.7924 7.0866 -1.4479
43 1 6.4929 6.7997 -3.0591
44 1 6.0084 5.4225 -2.0413
45 1 9.4199 7.7741 -0.9758
46 1 8.4853 8.1731 -2.4369
47 1 7.7841 8.4596 -0.8259
48 1 8.3041 4.4595 -2.2521
49 1 8.7882 5.8369 -3.2699
50 1 9.7238 5.4376 -1.8089
51 1 3.2259 3.6624 -0.0002
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001279009031.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:26:14
Heat of formation + Delta-G solvation = -63.746640 kcal
Electronic energy + Delta-G solvation = -29785.918489 eV
Core-core repulsion = 25877.959498 eV
Total energy + Delta-G solvation = -3907.958990 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.77463 -40.88138 -39.03973 -38.01014 -36.34261 -34.78161 -33.39468 -32.92189
-32.14016 -30.61317 -29.59459 -28.15304 -27.87966 -25.96806 -25.12685 -23.70967
-23.47152 -22.87562 -21.42660 -20.13092 -19.94727 -19.14114 -17.73170 -17.39749
-17.12869 -17.04431 -16.91813 -16.50161 -16.34150 -15.87949 -15.28401 -15.17633
-14.80288 -14.76478 -14.70235 -14.49079 -14.39965 -14.23650 -13.82889 -13.41592
-13.34821 -13.21061 -13.04931 -13.00742 -12.91496 -12.79885 -12.64734 -12.53435
-12.36387 -12.20730 -12.04755 -11.91865 -11.84042 -11.69448 -11.63766 -11.32231
-11.06206 -10.92598 -10.18634 -9.93188 -9.32971 -9.30241 -8.03928 -5.36283
-0.26489 0.33249 1.33475 1.36949 1.42252 1.79603 1.93588 2.34736
2.44552 2.78298 3.28155 3.44483 3.60333 3.73419 3.80223 3.97978
4.01288 4.03703 4.05044 4.08569 4.12241 4.28187 4.30024 4.35565
4.41951 4.46689 4.60787 4.76986 4.81891 4.84118 4.86958 4.89792
4.92652 4.96239 5.05175 5.07901 5.11518 5.13352 5.21163 5.23487
5.26018 5.30523 5.32093 5.40760 5.53752 5.56378 5.62893 5.76695
6.19994 6.36637 6.49715 7.05837 7.15700 7.81731 7.99641 9.17485
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.009408 B = 0.003851 C = 0.002978
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2975.377653 B = 7269.132102 C = 9400.468028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.042 3.958
3 O -0.334 6.334
4 C 0.115 3.885
5 C -0.178 4.178
6 C -0.081 4.081
7 C -0.128 4.128
8 C -0.109 4.109
9 C 0.555 3.445
10 O -0.565 6.565
11 N -0.701 5.701
12 C 0.153 3.847
13 H 0.064 0.936
14 C 0.147 3.853
15 N -0.757 5.757
16 C -0.226 4.226
17 H 0.066 0.934
18 C -0.054 4.054
19 N -0.979 5.979
20 Si 0.942 3.058
21 H -0.270 1.270
22 H -0.297 1.297
23 H -0.272 1.272
24 C -0.069 4.069
25 C -0.121 4.121
26 C -0.141 4.141
27 C -0.139 4.139
28 C -0.116 4.116
29 H 0.062 0.938
30 H 0.103 0.897
31 H 0.058 0.942
32 H 0.079 0.921
33 H 0.074 0.926
34 H 0.163 0.837
35 H 0.165 0.835
36 H 0.141 0.859
37 H 0.409 0.591
38 H 0.053 0.947
39 H 0.045 0.955
40 H 0.362 0.638
41 H 0.258 0.742
42 H 0.041 0.959
43 H 0.062 0.938
44 H 0.039 0.961
45 H 0.061 0.939
46 H 0.074 0.926
47 H 0.049 0.951
48 H 0.053 0.947
49 H 0.069 0.931
50 H 0.062 0.938
51 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.021 -10.085 -16.982 26.073
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.032 4.032
3 O -0.249 6.249
4 C 0.070 3.930
5 C -0.196 4.196
6 C -0.098 4.098
7 C -0.147 4.147
8 C -0.112 4.112
9 C 0.343 3.657
10 O -0.445 6.445
11 N -0.352 5.352
12 C 0.048 3.952
13 H 0.082 0.918
14 C 0.021 3.979
15 N -0.403 5.403
16 C -0.357 4.357
17 H 0.084 0.916
18 C -0.246 4.246
19 N -0.630 5.630
20 Si 0.770 3.230
21 H -0.195 1.195
22 H -0.224 1.224
23 H -0.198 1.198
24 C -0.071 4.071
25 C -0.179 4.179
26 C -0.198 4.198
27 C -0.196 4.196
28 C -0.136 4.136
29 H 0.081 0.919
30 H 0.121 0.879
31 H 0.077 0.923
32 H 0.097 0.903
33 H 0.092 0.908
34 H 0.180 0.820
35 H 0.182 0.818
36 H 0.159 0.841
37 H 0.247 0.753
38 H 0.071 0.929
39 H 0.063 0.937
40 H 0.195 0.805
41 H 0.067 0.933
42 H 0.060 0.940
43 H 0.081 0.919
44 H 0.058 0.942
45 H 0.080 0.920
46 H 0.093 0.907
47 H 0.068 0.932
48 H 0.072 0.928
49 H 0.088 0.912
50 H 0.081 0.919
51 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -17.455 -9.226 -16.948 26.019
hybrid contribution -0.424 -0.516 1.141 1.322
sum -17.879 -9.742 -15.807 25.776
Atomic orbital electron populations
1.21822 0.91692 1.04267 1.03032 1.23148 0.96863 0.80424 1.02736
1.86089 1.18323 1.31846 1.88640 1.18870 0.83303 0.93597 0.97279
1.21776 0.94242 0.98892 1.04718 1.21298 0.94865 0.97486 0.96198
1.21517 1.00289 0.92216 1.00672 1.19689 0.93615 0.92975 1.04961
1.18414 0.82511 0.88891 0.75855 1.90740 1.60295 1.42248 1.51239
1.45857 1.06104 1.09710 1.73565 1.21223 0.93934 0.83225 0.96789
0.91818 1.21243 0.94205 0.97516 0.84986 1.42747 1.06093 1.74439
1.17028 1.19031 0.88098 1.31425 0.97101 0.91573 1.25309 0.99425
1.02371 0.97510 1.69849 1.28407 1.51916 1.12816 0.85615 0.80973
0.79107 0.77275 1.19520 1.22408 1.19786 1.20844 0.96522 0.96736
0.92986 1.21785 0.95059 1.01039 0.99996 1.21896 1.00830 0.94339
1.02751 1.21897 0.99103 0.98805 0.99822 1.20401 0.93984 0.96008
1.03226 0.91930 0.87852 0.92259 0.90305 0.90794 0.81984 0.81780
0.84119 0.75340 0.92928 0.93669 0.80502 0.93336 0.93977 0.91870
0.94163 0.91979 0.90687 0.93233 0.92750 0.91222 0.91943 0.85819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16
2 C 0.04 0.54 5.46 71.98 0.39 0.94 16
3 O -0.33 -7.34 10.13 -92.55 -0.94 -8.28 16
4 C 0.11 2.70 6.68 22.47 0.15 2.85 16
5 C -0.18 -3.17 9.03 22.42 0.20 -2.96 16
6 C -0.08 -1.45 10.03 22.22 0.22 -1.23 16
7 C -0.13 -2.93 9.54 22.54 0.21 -2.72 16
8 C -0.11 -3.11 5.87 -20.10 -0.12 -3.23 16
9 C 0.56 18.06 6.13 86.79 0.53 18.59 16
10 O -0.56 -21.53 13.47 -3.88 -0.05 -21.58 16
11 N -0.70 -21.06 3.59 -445.40 -1.60 -22.66 16
12 C 0.15 4.82 1.69 44.99 0.08 4.89 16
13 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16
14 C 0.15 5.24 5.10 86.38 0.44 5.68 16
15 N -0.76 -34.53 5.24 -343.44 -1.80 -36.33 16
16 C -0.23 -12.50 10.47 84.03 0.88 -11.62 16
17 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16
18 C -0.05 -3.16 5.50 84.86 0.47 -2.69 16
19 N -0.98 -61.88 13.97 21.65 0.30 -61.58 16
20 Si 0.94 46.29 27.74 68.60 1.90 48.19 16
21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16
22 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16
23 H -0.27 -12.98 6.52 99.48 0.65 -12.34 16
24 C -0.07 -1.75 0.62 -52.18 -0.03 -1.79 16
25 C -0.12 -3.23 7.00 71.98 0.50 -2.73 16
26 C -0.14 -3.24 8.12 71.98 0.58 -2.66 16
27 C -0.14 -3.01 7.97 71.98 0.57 -2.44 16
28 C -0.12 -3.32 9.53 22.63 0.22 -3.10 16
29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16
31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.08 0.74 7.66 -2.39 -0.02 0.72 16
33 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16
34 H 0.16 1.78 6.28 -2.91 -0.02 1.76 16
35 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16
36 H 0.14 2.85 6.40 -2.91 -0.02 2.84 16
37 H 0.41 11.16 6.63 -92.71 -0.61 10.54 16
38 H 0.05 1.78 6.17 -2.39 -0.01 1.76 16
39 H 0.05 1.65 6.71 -2.39 -0.02 1.64 16
40 H 0.36 16.62 5.20 -92.71 -0.48 16.14 16
41 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16
42 H 0.04 1.28 7.53 -2.39 -0.02 1.26 16
43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
44 H 0.04 1.16 5.77 -2.39 -0.01 1.15 16
45 H 0.06 1.46 6.54 -2.39 -0.02 1.44 16
46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
48 H 0.05 1.16 7.60 -2.38 -0.02 1.14 16
49 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
50 H 0.06 1.38 6.32 -2.38 -0.02 1.37 16
51 H 0.12 3.87 7.65 -2.91 -0.02 3.84 16
Total: -1.00 -72.87 397.01 3.65 -69.22
By element:
Atomic # 1 Polarization: 38.23 SS G_CDS: -0.21 Total: 38.02 kcal
Atomic # 6 Polarization: -11.04 SS G_CDS: 6.05 Total: -4.99 kcal
Atomic # 7 Polarization: -117.48 SS G_CDS: -3.10 Total: -120.57 kcal
Atomic # 8 Polarization: -28.87 SS G_CDS: -0.99 Total: -29.86 kcal
Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.19 kcal
Total: -72.87 3.65 -69.22 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001279009031.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.474 kcal
(2) G-P(sol) polarization free energy of solvation -72.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.396 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds