Wall clock time and date at job start Tue Mar 31 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47125 * 2 1 4 4 C 1.36938 * 120.00444 * 264.29004 * 3 2 1 5 5 H 1.07991 * 120.00389 * 188.63785 * 4 3 2 6 6 C 1.38822 * 119.99665 * 8.63967 * 4 3 2 7 7 N 1.31622 * 119.99635 * 24.60620 * 6 4 3 8 8 Si 1.86799 * 119.99788 * 204.60128 * 6 4 3 9 9 H 1.48499 * 109.46910 * 85.03129 * 8 6 4 10 10 H 1.48497 * 109.46814 * 205.02715 * 8 6 4 11 11 H 1.48495 * 109.46954 * 325.02850 * 8 6 4 12 12 C 1.46501 * 119.99582 * 84.29584 * 3 2 1 13 13 C 1.53005 * 109.46842 * 269.99691 * 12 3 2 14 14 C 1.53001 * 109.46710 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.46836 * 180.02562 * 14 13 12 16 16 C 1.34772 * 120.00354 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99739 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00629 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47370 * 179.97438 * 18 16 15 20 20 C 1.38283 * 119.94285 * 265.00029 * 19 18 16 21 21 C 1.38126 * 120.05464 * 180.02562 * 20 19 18 22 22 C 1.38753 * 119.94406 * 359.97438 * 21 20 19 23 23 O 1.35893 * 120.05769 * 180.02562 * 22 21 20 24 24 C 1.42901 * 116.99918 * 359.97438 * 23 22 21 25 25 C 1.38716 * 119.88798 * 0.27498 * 22 21 20 26 26 C 1.38171 * 119.94204 * 359.49170 * 25 22 21 27 27 C 1.50699 * 119.97124 * 180.23008 * 26 25 22 28 28 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46785 * 299.99989 * 1 2 3 30 30 H 1.09004 * 109.46981 * 59.99533 * 1 2 3 31 31 H 1.09001 * 109.46906 * 240.00544 * 2 1 3 32 32 H 1.08991 * 109.47136 * 120.00666 * 2 1 3 33 33 H 0.97000 * 119.99440 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47150 * 149.99933 * 12 3 2 35 35 H 1.08995 * 109.47119 * 29.99822 * 12 3 2 36 36 H 1.08993 * 109.47209 * 59.99864 * 13 12 3 37 37 H 1.09000 * 109.46724 * 299.99748 * 13 12 3 38 38 H 1.09001 * 109.47521 * 60.00096 * 14 13 12 39 39 H 1.08992 * 109.47139 * 299.99447 * 14 13 12 40 40 H 0.97008 * 120.00094 * 359.97438 * 15 14 13 41 41 H 1.09001 * 109.46927 * 59.99648 * 18 16 15 42 42 H 1.09005 * 109.46387 * 299.99964 * 18 16 15 43 43 H 1.07998 * 119.97368 * 359.97438 * 20 19 18 44 44 H 1.07996 * 120.02629 * 179.97438 * 21 20 19 45 45 H 1.08995 * 109.47052 * 60.00529 * 24 23 22 46 46 H 1.09001 * 109.47269 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.46915 * 299.99777 * 24 23 22 48 48 H 1.07998 * 120.03143 * 179.72848 * 25 22 21 49 49 H 1.09003 * 109.47621 * 270.25832 * 27 26 25 50 50 H 1.09008 * 109.47025 * 30.25713 * 27 26 25 51 51 H 1.09002 * 109.46997 * 150.25692 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9875 -1.1800 5 1 2.8470 2.9502 -1.1713 6 6 2.0731 1.3645 -2.3874 7 7 1.0958 0.4859 -2.4602 8 14 3.0770 1.7733 -3.9088 9 1 4.3045 0.9379 -3.9310 10 1 2.2688 1.4979 -5.1238 11 1 3.4555 3.2089 -3.8810 12 6 2.1436 2.1138 1.2625 13 6 0.8339 2.8473 1.5585 14 6 0.9649 3.6129 2.8767 15 7 -0.2893 4.3147 3.1605 16 6 -0.4072 5.0589 4.2779 17 8 0.5249 5.1472 5.0488 18 6 -1.6976 5.7805 4.5702 19 6 -1.5689 6.5337 5.8692 20 6 -2.0078 5.9578 7.0473 21 6 -1.8915 6.6463 8.2391 22 6 -1.3333 7.9164 8.2536 23 8 -1.2173 8.5956 9.4249 24 6 -1.6914 7.9417 10.6037 25 6 -0.8985 8.4940 7.0696 26 6 -1.0127 7.7992 5.8808 27 6 -0.5359 8.4239 4.5950 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 0.8971 0.0504 -3.3038 34 1 2.9553 2.8370 1.1840 35 1 2.3580 1.4131 2.0694 36 1 0.0222 2.1242 1.6370 37 1 0.6195 3.5480 0.7516 38 1 1.7766 4.3361 2.7978 39 1 1.1795 2.9125 3.6838 40 1 -1.0350 4.2438 2.5441 41 1 -2.5087 5.0567 4.6491 42 1 -1.9128 6.4810 3.7633 43 1 -2.4426 4.9693 7.0355 44 1 -2.2348 6.1963 9.1589 45 1 -1.1421 7.0115 10.7490 46 1 -1.5401 8.5916 11.4656 47 1 -2.7538 7.7234 10.4957 48 1 -0.4677 9.4843 7.0776 49 1 -1.3517 8.9849 4.1391 50 1 0.2955 9.0971 4.8045 51 1 -0.2064 7.6415 3.9112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316890973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:24 Heat of formation + Delta-G solvation = -34.374148 kcal Electronic energy + Delta-G solvation = -28123.747992 eV Core-core repulsion = 24217.062689 eV Total energy + Delta-G solvation = -3906.685303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.61997 -39.55199 -37.90785 -36.53488 -34.84512 -32.91559 -32.50083 -31.91546 -30.39437 -29.16004 -28.60813 -26.84814 -26.72555 -24.99057 -23.31395 -22.44182 -21.23980 -21.05822 -20.35965 -19.80067 -17.97867 -16.97084 -16.81167 -16.77120 -16.15616 -16.00155 -15.47285 -15.20195 -14.74676 -14.61641 -14.21641 -14.00293 -13.89630 -13.57358 -13.46763 -13.20973 -13.11750 -12.67176 -12.47687 -12.43677 -12.23815 -12.06964 -11.85765 -11.64574 -11.53457 -11.38626 -11.26014 -11.13143 -10.99392 -10.85807 -10.71206 -10.39376 -10.31427 -9.85528 -9.73365 -9.56634 -9.33359 -8.95353 -8.89259 -8.35280 -8.25581 -6.88649 -5.76180 -3.06925 1.15038 1.21951 2.71508 2.99526 3.24111 3.39858 3.47509 3.48230 3.65510 4.48975 4.51144 4.51921 4.66091 4.75124 4.81604 4.94367 4.98906 5.03104 5.10586 5.13947 5.27853 5.29488 5.35352 5.39906 5.44935 5.52262 5.56126 5.75110 5.80909 5.90654 5.92109 6.09935 6.12505 6.17676 6.23941 6.42139 6.45155 6.56760 6.58279 6.65350 6.76692 6.88607 6.93956 7.11740 7.15797 7.18805 7.62009 7.67822 7.78197 8.09825 8.32253 8.37660 9.25453 9.88698 10.33729 11.27769 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.001808 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.498648 B =15480.181288 C =15981.614281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.247 4.247 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.154 4.154 14 C 0.120 3.880 15 N -0.728 5.728 16 C 0.508 3.492 17 O -0.535 6.535 18 C -0.101 4.101 19 C -0.100 4.100 20 C -0.063 4.063 21 C -0.213 4.213 22 C 0.127 3.873 23 O -0.320 6.320 24 C 0.028 3.972 25 C -0.152 4.152 26 C -0.028 4.028 27 C -0.118 4.118 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.251 0.749 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.400 0.600 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.129 0.871 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 12.991 20.345 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.544 5.544 8 Si 0.726 3.274 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.195 4.195 14 C -0.004 4.004 15 N -0.380 5.380 16 C 0.294 3.706 17 O -0.412 6.412 18 C -0.141 4.141 19 C -0.100 4.100 20 C -0.082 4.082 21 C -0.232 4.232 22 C 0.083 3.917 23 O -0.233 6.233 24 C -0.067 4.067 25 C -0.171 4.171 26 C -0.028 4.028 27 C -0.175 4.175 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.234 0.766 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.074 0.926 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.147 0.853 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.111 13.133 20.775 26.212 hybrid contribution -0.191 -0.163 -0.949 0.981 sum -9.301 12.970 19.827 25.452 Atomic orbital electron populations 1.22415 0.99402 0.98120 1.00990 1.20797 0.92445 0.84531 0.98146 1.44254 1.75766 1.10222 1.01587 1.19289 1.31146 1.03583 0.83596 0.90901 1.24718 0.98020 1.00102 0.97294 1.70154 1.27349 1.32008 1.24843 0.86384 0.80364 0.77819 0.82787 1.21660 1.22027 1.20813 1.20670 0.93691 0.94159 0.88714 1.22708 1.02807 0.99687 0.94288 1.21487 0.85309 0.95322 0.98256 1.46201 1.17504 1.50240 1.24032 1.20538 0.89564 0.79291 0.81204 1.90720 1.40745 1.62367 1.47358 1.20654 0.96766 0.99829 0.96867 1.19036 1.02437 0.94492 0.94076 1.20745 0.97395 0.98724 0.91291 1.21121 1.07310 0.95434 0.99296 1.18971 0.95905 0.91021 0.85852 1.86051 1.79101 1.44022 1.14167 1.23040 0.99107 0.98817 0.85756 1.20205 1.05989 1.01342 0.89559 1.19475 0.95256 0.93329 0.94769 1.20859 1.01301 1.00987 0.94306 0.96353 0.96843 0.89161 0.89519 0.98003 0.93876 0.93570 0.94264 0.91635 0.91483 0.91942 0.92113 0.76587 0.88173 0.87944 0.85865 0.85610 0.92609 0.88343 0.92705 0.85298 0.90736 0.91129 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.58 37.16 0.36 -3.00 16 2 C 0.17 3.93 5.64 -4.04 -0.02 3.91 16 3 N -0.60 -14.31 2.54 -173.24 -0.44 -14.75 16 4 C -0.25 -6.51 9.70 -15.05 -0.15 -6.66 16 5 H 0.07 1.90 7.93 -52.49 -0.42 1.48 16 6 C 0.00 -0.12 4.91 -17.43 -0.09 -0.20 16 7 N -0.90 -24.57 8.54 55.49 0.47 -24.09 16 8 Si 0.90 21.30 29.62 -169.99 -5.04 16.26 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.16 3.06 5.71 -4.04 -0.02 3.03 16 13 C -0.15 -2.61 5.53 -26.73 -0.15 -2.75 16 14 C 0.12 1.77 5.67 -4.04 -0.02 1.75 16 15 N -0.73 -9.12 5.56 -60.30 -0.33 -9.45 16 16 C 0.51 6.67 7.04 -10.99 -0.08 6.60 16 17 O -0.54 -9.25 16.03 5.56 0.09 -9.16 16 18 C -0.10 -0.96 5.15 -29.03 -0.15 -1.11 16 19 C -0.10 -1.11 4.37 -104.60 -0.46 -1.57 16 20 C -0.06 -0.67 9.67 -39.61 -0.38 -1.05 16 21 C -0.21 -2.18 9.04 -39.43 -0.36 -2.53 16 22 C 0.13 1.42 6.69 -39.21 -0.26 1.16 16 23 O -0.32 -3.29 10.50 -19.40 -0.20 -3.49 16 24 C 0.03 0.17 9.81 101.05 0.99 1.17 16 25 C -0.15 -1.71 9.64 -39.43 -0.38 -2.09 16 26 C -0.03 -0.31 5.88 -104.65 -0.62 -0.93 16 27 C -0.12 -1.10 9.21 36.01 0.33 -0.77 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.01 0.26 5.98 -51.93 -0.31 -0.05 16 30 H 0.09 2.30 6.28 -51.93 -0.33 1.97 16 31 H 0.09 2.30 5.87 -51.93 -0.31 1.99 16 32 H 0.00 0.04 7.97 -51.93 -0.41 -0.38 16 33 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 35 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 36 H 0.07 1.15 5.93 -51.93 -0.31 0.84 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 41 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.10 0.78 6.98 -51.93 -0.36 0.41 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 45 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 48 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.62 8.09 -51.92 -0.42 0.20 16 51 H 0.07 0.72 6.15 -51.93 -0.32 0.40 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -31.86 405.95 -9.20 -41.06 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.42 Total: 2.57 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.45 Total: -5.06 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.30 Total: -48.30 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.11 Total: -12.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.04 Total: 16.26 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.86 -9.20 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316890973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.685 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds