Wall clock time and date at job start Tue Mar 31 2020 17:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46665 * 2 1 4 4 C 1.50704 * 109.47207 * 119.99649 * 2 1 3 5 5 C 1.38282 * 119.97081 * 299.98168 * 4 2 1 6 6 C 1.38252 * 120.10781 * 180.02562 * 5 4 2 7 7 C 1.38161 * 120.05393 * 359.67669 * 6 5 4 8 8 C 1.38714 * 119.94669 * 0.62477 * 7 6 5 9 9 O 1.35896 * 120.05914 * 179.67602 * 8 7 6 10 10 C 1.42901 * 116.99749 * 359.72401 * 9 8 7 11 11 C 1.50711 * 109.46979 * 180.02562 * 10 9 8 12 12 O 1.21272 * 119.99887 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99822 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46898 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.47133 * 294.99906 * 15 14 13 17 17 C 1.52998 * 109.46893 * 175.00329 * 15 14 13 18 18 N 1.46498 * 109.47138 * 55.00256 * 15 14 13 19 19 C 1.46498 * 120.00113 * 59.99998 * 18 15 14 20 20 C 1.36939 * 120.00059 * 240.00023 * 18 15 14 21 21 H 1.08000 * 119.99934 * 20.37424 * 20 18 15 22 22 C 1.38815 * 120.00192 * 200.37845 * 20 18 15 23 23 N 1.31616 * 120.00015 * 14.98517 * 22 20 18 24 24 Si 1.86795 * 119.99966 * 194.98745 * 22 20 18 25 25 H 1.48504 * 109.47263 * 85.00274 * 24 22 20 26 26 H 1.48505 * 109.47303 * 204.99740 * 24 22 20 27 27 H 1.48503 * 109.47495 * 325.00222 * 24 22 20 28 28 C 1.38120 * 119.96799 * 120.00099 * 4 2 1 29 29 H 1.09009 * 109.46472 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47369 * 299.99654 * 1 2 3 31 31 H 1.08995 * 109.47348 * 60.00480 * 1 2 3 32 32 H 1.08996 * 109.47369 * 240.00346 * 2 1 3 33 33 H 1.08998 * 109.46773 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.46846 * 299.99827 * 3 2 1 35 35 H 1.08996 * 109.46944 * 60.00086 * 3 2 1 36 36 H 1.07997 * 119.94743 * 359.97438 * 5 4 2 37 37 H 1.07994 * 119.97027 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.02734 * 180.29403 * 7 6 5 39 39 H 1.09001 * 109.47810 * 60.00200 * 10 9 8 40 40 H 1.08998 * 109.47096 * 299.99754 * 10 9 8 41 41 H 0.96999 * 119.99719 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.47112 * 60.00435 * 14 13 11 43 43 H 1.08998 * 109.47122 * 300.00330 * 14 13 11 44 44 H 1.09003 * 109.46886 * 299.99728 * 17 15 14 45 45 H 1.09002 * 109.46852 * 180.02562 * 17 15 14 46 46 H 1.08993 * 109.47814 * 60.00063 * 17 15 14 47 47 H 1.08998 * 109.47547 * 95.10946 * 19 18 15 48 48 H 1.09003 * 109.47342 * 215.10909 * 19 18 15 49 49 H 1.09001 * 109.47010 * 335.10162 * 19 18 15 50 50 H 0.97001 * 120.00160 * 180.02562 * 23 22 20 51 51 H 1.08002 * 120.03065 * 0.02693 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6983 -0.2371 2.4862 6 6 2.1580 -0.8862 3.6169 7 6 2.9472 -2.0137 3.4948 8 6 3.2889 -2.4868 2.2364 9 8 4.0705 -3.5917 2.1137 10 6 4.5099 -4.2130 3.3232 11 6 5.3594 -5.4129 2.9916 12 8 5.5675 -5.7072 1.8337 13 7 5.8878 -6.1589 3.9820 14 6 6.7131 -7.3256 3.6597 15 6 7.1837 -7.9908 4.9546 16 1 7.8436 -7.3108 5.4934 17 6 7.9403 -9.2780 4.6209 18 7 6.0230 -8.3091 5.7899 19 6 4.9835 -9.2104 5.2866 20 6 5.9097 -7.7643 7.0411 21 1 6.4654 -6.8735 7.2945 22 6 5.0808 -8.3568 7.9838 23 7 4.6381 -9.5816 7.7936 24 14 4.5937 -7.4160 9.5222 25 1 3.4132 -6.5642 9.2285 26 1 4.2545 -8.3761 10.6031 27 1 5.7259 -6.5595 9.9581 28 6 2.8265 -1.8333 1.1031 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.0779 0.6415 2.5837 37 1 1.8961 -0.5145 4.5964 38 1 3.3022 -2.5232 4.3785 39 1 3.6440 -4.5300 3.9044 40 1 5.0971 -3.5020 3.9043 41 1 5.7210 -5.9237 4.9081 42 1 7.5788 -7.0088 3.0781 43 1 6.1258 -8.0368 3.0789 44 1 7.2805 -9.9581 4.0822 45 1 8.2752 -9.7522 5.5435 46 1 8.8039 -9.0413 3.9995 47 1 5.1821 -10.2242 5.6340 48 1 4.0106 -8.8844 5.6546 49 1 4.9840 -9.1930 4.1967 50 1 4.0585 -9.9956 8.4522 51 1 3.0877 -2.2020 0.1222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282388073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:29 Heat of formation + Delta-G solvation = -38.949777 kcal Electronic energy + Delta-G solvation = -28491.580841 eV Core-core repulsion = 24584.697123 eV Total energy + Delta-G solvation = -3906.883718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.49733 -39.33997 -37.99021 -36.69795 -35.11275 -33.84704 -32.14071 -31.04210 -29.63884 -29.37735 -28.37552 -27.44314 -26.08417 -25.34357 -23.39780 -23.01274 -22.75086 -20.52543 -19.98829 -19.32416 -17.91460 -17.09631 -16.90476 -16.33979 -16.32172 -15.67058 -15.43710 -15.28739 -15.04403 -14.43816 -14.23148 -13.98584 -13.72503 -13.68107 -13.61736 -12.98662 -12.84811 -12.72085 -12.66359 -12.43869 -12.26781 -12.22061 -11.98221 -11.59076 -11.51411 -11.48285 -11.13916 -11.06156 -11.02101 -10.88605 -10.82871 -10.79612 -10.46182 -10.34031 -9.94694 -9.84366 -9.57252 -8.98221 -8.66602 -8.61011 -8.29923 -6.89648 -5.81499 -3.26963 1.16094 1.31568 2.67456 2.83451 3.30030 3.36177 3.38829 3.59847 3.85395 4.39170 4.41981 4.55573 4.66711 4.88958 4.89293 4.93382 5.03991 5.05665 5.09463 5.17804 5.31014 5.31533 5.33584 5.34933 5.38132 5.51699 5.53626 5.62846 5.69534 5.86001 5.87381 5.91674 5.93368 6.05057 6.14225 6.17351 6.25493 6.29376 6.39235 6.43834 6.61205 6.70058 6.78981 6.80663 6.96780 7.28078 7.33379 7.64443 7.73294 7.89318 8.28408 8.50679 9.13308 9.77142 10.25954 11.22869 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.002368 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.988671 B =11819.015317 C =13210.413117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.040 4.040 5 C -0.157 4.157 6 C -0.076 4.076 7 C -0.215 4.215 8 C 0.136 3.864 9 O -0.289 6.289 10 C 0.041 3.959 11 C 0.511 3.489 12 O -0.535 6.535 13 N -0.701 5.701 14 C 0.109 3.891 15 C 0.158 3.842 16 H 0.069 0.931 17 C -0.157 4.157 18 N -0.594 5.594 19 C 0.164 3.836 20 C -0.263 4.263 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.280 1.280 28 C -0.149 4.149 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.411 0.589 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.042 0.958 47 H 0.029 0.971 48 H 0.041 0.959 49 H -0.001 1.001 50 H 0.253 0.747 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 18.294 -11.180 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.040 4.040 5 C -0.175 4.175 6 C -0.095 4.095 7 C -0.234 4.234 8 C 0.090 3.910 9 O -0.201 6.201 10 C -0.038 4.038 11 C 0.295 3.705 12 O -0.412 6.412 13 N -0.354 5.354 14 C -0.017 4.017 15 C 0.049 3.951 16 H 0.087 0.913 17 C -0.216 4.216 18 N -0.318 5.318 19 C 0.020 3.980 20 C -0.393 4.393 21 H 0.088 0.912 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.168 4.168 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.248 0.752 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.063 0.937 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.406 17.847 -12.058 21.984 hybrid contribution -0.434 0.336 1.792 1.874 sum -4.840 18.183 -10.266 21.434 Atomic orbital electron populations 1.21855 0.94127 1.02218 1.01912 1.20150 0.96080 0.96064 0.95322 1.21852 1.01370 0.94935 1.01915 1.19615 0.95486 0.93994 0.94903 1.20839 1.03293 1.01568 0.91782 1.20920 0.95649 0.94202 0.98685 1.21324 1.05075 1.00620 0.96359 1.19056 0.91148 0.86755 0.93999 1.86149 1.63617 1.39042 1.31323 1.22526 0.99543 0.94779 0.86933 1.19889 0.80643 0.83858 0.86079 1.90703 1.59954 1.70905 1.19659 1.45728 1.51291 1.28602 1.09732 1.21995 0.93760 0.86569 0.99367 1.20617 0.89749 0.94777 0.89982 0.91279 1.22187 0.99130 0.99084 1.01239 1.44024 1.18814 1.54812 1.14101 1.20734 0.91646 0.94175 0.91475 1.19198 1.25604 1.05882 0.88569 0.91219 1.24984 1.01448 0.95420 0.97620 1.70089 1.36989 1.11683 1.35825 0.86314 0.78559 0.78991 0.82863 1.21477 1.21792 1.20575 1.20313 1.02020 0.97062 0.97384 0.92377 0.92378 0.92343 0.90235 0.92427 0.92346 0.92385 0.86134 0.85774 0.85248 0.88774 0.89117 0.75226 0.92271 0.91929 0.93120 0.92158 0.93900 0.95295 0.94031 0.98232 0.93670 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.01 37.16 0.33 -0.65 16 2 C -0.06 -0.45 3.09 -91.76 -0.28 -0.73 16 3 C -0.14 -0.96 9.01 37.16 0.33 -0.62 16 4 C -0.04 -0.40 4.78 -104.65 -0.50 -0.90 16 5 C -0.16 -1.49 8.71 -39.56 -0.34 -1.83 16 6 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 7 C -0.22 -2.46 9.04 -39.43 -0.36 -2.82 16 8 C 0.14 1.80 6.69 -39.21 -0.26 1.54 16 9 O -0.29 -4.44 9.67 -39.32 -0.38 -4.82 16 10 C 0.04 0.55 5.22 36.01 0.19 0.74 16 11 C 0.51 8.64 7.91 -10.98 -0.09 8.56 16 12 O -0.54 -11.04 16.50 -14.35 -0.24 -11.28 16 13 N -0.70 -11.58 5.39 -60.29 -0.32 -11.91 16 14 C 0.11 1.87 4.94 -4.04 -0.02 1.85 16 15 C 0.16 2.92 2.87 -67.93 -0.19 2.72 16 16 H 0.07 1.26 7.85 -51.93 -0.41 0.85 16 17 C -0.16 -2.69 9.19 37.16 0.34 -2.35 16 18 N -0.59 -13.38 2.29 -173.48 -0.40 -13.77 16 19 C 0.16 3.85 8.00 59.85 0.48 4.32 16 20 C -0.26 -6.50 9.34 -15.06 -0.14 -6.64 16 21 H 0.07 1.64 7.81 -52.49 -0.41 1.24 16 22 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 23 N -0.90 -25.07 10.67 55.49 0.59 -24.47 16 24 Si 0.90 20.50 29.58 -169.99 -5.03 15.47 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 C -0.15 -1.79 9.61 -39.43 -0.38 -2.17 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.36 7.38 -51.93 -0.38 -0.02 16 36 H 0.12 0.91 7.09 -52.49 -0.37 0.54 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.31 6.30 -52.48 -0.33 0.98 16 39 H 0.09 1.14 7.65 -51.93 -0.40 0.75 16 40 H 0.09 0.99 7.67 -51.93 -0.40 0.59 16 41 H 0.41 6.64 7.89 -40.82 -0.32 6.32 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.17 6.86 -51.93 -0.36 0.81 16 44 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 48 H 0.04 1.05 7.21 -51.93 -0.37 0.68 16 49 H 0.00 -0.02 6.53 -51.93 -0.34 -0.36 16 50 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 51 H 0.13 1.49 7.94 -52.49 -0.42 1.08 16 LS Contribution 409.82 15.07 6.18 6.18 Total: -1.00 -30.67 409.82 -9.58 -40.24 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.60 Total: 4.49 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.38 Total: -0.12 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.13 Total: -50.16 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.62 Total: -16.10 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.67 -9.58 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282388073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.293 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds