Wall clock time and date at job start Tue Mar 31 2020 18:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46734 * 2 1 4 4 O 1.42901 * 109.47480 * 120.00012 * 2 1 3 5 5 C 1.42901 * 113.99860 * 270.00453 * 4 2 1 6 6 C 1.50702 * 109.47187 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99491 * 269.72847 * 6 5 4 8 8 C 1.38236 * 119.99569 * 179.76564 * 7 6 5 9 9 C 1.38244 * 119.99950 * 0.50037 * 8 7 6 10 10 C 1.38231 * 119.99994 * 359.75028 * 9 8 7 11 11 C 1.38234 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.46991 * 240.00153 * 2 1 3 13 13 O 1.21279 * 119.99732 * 254.94165 * 12 2 1 14 14 N 1.34775 * 119.99974 * 74.94789 * 12 2 1 15 15 C 1.46503 * 120.00078 * 5.46191 * 14 12 2 16 16 C 1.46500 * 120.00088 * 185.45821 * 14 12 2 17 17 C 1.53006 * 109.46792 * 89.99907 * 16 14 12 18 18 C 1.52998 * 109.46749 * 180.02562 * 17 16 14 19 19 N 1.46506 * 109.46990 * 180.02562 * 18 17 16 20 20 C 1.46501 * 120.00087 * 89.99881 * 19 18 17 21 21 C 1.36933 * 119.99868 * 269.99951 * 19 18 17 22 22 H 1.08000 * 120.00360 * 28.38666 * 21 19 18 23 23 C 1.38814 * 120.00322 * 208.38299 * 21 19 18 24 24 N 1.31624 * 119.99361 * 7.62597 * 23 21 19 25 25 Si 1.86794 * 120.00419 * 187.62879 * 23 21 19 26 26 H 1.48492 * 109.47284 * 59.99737 * 25 23 21 27 27 H 1.48504 * 109.47252 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46905 * 299.99594 * 25 23 21 29 29 H 1.09004 * 109.46729 * 175.19683 * 1 2 3 30 30 H 1.08998 * 109.47452 * 295.19328 * 1 2 3 31 31 H 1.09000 * 109.47422 * 55.19547 * 1 2 3 32 32 H 1.09001 * 109.46972 * 299.99349 * 5 4 2 33 33 H 1.08998 * 109.47288 * 59.99724 * 5 4 2 34 34 H 1.07991 * 120.00401 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.00347 * 180.22628 * 8 7 6 36 36 H 1.07996 * 119.99962 * 179.72442 * 9 8 7 37 37 H 1.07999 * 120.00146 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.00166 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.47483 * 84.73065 * 15 14 12 40 40 H 1.09006 * 109.46814 * 204.73046 * 15 14 12 41 41 H 1.09004 * 109.46769 * 324.72180 * 15 14 12 42 42 H 1.09000 * 109.47524 * 209.99996 * 16 14 12 43 43 H 1.08999 * 109.47006 * 330.00593 * 16 14 12 44 44 H 1.08997 * 109.46808 * 299.99931 * 17 16 14 45 45 H 1.08994 * 109.46857 * 60.00079 * 17 16 14 46 46 H 1.09000 * 109.47358 * 299.99960 * 18 17 16 47 47 H 1.09001 * 109.47613 * 59.99932 * 18 17 16 48 48 H 1.08999 * 109.46656 * 94.25332 * 20 19 18 49 49 H 1.09002 * 109.46824 * 214.25149 * 20 19 18 50 50 H 1.08999 * 109.46832 * 334.25200 * 20 19 18 51 51 H 0.97007 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7003 -0.6283 3.4614 7 6 1.8010 -1.1949 4.3452 8 6 2.2597 -1.9431 5.4132 9 6 3.6181 -2.1161 5.6032 10 6 4.5175 -1.5452 4.7224 11 6 4.0586 -0.8018 3.6511 12 6 2.0323 -0.7104 -1.2305 13 8 2.4917 -1.8291 -1.1397 14 7 1.9711 -0.1024 -2.4318 15 6 1.5286 1.2910 -2.5258 16 6 2.3472 -0.8349 -3.6435 17 6 1.1142 -1.5335 -4.2203 18 6 1.5071 -2.2990 -5.4854 19 7 0.3264 -2.9675 -6.0382 20 6 -0.5177 -2.2746 -7.0148 21 6 0.0118 -4.2399 -5.6419 22 1 0.2964 -4.5854 -4.6591 23 6 -0.6732 -5.0859 -6.5034 24 7 -0.8884 -4.7219 -7.7499 25 14 -1.2894 -6.7405 -5.8939 26 1 -2.2352 -6.5325 -4.7683 27 1 -1.9832 -7.4484 -6.9997 28 1 -0.1389 -7.5566 -5.4293 29 1 -0.3633 -1.0241 -0.0861 30 1 -0.3634 0.4374 0.9299 31 1 -0.3634 0.5866 -0.8438 32 1 2.9320 0.9514 2.0450 33 1 1.2538 0.6546 2.5588 34 1 0.7401 -1.0558 4.1994 35 1 1.5571 -2.3889 6.1017 36 1 3.9766 -2.6970 6.4402 37 1 5.5786 -1.6800 4.8710 38 1 4.7612 -0.3553 2.9631 39 1 2.3748 1.9540 -2.3456 40 1 1.1263 1.4780 -3.5215 41 1 0.7554 1.4778 -1.7806 42 1 2.7477 -0.1381 -4.3798 43 1 3.1047 -1.5791 -3.3977 44 1 0.7138 -2.2304 -3.4840 45 1 0.3567 -0.7894 -4.4660 46 1 1.9078 -1.6025 -6.2219 47 1 2.2645 -3.0432 -5.2394 48 1 -0.2014 -2.5423 -8.0229 49 1 -1.5572 -2.5687 -6.8699 50 1 -0.4223 -1.1975 -6.8780 51 1 -1.3667 -5.3132 -8.3521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280865640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:13 Heat of formation + Delta-G solvation = -28.328183 kcal Electronic energy + Delta-G solvation = -28413.974033 eV Core-core repulsion = 24507.550903 eV Total energy + Delta-G solvation = -3906.423131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.25351 -39.50763 -37.74776 -36.15476 -35.27629 -33.05112 -32.18199 -31.17591 -31.04845 -29.89920 -27.03801 -26.50480 -25.96284 -25.54760 -23.67470 -22.85691 -21.94644 -21.62536 -20.17754 -19.27022 -17.72192 -17.06961 -16.85850 -16.56875 -16.03607 -15.68468 -15.51991 -15.36337 -14.76401 -14.67588 -14.26687 -13.95364 -13.73133 -13.59823 -13.39893 -13.13782 -13.08605 -12.87450 -12.79981 -12.63477 -12.50978 -12.34350 -12.01242 -11.72243 -11.60876 -11.31466 -11.21081 -11.18447 -10.88058 -10.75157 -10.65518 -10.40442 -10.12894 -10.11995 -9.82160 -9.67048 -9.47022 -9.18214 -9.10651 -8.63609 -8.41943 -6.57243 -5.64234 -3.15812 0.97069 1.14047 2.64710 2.73114 3.39676 3.45834 3.49245 3.52254 3.86259 4.32524 4.49205 4.51580 4.57767 4.66364 4.72667 4.79047 4.85474 4.90428 4.96901 4.99055 5.17222 5.23988 5.30576 5.35050 5.36406 5.47772 5.49085 5.51992 5.55089 5.67810 5.75851 5.85210 5.94637 6.07655 6.13173 6.16361 6.22185 6.22976 6.30478 6.52604 6.62906 6.70299 6.80519 6.84946 6.91587 7.09751 7.40596 7.42517 7.80067 7.90437 8.25230 8.52786 9.34114 9.95845 10.47250 11.40175 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002226 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.792691 B =12573.983859 C =13875.778722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.073 3.927 3 H 0.081 0.919 4 O -0.349 6.349 5 C 0.100 3.900 6 C -0.089 4.089 7 C -0.097 4.097 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.096 4.096 12 C 0.513 3.487 13 O -0.511 6.511 14 N -0.614 5.614 15 C 0.070 3.930 16 C 0.117 3.883 17 C -0.151 4.151 18 C 0.155 3.845 19 N -0.602 5.602 20 C 0.164 3.836 21 C -0.253 4.253 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.910 5.910 25 Si 0.905 3.095 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.034 0.966 47 H 0.048 0.952 48 H 0.031 0.969 49 H 0.037 0.963 50 H -0.005 1.005 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 17.635 22.997 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 H 0.099 0.901 4 O -0.267 6.267 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.115 4.115 8 C -0.142 4.142 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.114 4.114 12 C 0.299 3.701 13 O -0.385 6.385 14 N -0.350 5.350 15 C -0.073 4.073 16 C -0.005 4.005 17 C -0.192 4.192 18 C 0.027 3.973 19 N -0.325 5.325 20 C 0.019 3.981 21 C -0.383 4.383 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.555 5.555 25 Si 0.734 3.266 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.208 1.208 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.049 0.951 49 H 0.056 0.944 50 H 0.013 0.987 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.164 16.726 22.883 29.236 hybrid contribution -0.587 -0.559 0.208 0.837 sum 6.577 16.167 23.091 28.945 Atomic orbital electron populations 1.22279 0.93346 1.04433 1.02963 1.21930 0.95330 0.95931 0.85699 0.90116 1.88172 1.86436 1.33664 1.18456 1.21424 0.99618 0.91720 0.84889 1.19547 0.93718 1.00135 0.95543 1.21075 0.99508 0.96530 0.94397 1.21160 0.95804 0.99113 0.98159 1.21213 0.93461 0.99282 0.99317 1.21157 0.99837 0.98049 0.95153 1.21082 0.94905 0.98143 0.97280 1.20283 0.79060 0.86771 0.84028 1.90747 1.43406 1.18886 1.85428 1.47864 1.67191 1.13117 1.06805 1.21946 0.99639 0.81862 1.03838 1.21619 0.98713 0.95958 0.84257 1.22612 0.96490 0.99583 1.00507 1.20640 0.90122 0.94651 0.91888 1.43821 1.25553 1.13632 1.49508 1.20769 0.94742 0.89528 0.93056 1.19133 1.33568 0.88537 0.97044 0.91750 1.25167 1.01549 0.97803 0.94976 1.70026 1.44765 1.36788 1.03921 0.86337 0.78729 0.84004 0.77496 1.21058 1.21651 1.20811 0.90705 0.91231 0.90505 0.92348 0.92207 0.85884 0.85870 0.86010 0.85875 0.85922 0.92687 0.90271 0.91166 0.90824 0.89894 0.91910 0.92914 0.94787 0.93385 0.95114 0.94419 0.98675 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.27 37.16 0.34 -1.33 16 2 C 0.07 0.82 2.30 -27.88 -0.06 0.75 16 3 H 0.08 0.64 7.00 -51.93 -0.36 0.28 16 4 O -0.35 -4.62 9.55 -54.68 -0.52 -5.14 16 5 C 0.10 0.93 5.87 36.01 0.21 1.14 16 6 C -0.09 -0.91 5.51 -104.62 -0.58 -1.48 16 7 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 8 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 9 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 10 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 11 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 12 C 0.51 7.81 6.96 -10.99 -0.08 7.74 16 13 O -0.51 -10.41 16.12 -13.90 -0.22 -10.64 16 14 N -0.61 -8.02 2.87 -181.57 -0.52 -8.54 16 15 C 0.07 0.59 9.87 59.85 0.59 1.18 16 16 C 0.12 1.73 5.43 -4.04 -0.02 1.71 16 17 C -0.15 -2.76 5.86 -26.73 -0.16 -2.92 16 18 C 0.16 3.31 5.65 -4.04 -0.02 3.29 16 19 N -0.60 -15.87 2.91 -181.11 -0.53 -16.40 16 20 C 0.16 4.15 8.98 59.85 0.54 4.69 16 21 C -0.25 -7.34 9.62 -15.06 -0.14 -7.48 16 22 H 0.06 1.87 7.84 -52.49 -0.41 1.46 16 23 C 0.00 0.09 5.20 -17.43 -0.09 0.00 16 24 N -0.91 -27.45 10.77 55.49 0.60 -26.86 16 25 Si 0.90 22.89 29.56 -169.99 -5.02 17.86 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 31 H 0.08 0.63 6.05 -51.93 -0.31 0.32 16 32 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 33 H 0.06 0.43 7.73 -51.93 -0.40 0.03 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.62 8.03 -51.93 -0.42 0.21 16 41 H 0.07 0.47 4.70 -51.93 -0.24 0.22 16 42 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 43 H 0.08 1.38 7.35 -51.93 -0.38 1.00 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 47 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 48 H 0.03 0.84 7.30 -51.93 -0.38 0.46 16 49 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 50 H -0.01 -0.12 8.04 -51.93 -0.42 -0.53 16 51 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 415.86 15.07 6.27 6.27 Total: -1.00 -36.54 415.86 -10.12 -46.67 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -8.74 Total: -3.59 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.43 Total: 0.37 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.45 Total: -51.80 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.75 Total: -15.77 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.54 -10.12 -46.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280865640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.338 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds