Wall clock time and date at job start Tue Mar 31 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46734 * 2 1 4 4 O 1.42901 * 109.47480 * 120.00012 * 2 1 3 5 5 C 1.42901 * 113.99860 * 270.00453 * 4 2 1 6 6 C 1.50702 * 109.47187 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99491 * 269.72847 * 6 5 4 8 8 C 1.38236 * 119.99569 * 179.76564 * 7 6 5 9 9 C 1.38244 * 119.99950 * 0.50037 * 8 7 6 10 10 C 1.38231 * 119.99994 * 359.75028 * 9 8 7 11 11 C 1.38234 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.46991 * 240.00153 * 2 1 3 13 13 O 1.21279 * 119.99732 * 254.94165 * 12 2 1 14 14 N 1.34775 * 119.99974 * 74.94789 * 12 2 1 15 15 C 1.46503 * 120.00078 * 5.46191 * 14 12 2 16 16 C 1.46500 * 120.00088 * 185.45821 * 14 12 2 17 17 C 1.53006 * 109.46792 * 89.99907 * 16 14 12 18 18 C 1.52998 * 109.46749 * 180.02562 * 17 16 14 19 19 N 1.46506 * 109.46990 * 180.02562 * 18 17 16 20 20 C 1.46501 * 120.00087 * 89.99881 * 19 18 17 21 21 C 1.36933 * 119.99868 * 269.99951 * 19 18 17 22 22 H 1.08000 * 120.00360 * 28.38666 * 21 19 18 23 23 C 1.38814 * 120.00322 * 208.38299 * 21 19 18 24 24 N 1.31624 * 119.99361 * 7.62597 * 23 21 19 25 25 Si 1.86794 * 120.00419 * 187.62879 * 23 21 19 26 26 H 1.48492 * 109.47284 * 59.99737 * 25 23 21 27 27 H 1.48504 * 109.47252 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46905 * 299.99594 * 25 23 21 29 29 H 1.09004 * 109.46729 * 175.19683 * 1 2 3 30 30 H 1.08998 * 109.47452 * 295.19328 * 1 2 3 31 31 H 1.09000 * 109.47422 * 55.19547 * 1 2 3 32 32 H 1.09001 * 109.46972 * 299.99349 * 5 4 2 33 33 H 1.08998 * 109.47288 * 59.99724 * 5 4 2 34 34 H 1.07991 * 120.00401 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.00347 * 180.22628 * 8 7 6 36 36 H 1.07996 * 119.99962 * 179.72442 * 9 8 7 37 37 H 1.07999 * 120.00146 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.00166 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.47483 * 84.73065 * 15 14 12 40 40 H 1.09006 * 109.46814 * 204.73046 * 15 14 12 41 41 H 1.09004 * 109.46769 * 324.72180 * 15 14 12 42 42 H 1.09000 * 109.47524 * 209.99996 * 16 14 12 43 43 H 1.08999 * 109.47006 * 330.00593 * 16 14 12 44 44 H 1.08997 * 109.46808 * 299.99931 * 17 16 14 45 45 H 1.08994 * 109.46857 * 60.00079 * 17 16 14 46 46 H 1.09000 * 109.47358 * 299.99960 * 18 17 16 47 47 H 1.09001 * 109.47613 * 59.99932 * 18 17 16 48 48 H 1.08999 * 109.46656 * 94.25332 * 20 19 18 49 49 H 1.09002 * 109.46824 * 214.25149 * 20 19 18 50 50 H 1.08999 * 109.46832 * 334.25200 * 20 19 18 51 51 H 0.97007 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7003 -0.6283 3.4614 7 6 1.8010 -1.1949 4.3452 8 6 2.2597 -1.9431 5.4132 9 6 3.6181 -2.1161 5.6032 10 6 4.5175 -1.5452 4.7224 11 6 4.0586 -0.8018 3.6511 12 6 2.0323 -0.7104 -1.2305 13 8 2.4917 -1.8291 -1.1397 14 7 1.9711 -0.1024 -2.4318 15 6 1.5286 1.2910 -2.5258 16 6 2.3472 -0.8349 -3.6435 17 6 1.1142 -1.5335 -4.2203 18 6 1.5071 -2.2990 -5.4854 19 7 0.3264 -2.9675 -6.0382 20 6 -0.5177 -2.2746 -7.0148 21 6 0.0118 -4.2399 -5.6419 22 1 0.2964 -4.5854 -4.6591 23 6 -0.6732 -5.0859 -6.5034 24 7 -0.8884 -4.7219 -7.7499 25 14 -1.2894 -6.7405 -5.8939 26 1 -2.2352 -6.5325 -4.7683 27 1 -1.9832 -7.4484 -6.9997 28 1 -0.1389 -7.5566 -5.4293 29 1 -0.3633 -1.0241 -0.0861 30 1 -0.3634 0.4374 0.9299 31 1 -0.3634 0.5866 -0.8438 32 1 2.9320 0.9514 2.0450 33 1 1.2538 0.6546 2.5588 34 1 0.7401 -1.0558 4.1994 35 1 1.5571 -2.3889 6.1017 36 1 3.9766 -2.6970 6.4402 37 1 5.5786 -1.6800 4.8710 38 1 4.7612 -0.3553 2.9631 39 1 2.3748 1.9540 -2.3456 40 1 1.1263 1.4780 -3.5215 41 1 0.7554 1.4778 -1.7806 42 1 2.7477 -0.1381 -4.3798 43 1 3.1047 -1.5791 -3.3977 44 1 0.7138 -2.2304 -3.4840 45 1 0.3567 -0.7894 -4.4660 46 1 1.9078 -1.6025 -6.2219 47 1 2.2645 -3.0432 -5.2394 48 1 -0.2014 -2.5423 -8.0229 49 1 -1.5572 -2.5687 -6.8699 50 1 -0.4223 -1.1975 -6.8780 51 1 -1.3667 -5.3132 -8.3521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280865640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:12 Heat of formation + Delta-G solvation = -49.592129 kcal Electronic energy + Delta-G solvation = -28414.896107 eV Core-core repulsion = 24507.550903 eV Total energy + Delta-G solvation = -3907.345205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28259 -40.22063 -38.64816 -37.84160 -36.71308 -34.33864 -33.43265 -32.29487 -31.81603 -31.30597 -28.08453 -27.85554 -27.33404 -26.92730 -24.92522 -23.51709 -23.39883 -22.28646 -21.98659 -20.31950 -18.80263 -18.52361 -17.97115 -17.60292 -17.05035 -16.81194 -16.58101 -16.42035 -16.10063 -15.80566 -15.48195 -15.40344 -14.76975 -14.61291 -14.54481 -14.41486 -14.28850 -14.01279 -13.83013 -13.53852 -13.45211 -13.28642 -13.17273 -12.99364 -12.80281 -12.68779 -12.57714 -12.50835 -12.42112 -12.23346 -12.15202 -11.94601 -11.90676 -11.84346 -11.42272 -10.99948 -10.68756 -10.50473 -9.84595 -9.78717 -9.69366 -8.69840 -7.85716 -5.40330 0.29795 0.47619 1.41423 1.43621 1.50724 1.53131 1.79951 2.47331 2.65483 3.13838 3.26529 3.45146 3.70558 3.78785 3.86464 3.95046 4.04531 4.06968 4.12591 4.24120 4.26259 4.33458 4.36382 4.37449 4.52057 4.58935 4.60505 4.62041 4.72702 4.73325 4.75202 4.77278 4.87026 4.92501 4.93856 5.05437 5.12714 5.20924 5.24312 5.26956 5.47599 5.51982 5.57010 5.58420 5.61384 5.63514 5.70753 6.03414 6.08958 6.33968 6.40911 7.14724 7.15818 7.86392 8.29871 9.15700 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002226 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.792691 B =12573.983859 C =13875.778722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 H 0.123 0.877 4 O -0.386 6.386 5 C 0.097 3.903 6 C -0.110 4.110 7 C -0.112 4.112 8 C -0.134 4.134 9 C -0.122 4.122 10 C -0.134 4.134 11 C -0.115 4.115 12 C 0.500 3.500 13 O -0.579 6.579 14 N -0.611 5.611 15 C 0.060 3.940 16 C 0.124 3.876 17 C -0.128 4.128 18 C 0.152 3.848 19 N -0.622 5.622 20 C 0.177 3.823 21 C -0.266 4.266 22 H 0.053 0.947 23 C -0.048 4.048 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.278 1.278 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.057 0.943 44 H 0.019 0.981 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.030 0.970 48 H 0.007 0.993 49 H 0.010 0.990 50 H 0.036 0.964 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.873 20.157 24.188 32.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 H 0.141 0.859 4 O -0.306 6.306 5 C 0.022 3.978 6 C -0.111 4.111 7 C -0.130 4.130 8 C -0.151 4.151 9 C -0.140 4.140 10 C -0.152 4.152 11 C -0.133 4.133 12 C 0.289 3.711 13 O -0.458 6.458 14 N -0.344 5.344 15 C -0.081 4.081 16 C 0.001 3.999 17 C -0.170 4.170 18 C 0.025 3.975 19 N -0.345 5.345 20 C 0.033 3.967 21 C -0.397 4.397 22 H 0.071 0.929 23 C -0.243 4.243 24 N -0.581 5.581 25 Si 0.794 3.206 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.204 1.204 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.025 0.975 49 H 0.029 0.971 50 H 0.055 0.945 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.069 19.324 24.087 31.679 hybrid contribution -0.505 -1.284 -0.129 1.386 sum 6.564 18.040 23.958 30.700 Atomic orbital electron populations 1.22282 0.92172 1.02812 1.05269 1.22016 0.95968 0.96914 0.83413 0.85923 1.88135 1.86801 1.35867 1.19766 1.21626 1.01285 0.91435 0.83489 1.19827 0.94106 1.00891 0.96227 1.21337 1.00124 0.96834 0.94747 1.21490 0.96503 0.98860 0.98291 1.21554 0.93454 0.99162 0.99833 1.21465 1.01015 0.97762 0.94969 1.21320 0.95198 0.98836 0.97965 1.21209 0.77961 0.86212 0.85763 1.90708 1.46591 1.21938 1.86579 1.47962 1.66171 1.14788 1.05502 1.22328 1.01458 0.79006 1.05294 1.21411 0.96217 0.96444 0.85860 1.22282 0.98183 0.98676 0.97825 1.20806 0.88297 0.94762 0.93586 1.44091 1.27205 1.13396 1.49858 1.20546 0.92937 0.91650 0.91613 1.19303 1.33635 0.90028 0.96726 0.92937 1.25886 1.02068 1.01133 0.95247 1.70173 1.45419 1.37775 1.04723 0.85374 0.78182 0.80011 0.77076 1.20602 1.21127 1.20436 0.94226 0.88474 0.88641 0.90621 0.89939 0.84878 0.83981 0.83843 0.84167 0.85456 0.89912 0.89243 0.89144 0.87036 0.92467 0.96180 0.91679 0.91920 0.95101 0.97499 0.97100 0.94526 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.27 71.98 0.67 -2.26 16 2 C 0.08 1.62 2.30 29.85 0.07 1.68 16 3 H 0.12 1.47 7.00 -2.39 -0.02 1.45 16 4 O -0.39 -10.02 9.55 -130.38 -1.24 -11.26 16 5 C 0.10 1.65 5.87 71.24 0.42 2.07 16 6 C -0.11 -2.19 5.51 -19.87 -0.11 -2.30 16 7 C -0.11 -2.06 9.70 22.27 0.22 -1.85 16 8 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 9 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 10 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 11 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 12 C 0.50 15.14 6.96 87.66 0.61 15.75 16 13 O -0.58 -24.83 16.12 15.57 0.25 -24.58 16 14 N -0.61 -14.86 2.87 -846.74 -2.43 -17.29 16 15 C 0.06 0.75 9.87 127.77 1.26 2.01 16 16 C 0.12 3.53 5.43 86.38 0.47 4.00 16 17 C -0.13 -4.67 5.86 30.60 0.18 -4.49 16 18 C 0.15 6.47 5.65 86.38 0.49 6.95 16 19 N -0.62 -33.06 2.91 -726.92 -2.12 -35.17 16 20 C 0.18 8.96 8.98 127.77 1.15 10.11 16 21 C -0.27 -15.82 9.62 84.03 0.81 -15.01 16 22 H 0.05 3.17 7.84 -2.91 -0.02 3.15 16 23 C -0.05 -2.84 5.20 84.86 0.44 -2.40 16 24 N -0.93 -57.28 10.77 21.65 0.23 -57.05 16 25 Si 0.97 47.83 29.56 68.60 2.03 49.86 16 26 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 29 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.10 1.15 7.79 -2.39 -0.02 1.13 16 31 H 0.10 1.26 6.05 -2.39 -0.01 1.24 16 32 H 0.08 0.97 8.03 -2.39 -0.02 0.95 16 33 H 0.08 0.97 7.73 -2.39 -0.02 0.95 16 34 H 0.13 2.01 8.06 -2.92 -0.02 1.99 16 35 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.99 8.03 -2.38 -0.02 0.97 16 41 H 0.09 0.78 4.70 -2.39 -0.01 0.77 16 42 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 43 H 0.06 1.95 7.35 -2.39 -0.02 1.93 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 47 H 0.03 1.40 8.04 -2.39 -0.02 1.38 16 48 H 0.01 0.37 7.30 -2.39 -0.02 0.35 16 49 H 0.01 0.57 7.50 -2.39 -0.02 0.55 16 50 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 51 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -84.32 415.86 5.16 -79.17 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.88 Total: 9.75 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 7.55 Total: 6.58 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.32 Total: -109.51 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.99 Total: -35.84 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -84.32 5.16 -79.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280865640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.573 kcal (2) G-P(sol) polarization free energy of solvation -84.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds