Wall clock time and date at job start Tue Mar 31 2020 17:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46665 * 2 1 4 4 C 1.50704 * 109.47207 * 119.99649 * 2 1 3 5 5 C 1.38282 * 119.97081 * 299.98168 * 4 2 1 6 6 C 1.38252 * 120.10781 * 180.02562 * 5 4 2 7 7 C 1.38161 * 120.05393 * 359.67669 * 6 5 4 8 8 C 1.38714 * 119.94669 * 0.62477 * 7 6 5 9 9 O 1.35896 * 120.05914 * 179.67602 * 8 7 6 10 10 C 1.42901 * 116.99749 * 359.72401 * 9 8 7 11 11 C 1.50711 * 109.46979 * 180.02562 * 10 9 8 12 12 O 1.21272 * 119.99887 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99822 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46898 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.47133 * 294.99906 * 15 14 13 17 17 C 1.52998 * 109.46893 * 175.00329 * 15 14 13 18 18 N 1.46498 * 109.47138 * 55.00256 * 15 14 13 19 19 C 1.46498 * 120.00113 * 59.99998 * 18 15 14 20 20 C 1.36939 * 120.00059 * 240.00023 * 18 15 14 21 21 H 1.08000 * 119.99934 * 20.37424 * 20 18 15 22 22 C 1.38815 * 120.00192 * 200.37845 * 20 18 15 23 23 N 1.31616 * 120.00015 * 14.98517 * 22 20 18 24 24 Si 1.86795 * 119.99966 * 194.98745 * 22 20 18 25 25 H 1.48504 * 109.47263 * 85.00274 * 24 22 20 26 26 H 1.48505 * 109.47303 * 204.99740 * 24 22 20 27 27 H 1.48503 * 109.47495 * 325.00222 * 24 22 20 28 28 C 1.38120 * 119.96799 * 120.00099 * 4 2 1 29 29 H 1.09009 * 109.46472 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47369 * 299.99654 * 1 2 3 31 31 H 1.08995 * 109.47348 * 60.00480 * 1 2 3 32 32 H 1.08996 * 109.47369 * 240.00346 * 2 1 3 33 33 H 1.08998 * 109.46773 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.46846 * 299.99827 * 3 2 1 35 35 H 1.08996 * 109.46944 * 60.00086 * 3 2 1 36 36 H 1.07997 * 119.94743 * 359.97438 * 5 4 2 37 37 H 1.07994 * 119.97027 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.02734 * 180.29403 * 7 6 5 39 39 H 1.09001 * 109.47810 * 60.00200 * 10 9 8 40 40 H 1.08998 * 109.47096 * 299.99754 * 10 9 8 41 41 H 0.96999 * 119.99719 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.47112 * 60.00435 * 14 13 11 43 43 H 1.08998 * 109.47122 * 300.00330 * 14 13 11 44 44 H 1.09003 * 109.46886 * 299.99728 * 17 15 14 45 45 H 1.09002 * 109.46852 * 180.02562 * 17 15 14 46 46 H 1.08993 * 109.47814 * 60.00063 * 17 15 14 47 47 H 1.08998 * 109.47547 * 95.10946 * 19 18 15 48 48 H 1.09003 * 109.47342 * 215.10909 * 19 18 15 49 49 H 1.09001 * 109.47010 * 335.10162 * 19 18 15 50 50 H 0.97001 * 120.00160 * 180.02562 * 23 22 20 51 51 H 1.08002 * 120.03065 * 0.02693 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6983 -0.2371 2.4862 6 6 2.1580 -0.8862 3.6169 7 6 2.9472 -2.0137 3.4948 8 6 3.2889 -2.4868 2.2364 9 8 4.0705 -3.5917 2.1137 10 6 4.5099 -4.2130 3.3232 11 6 5.3594 -5.4129 2.9916 12 8 5.5675 -5.7072 1.8337 13 7 5.8878 -6.1589 3.9820 14 6 6.7131 -7.3256 3.6597 15 6 7.1837 -7.9908 4.9546 16 1 7.8436 -7.3108 5.4934 17 6 7.9403 -9.2780 4.6209 18 7 6.0230 -8.3091 5.7899 19 6 4.9835 -9.2104 5.2866 20 6 5.9097 -7.7643 7.0411 21 1 6.4654 -6.8735 7.2945 22 6 5.0808 -8.3568 7.9838 23 7 4.6381 -9.5816 7.7936 24 14 4.5937 -7.4160 9.5222 25 1 3.4132 -6.5642 9.2285 26 1 4.2545 -8.3761 10.6031 27 1 5.7259 -6.5595 9.9581 28 6 2.8265 -1.8333 1.1031 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.0779 0.6415 2.5837 37 1 1.8961 -0.5145 4.5964 38 1 3.3022 -2.5232 4.3785 39 1 3.6440 -4.5300 3.9044 40 1 5.0971 -3.5020 3.9043 41 1 5.7210 -5.9237 4.9081 42 1 7.5788 -7.0088 3.0781 43 1 6.1258 -8.0368 3.0789 44 1 7.2805 -9.9581 4.0822 45 1 8.2752 -9.7522 5.5435 46 1 8.8039 -9.0413 3.9995 47 1 5.1821 -10.2242 5.6340 48 1 4.0106 -8.8844 5.6546 49 1 4.9840 -9.1930 4.1967 50 1 4.0585 -9.9956 8.4522 51 1 3.0877 -2.2020 0.1222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282388073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:28 Heat of formation + Delta-G solvation = -54.757997 kcal Electronic energy + Delta-G solvation = -28492.266337 eV Core-core repulsion = 24584.697123 eV Total energy + Delta-G solvation = -3907.569213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48852 -40.55150 -39.00357 -38.28319 -35.81918 -35.45047 -33.80655 -31.94852 -31.20545 -30.33485 -29.49163 -28.01845 -27.95716 -26.65873 -24.92614 -24.07744 -23.57506 -21.63867 -21.13775 -20.75235 -18.90833 -18.78860 -18.16563 -17.49212 -17.29362 -17.03511 -16.71997 -16.47017 -16.00663 -15.85060 -15.46055 -15.18859 -14.70495 -14.60121 -14.46915 -14.43984 -14.35757 -13.94207 -13.81175 -13.61534 -13.28714 -13.07062 -12.94735 -12.93844 -12.85304 -12.65778 -12.52949 -12.36363 -12.27387 -12.18787 -12.08444 -11.84706 -11.76729 -11.68720 -11.51570 -11.50938 -10.95682 -10.59791 -10.03973 -9.78401 -9.17650 -8.80472 -7.77832 -5.24018 0.35692 0.47253 1.49408 1.51787 1.52855 1.59137 1.60334 2.54022 2.71017 2.78643 3.37035 3.58277 3.66845 3.73751 3.88387 3.96673 4.03256 4.06459 4.07478 4.21312 4.32971 4.35633 4.37170 4.43637 4.59520 4.59758 4.67191 4.71264 4.75525 4.84208 4.92379 5.01358 5.01825 5.04217 5.04390 5.21180 5.23352 5.30689 5.33912 5.35448 5.41232 5.41545 5.51979 5.53867 5.67599 5.69567 5.75622 5.83990 6.34292 6.35004 6.57018 7.15834 7.19695 7.89956 8.35408 9.25942 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.002368 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.988671 B =11819.015317 C =13210.413117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.040 4.040 5 C -0.155 4.155 6 C -0.079 4.079 7 C -0.223 4.223 8 C 0.111 3.889 9 O -0.318 6.318 10 C 0.046 3.954 11 C 0.511 3.489 12 O -0.577 6.577 13 N -0.697 5.697 14 C 0.117 3.883 15 C 0.157 3.843 16 H 0.079 0.921 17 C -0.150 4.150 18 N -0.603 5.603 19 C 0.184 3.816 20 C -0.254 4.254 21 H 0.085 0.915 22 C -0.055 4.055 23 N -0.940 5.940 24 Si 0.964 3.036 25 H -0.285 1.285 26 H -0.307 1.307 27 H -0.266 1.266 28 C -0.170 4.170 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.415 0.585 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.076 0.924 47 H 0.000 1.000 48 H 0.015 0.985 49 H 0.018 0.982 50 H 0.244 0.756 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 21.187 -10.840 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.198 4.198 4 C -0.040 4.040 5 C -0.173 4.173 6 C -0.096 4.096 7 C -0.241 4.241 8 C 0.066 3.934 9 O -0.232 6.232 10 C -0.032 4.032 11 C 0.296 3.704 12 O -0.457 6.457 13 N -0.349 5.349 14 C -0.008 4.008 15 C 0.050 3.950 16 H 0.097 0.903 17 C -0.209 4.209 18 N -0.326 5.326 19 C 0.039 3.961 20 C -0.384 4.384 21 H 0.103 0.897 22 C -0.250 4.250 23 N -0.587 5.587 24 Si 0.794 3.206 25 H -0.212 1.212 26 H -0.235 1.235 27 H -0.191 1.191 28 C -0.189 4.189 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.252 0.748 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.018 0.982 48 H 0.033 0.967 49 H 0.036 0.964 50 H 0.053 0.947 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.406 20.779 -11.721 24.260 hybrid contribution -0.395 -0.508 1.601 1.725 sum -4.801 20.271 -10.120 23.160 Atomic orbital electron populations 1.21842 0.93178 1.01851 1.02988 1.20211 0.96791 0.96563 0.94174 1.21835 1.00837 0.94112 1.02979 1.19898 0.94580 0.93241 0.96284 1.21174 1.02802 1.01976 0.91298 1.21279 0.94764 0.93505 1.00088 1.21523 1.05406 1.01268 0.95944 1.19297 0.92104 0.86807 0.95200 1.86092 1.64577 1.40182 1.32306 1.22535 0.99832 0.93962 0.86859 1.20445 0.80224 0.84377 0.85304 1.90680 1.61566 1.72171 1.21318 1.45706 1.51043 1.28257 1.09899 1.21827 0.94166 0.86511 0.98330 1.20785 0.88617 0.95635 0.89948 0.90269 1.22084 1.00051 0.97912 1.00891 1.44172 1.20024 1.54346 1.14047 1.20374 0.90778 0.92751 0.92189 1.19615 1.24232 1.05741 0.88842 0.89703 1.25721 1.02439 0.96177 1.00644 1.70266 1.38348 1.13371 1.36694 0.85319 0.78524 0.77511 0.79261 1.21154 1.23470 1.19059 1.20487 1.03162 0.98170 0.97050 0.93460 0.91650 0.90944 0.90632 0.93262 0.90981 0.91644 0.83720 0.83252 0.84080 0.87373 0.86199 0.74796 0.90632 0.93513 0.93898 0.93881 0.90469 0.98167 0.96651 0.96373 0.94661 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.01 71.98 0.65 -1.02 16 2 C -0.06 -0.84 3.09 -11.54 -0.04 -0.87 16 3 C -0.14 -1.59 9.01 71.98 0.65 -0.94 16 4 C -0.04 -0.76 4.78 -19.88 -0.10 -0.85 16 5 C -0.15 -2.57 8.71 22.28 0.19 -2.38 16 6 C -0.08 -1.37 10.04 22.25 0.22 -1.15 16 7 C -0.22 -4.76 9.04 22.37 0.20 -4.55 16 8 C 0.11 2.91 6.69 22.51 0.15 3.06 16 9 O -0.32 -9.82 9.67 -73.34 -0.71 -10.53 16 10 C 0.05 1.20 5.22 71.24 0.37 1.57 16 11 C 0.51 16.92 7.91 87.66 0.69 17.62 16 12 O -0.58 -23.94 16.50 16.03 0.26 -23.68 16 13 N -0.70 -22.11 5.39 -463.06 -2.49 -24.61 16 14 C 0.12 3.87 4.94 86.38 0.43 4.29 16 15 C 0.16 5.57 2.87 44.99 0.13 5.70 16 16 H 0.08 2.68 7.85 -2.39 -0.02 2.66 16 17 C -0.15 -4.93 9.19 71.98 0.66 -4.27 16 18 N -0.60 -26.76 2.29 -702.78 -1.61 -28.37 16 19 C 0.18 8.76 8.00 127.77 1.02 9.78 16 20 C -0.25 -12.28 9.34 84.03 0.79 -11.50 16 21 H 0.09 3.80 7.81 -2.91 -0.02 3.77 16 22 C -0.05 -2.85 5.06 84.86 0.43 -2.42 16 23 N -0.94 -53.40 10.67 21.65 0.23 -53.17 16 24 Si 0.96 41.95 29.58 68.60 2.03 43.98 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.31 -14.06 7.11 99.48 0.71 -13.36 16 27 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 28 C -0.17 -4.13 9.61 22.37 0.21 -3.92 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.68 7.39 -2.39 -0.02 0.66 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 1.12 7.87 -2.39 -0.02 1.10 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.64 7.38 -2.39 -0.02 0.62 16 36 H 0.15 1.67 7.09 -2.91 -0.02 1.65 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.14 2.55 6.30 -2.91 -0.02 2.53 16 39 H 0.11 2.48 7.65 -2.39 -0.02 2.47 16 40 H 0.12 2.37 7.67 -2.39 -0.02 2.35 16 41 H 0.41 12.65 7.89 -92.71 -0.73 11.91 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 43 H 0.05 1.71 6.86 -2.39 -0.02 1.69 16 44 H 0.04 1.46 7.67 -2.39 -0.02 1.44 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.00 0.00 7.40 -2.39 -0.02 -0.02 16 48 H 0.01 0.78 7.21 -2.39 -0.02 0.76 16 49 H 0.02 0.77 6.53 -2.39 -0.02 0.75 16 50 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 51 H 0.12 3.00 7.94 -2.91 -0.02 2.97 16 Total: -1.00 -67.28 409.82 4.56 -62.72 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.18 Total: 25.50 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.67 Total: 8.15 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.87 Total: -106.14 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.44 Total: -34.20 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.28 4.56 -62.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282388073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.960 kcal (2) G-P(sol) polarization free energy of solvation -67.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds