Wall clock time and date at job start Tue Mar 31 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47125 * 2 1 4 4 C 1.36938 * 120.00444 * 264.29004 * 3 2 1 5 5 H 1.07991 * 120.00389 * 188.63785 * 4 3 2 6 6 C 1.38822 * 119.99665 * 8.63967 * 4 3 2 7 7 N 1.31622 * 119.99635 * 24.60620 * 6 4 3 8 8 Si 1.86799 * 119.99788 * 204.60128 * 6 4 3 9 9 H 1.48499 * 109.46910 * 85.03129 * 8 6 4 10 10 H 1.48497 * 109.46814 * 205.02715 * 8 6 4 11 11 H 1.48495 * 109.46954 * 325.02850 * 8 6 4 12 12 C 1.46501 * 119.99582 * 84.29584 * 3 2 1 13 13 C 1.53005 * 109.46842 * 269.99691 * 12 3 2 14 14 C 1.53001 * 109.46710 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.46836 * 180.02562 * 14 13 12 16 16 C 1.34772 * 120.00354 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99739 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00629 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47370 * 179.97438 * 18 16 15 20 20 C 1.38283 * 119.94285 * 265.00029 * 19 18 16 21 21 C 1.38126 * 120.05464 * 180.02562 * 20 19 18 22 22 C 1.38753 * 119.94406 * 359.97438 * 21 20 19 23 23 O 1.35893 * 120.05769 * 180.02562 * 22 21 20 24 24 C 1.42901 * 116.99918 * 359.97438 * 23 22 21 25 25 C 1.38716 * 119.88798 * 0.27498 * 22 21 20 26 26 C 1.38171 * 119.94204 * 359.49170 * 25 22 21 27 27 C 1.50699 * 119.97124 * 180.23008 * 26 25 22 28 28 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46785 * 299.99989 * 1 2 3 30 30 H 1.09004 * 109.46981 * 59.99533 * 1 2 3 31 31 H 1.09001 * 109.46906 * 240.00544 * 2 1 3 32 32 H 1.08991 * 109.47136 * 120.00666 * 2 1 3 33 33 H 0.97000 * 119.99440 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47150 * 149.99933 * 12 3 2 35 35 H 1.08995 * 109.47119 * 29.99822 * 12 3 2 36 36 H 1.08993 * 109.47209 * 59.99864 * 13 12 3 37 37 H 1.09000 * 109.46724 * 299.99748 * 13 12 3 38 38 H 1.09001 * 109.47521 * 60.00096 * 14 13 12 39 39 H 1.08992 * 109.47139 * 299.99447 * 14 13 12 40 40 H 0.97008 * 120.00094 * 359.97438 * 15 14 13 41 41 H 1.09001 * 109.46927 * 59.99648 * 18 16 15 42 42 H 1.09005 * 109.46387 * 299.99964 * 18 16 15 43 43 H 1.07998 * 119.97368 * 359.97438 * 20 19 18 44 44 H 1.07996 * 120.02629 * 179.97438 * 21 20 19 45 45 H 1.08995 * 109.47052 * 60.00529 * 24 23 22 46 46 H 1.09001 * 109.47269 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.46915 * 299.99777 * 24 23 22 48 48 H 1.07998 * 120.03143 * 179.72848 * 25 22 21 49 49 H 1.09003 * 109.47621 * 270.25832 * 27 26 25 50 50 H 1.09008 * 109.47025 * 30.25713 * 27 26 25 51 51 H 1.09002 * 109.46997 * 150.25692 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9875 -1.1800 5 1 2.8470 2.9502 -1.1713 6 6 2.0731 1.3645 -2.3874 7 7 1.0958 0.4859 -2.4602 8 14 3.0770 1.7733 -3.9088 9 1 4.3045 0.9379 -3.9310 10 1 2.2688 1.4979 -5.1238 11 1 3.4555 3.2089 -3.8810 12 6 2.1436 2.1138 1.2625 13 6 0.8339 2.8473 1.5585 14 6 0.9649 3.6129 2.8767 15 7 -0.2893 4.3147 3.1605 16 6 -0.4072 5.0589 4.2779 17 8 0.5249 5.1472 5.0488 18 6 -1.6976 5.7805 4.5702 19 6 -1.5689 6.5337 5.8692 20 6 -2.0078 5.9578 7.0473 21 6 -1.8915 6.6463 8.2391 22 6 -1.3333 7.9164 8.2536 23 8 -1.2173 8.5956 9.4249 24 6 -1.6914 7.9417 10.6037 25 6 -0.8985 8.4940 7.0696 26 6 -1.0127 7.7992 5.8808 27 6 -0.5359 8.4239 4.5950 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 0.8971 0.0504 -3.3038 34 1 2.9553 2.8370 1.1840 35 1 2.3580 1.4131 2.0694 36 1 0.0222 2.1242 1.6370 37 1 0.6195 3.5480 0.7516 38 1 1.7766 4.3361 2.7978 39 1 1.1795 2.9125 3.6838 40 1 -1.0350 4.2438 2.5441 41 1 -2.5087 5.0567 4.6491 42 1 -1.9128 6.4810 3.7633 43 1 -2.4426 4.9693 7.0355 44 1 -2.2348 6.1963 9.1589 45 1 -1.1421 7.0115 10.7490 46 1 -1.5401 8.5916 11.4656 47 1 -2.7538 7.7234 10.4957 48 1 -0.4677 9.4843 7.0776 49 1 -1.3517 8.9849 4.1391 50 1 0.2955 9.0971 4.8045 51 1 -0.2064 7.6415 3.9112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316890973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:22 Heat of formation + Delta-G solvation = -52.439297 kcal Electronic energy + Delta-G solvation = -28124.531356 eV Core-core repulsion = 24217.062689 eV Total energy + Delta-G solvation = -3907.468667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.41955 -40.50454 -38.72507 -38.20455 -36.18198 -33.87351 -33.57084 -33.13824 -32.05176 -30.68724 -29.51757 -27.69808 -27.46400 -26.50910 -24.94001 -23.28316 -22.61082 -22.14176 -21.83761 -20.93355 -18.69931 -18.67497 -17.93306 -17.56119 -17.28392 -16.76537 -16.64230 -16.59131 -15.95488 -15.78068 -15.39929 -15.11930 -14.93036 -14.78962 -14.56077 -14.29768 -14.18404 -14.13344 -13.68136 -13.34378 -13.23839 -13.08876 -13.05776 -12.90752 -12.87137 -12.71824 -12.54365 -12.53413 -12.26409 -12.12787 -12.07837 -11.81405 -11.69703 -11.64365 -11.34618 -11.14742 -10.89686 -10.31269 -10.02361 -9.72301 -9.03273 -8.79838 -7.77267 -5.08107 0.37758 0.42622 1.49581 1.53904 1.59052 1.71128 2.26524 2.37727 2.57460 2.82311 3.32041 3.68281 3.72388 3.81780 3.94475 4.07423 4.14215 4.18708 4.31169 4.33532 4.37648 4.38107 4.42694 4.51482 4.59879 4.66570 4.69196 4.73435 4.78715 4.79261 4.83046 4.86346 4.95049 5.03019 5.07732 5.18043 5.23153 5.29486 5.34523 5.36929 5.41000 5.50493 5.58355 5.66364 5.68053 5.83920 5.84929 6.21028 6.40353 6.45458 6.64022 7.26125 7.32782 7.98059 8.38042 9.24526 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.001808 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.498648 B =15480.181288 C =15981.614281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.254 4.254 5 H 0.071 0.929 6 C -0.051 4.051 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.293 1.293 10 H -0.299 1.299 11 H -0.276 1.276 12 C 0.150 3.850 13 C -0.132 4.132 14 C 0.133 3.867 15 N -0.721 5.721 16 C 0.510 3.490 17 O -0.580 6.580 18 C -0.093 4.093 19 C -0.117 4.117 20 C -0.073 4.073 21 C -0.219 4.219 22 C 0.115 3.885 23 O -0.338 6.338 24 C 0.019 3.981 25 C -0.172 4.172 26 C -0.041 4.041 27 C -0.116 4.116 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.245 0.755 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.413 0.587 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.059 0.941 46 H 0.119 0.881 47 H 0.066 0.934 48 H 0.133 0.867 49 H 0.095 0.905 50 H 0.070 0.930 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 13.386 21.386 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.334 5.334 4 C -0.384 4.384 5 H 0.089 0.911 6 C -0.245 4.245 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.221 1.221 10 H -0.226 1.226 11 H -0.202 1.202 12 C 0.023 3.977 13 C -0.172 4.172 14 C 0.008 3.992 15 N -0.373 5.373 16 C 0.298 3.702 17 O -0.460 6.460 18 C -0.132 4.132 19 C -0.117 4.117 20 C -0.091 4.091 21 C -0.238 4.238 22 C 0.070 3.930 23 O -0.252 6.252 24 C -0.075 4.075 25 C -0.191 4.191 26 C -0.041 4.041 27 C -0.172 4.172 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.250 0.750 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.078 0.922 46 H 0.137 0.863 47 H 0.085 0.915 48 H 0.151 0.849 49 H 0.113 0.887 50 H 0.089 0.911 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.187 13.543 21.827 27.633 hybrid contribution 0.163 -0.269 -1.154 1.196 sum -10.023 13.274 20.673 26.534 Atomic orbital electron populations 1.22187 0.98377 0.98662 1.00241 1.20700 0.93270 0.84506 0.97427 1.44394 1.76111 1.10623 1.02242 1.19490 1.30699 1.03495 0.84693 0.91146 1.25309 0.98937 1.00810 0.99489 1.70303 1.28163 1.32937 1.24813 0.85510 0.78700 0.77675 0.79961 1.22064 1.22563 1.20161 1.20827 0.94990 0.94473 0.87391 1.22332 1.00945 0.99079 0.94848 1.21165 0.86237 0.94991 0.96788 1.46073 1.17102 1.49790 1.24357 1.21128 0.90213 0.78590 0.80297 1.90706 1.42584 1.63889 1.48796 1.20685 0.95253 1.00397 0.96896 1.19289 1.02790 0.94695 0.94971 1.21068 0.97248 0.99500 0.91274 1.21394 1.06989 0.95174 1.00218 1.19183 0.96035 0.91548 0.86235 1.86026 1.79427 1.44900 1.14838 1.23323 0.99833 0.99435 0.84940 1.20421 1.06690 1.01888 0.90071 1.19746 0.95280 0.93755 0.95320 1.20872 1.02053 1.00780 0.93526 0.95160 0.95000 0.92291 0.92725 0.96111 0.94554 0.93616 0.92786 0.91814 0.92941 0.92764 0.92310 0.75033 0.85399 0.85760 0.84108 0.83594 0.92210 0.86304 0.91496 0.84911 0.88665 0.91103 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 9.58 71.98 0.69 -5.22 16 2 C 0.17 7.76 5.64 86.38 0.49 8.25 16 3 N -0.61 -28.94 2.54 -702.00 -1.78 -30.72 16 4 C -0.25 -13.34 9.70 84.04 0.82 -12.52 16 5 H 0.07 3.65 7.93 -2.92 -0.02 3.63 16 6 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 7 N -0.91 -50.57 8.54 21.66 0.18 -50.38 16 8 Si 0.95 44.04 29.62 68.60 2.03 46.08 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 10 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 C 0.15 5.69 5.71 86.38 0.49 6.19 16 13 C -0.13 -4.25 5.53 30.60 0.17 -4.09 16 14 C 0.13 3.72 5.67 86.38 0.49 4.21 16 15 N -0.72 -16.62 5.56 -463.07 -2.57 -19.19 16 16 C 0.51 12.51 7.04 87.66 0.62 13.12 16 17 O -0.58 -19.60 16.03 -3.04 -0.05 -19.65 16 18 C -0.09 -1.54 5.15 29.10 0.15 -1.39 16 19 C -0.12 -2.42 4.37 -19.85 -0.09 -2.51 16 20 C -0.07 -1.42 9.67 22.25 0.22 -1.21 16 21 C -0.22 -4.21 9.04 22.37 0.20 -4.01 16 22 C 0.12 2.52 6.69 22.51 0.15 2.67 16 23 O -0.34 -6.75 10.50 -92.35 -0.97 -7.72 16 24 C 0.02 0.21 9.81 113.37 1.11 1.32 16 25 C -0.17 -3.85 9.64 22.37 0.22 -3.63 16 26 C -0.04 -0.88 5.88 -19.88 -0.12 -1.00 16 27 C -0.12 -2.05 9.21 71.24 0.66 -1.39 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.03 1.23 5.98 -2.39 -0.01 1.22 16 30 H 0.06 2.97 6.28 -2.38 -0.01 2.96 16 31 H 0.05 2.91 5.87 -2.39 -0.01 2.90 16 32 H 0.02 0.88 7.97 -2.39 -0.02 0.86 16 33 H 0.24 13.36 8.31 -92.71 -0.77 12.59 16 34 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 35 H 0.05 1.89 7.95 -2.39 -0.02 1.87 16 36 H 0.06 2.10 5.93 -2.39 -0.01 2.08 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.41 7.44 8.47 -92.70 -0.79 6.65 16 41 H 0.13 1.42 8.05 -2.39 -0.02 1.40 16 42 H 0.12 1.52 6.98 -2.38 -0.02 1.50 16 43 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.15 2.04 6.30 -2.91 -0.02 2.02 16 45 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 46 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 48 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 49 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 51 H 0.06 1.18 6.15 -2.39 -0.01 1.16 16 Total: -1.00 -68.72 405.95 3.66 -65.06 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.14 Total: 20.02 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 6.68 Total: -3.50 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -4.17 Total: -100.29 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -1.02 Total: -27.37 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.72 3.66 -65.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316890973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.623 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds