Wall clock time and date at job start Tue Mar 31 2020 19:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47324 * 2 1 4 4 C 1.35900 * 117.00086 * 180.02562 * 3 2 1 5 5 C 1.38740 * 120.05712 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94681 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94136 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00102 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99736 * 359.97438 * 12 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 15 15 H 1.08994 * 109.46996 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.46787 * 120.00103 * 14 12 10 17 17 C 1.52998 * 109.46812 * 239.99682 * 14 12 10 18 18 N 1.46510 * 109.46987 * 55.00083 * 17 14 12 19 19 C 1.36930 * 119.99750 * 179.97438 * 18 17 14 20 20 H 1.08001 * 120.00447 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99949 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00220 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00002 * 359.97438 * 21 19 18 24 24 H 1.48512 * 109.46847 * 90.00274 * 23 21 19 25 25 H 1.48501 * 109.47649 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47164 * 330.00507 * 23 21 19 27 27 C 1.38261 * 120.11222 * 0.25270 * 7 6 5 28 28 C 1.38144 * 120.05633 * 359.45047 * 27 7 6 29 29 H 1.09000 * 109.46990 * 300.00023 * 1 2 3 30 30 H 1.08998 * 109.47102 * 59.99979 * 1 2 3 31 31 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46990 * 239.99977 * 2 1 3 33 33 H 1.09000 * 109.47320 * 120.00523 * 2 1 3 34 34 H 1.07998 * 120.02343 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.97195 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47060 * 210.00157 * 8 7 6 37 37 H 1.09001 * 109.47380 * 330.00244 * 8 7 6 38 38 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 39 39 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 40 40 H 1.08996 * 109.46784 * 90.00263 * 13 12 10 41 41 H 1.09003 * 109.47146 * 209.99886 * 13 12 10 42 42 H 1.08994 * 109.47096 * 330.00470 * 13 12 10 43 43 H 1.09001 * 109.47426 * 299.99347 * 16 14 12 44 44 H 1.08994 * 109.47493 * 60.00132 * 16 14 12 45 45 H 1.09004 * 109.46677 * 179.97438 * 16 14 12 46 46 H 1.08999 * 109.47240 * 174.99585 * 17 14 12 47 47 H 1.08992 * 109.47515 * 295.00094 * 17 14 12 48 48 H 0.97001 * 119.99978 * 0.02562 * 18 17 14 49 49 H 0.97006 * 120.00146 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.97190 * 179.70663 * 27 7 6 51 51 H 1.08001 * 120.03140 * 180.25189 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8068 0.0000 6 6 5.2551 2.9851 -0.0011 7 6 6.0963 1.8877 -0.0032 8 6 7.5903 2.0852 -0.0050 9 6 8.0978 2.1506 1.4368 10 6 9.5918 2.3475 1.4351 11 8 10.1917 2.4280 0.3841 12 7 10.2615 2.4340 2.6015 13 6 9.5369 2.3373 3.8711 14 6 11.7140 2.6259 2.5998 15 1 12.0728 2.6746 1.5718 16 6 12.0568 3.9302 3.3226 17 6 12.3841 1.4532 3.3185 18 7 11.9604 0.1947 2.6996 19 6 12.4350 -0.9973 3.1780 20 1 13.1220 -1.0098 4.0113 21 6 12.0340 -2.1897 2.5913 22 7 12.4898 -3.3355 3.0515 23 14 10.8463 -2.1682 1.1497 24 1 11.6113 -2.0886 -0.1208 25 1 10.0323 -3.4102 1.1602 26 1 9.9513 -0.9887 1.2632 27 6 5.5690 0.6096 -0.0096 28 6 4.1999 0.4259 -0.0023 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2286 3.6642 0.0012 35 1 5.6693 3.9825 -0.0003 36 1 8.0664 1.2509 -0.5203 37 1 7.8332 3.0156 -0.5183 38 1 7.6216 2.9848 1.9521 39 1 7.8549 1.2203 1.9502 40 1 9.4911 1.2944 4.1847 41 1 10.0551 2.9227 4.6308 42 1 8.5255 2.7228 3.7425 43 1 11.5794 4.7657 2.8106 44 1 11.6981 3.8811 4.3506 45 1 13.1375 4.0727 3.3217 46 1 13.4670 1.5500 3.2402 47 1 12.0940 1.4572 4.3691 48 1 11.3442 0.2059 1.9505 49 1 12.2098 -4.1688 2.6412 50 1 6.2281 -0.2459 -0.0160 51 1 3.7885 -0.5727 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319487468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:07 Heat of formation + Delta-G solvation = -43.919313 kcal Electronic energy + Delta-G solvation = -28845.632377 eV Core-core repulsion = 24938.533164 eV Total energy + Delta-G solvation = -3907.099213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43706 -39.85520 -38.07581 -36.55414 -34.16587 -33.74405 -32.20260 -31.72972 -31.09860 -30.53388 -28.79332 -26.75075 -25.91175 -24.81569 -24.16091 -22.35578 -22.11524 -21.26702 -20.50293 -18.78941 -18.51694 -17.54686 -17.17157 -16.42032 -16.32409 -15.90363 -15.55798 -15.25933 -14.65015 -14.57020 -14.09163 -13.93357 -13.88434 -13.70448 -13.55739 -13.33943 -12.95893 -12.87529 -12.67802 -12.61623 -12.48268 -12.41885 -12.16377 -12.03841 -12.00039 -11.77981 -11.72414 -11.41521 -11.17482 -10.93519 -10.92111 -10.83269 -10.78958 -10.53169 -10.09782 -9.58324 -9.53328 -9.18308 -8.88802 -8.36243 -8.24787 -7.20594 -5.75892 -3.10245 1.15936 1.23068 2.87680 2.90669 3.21223 3.38753 3.45199 3.48285 3.58531 4.50803 4.53318 4.54881 4.61484 4.66722 4.72774 4.85624 4.94103 5.02084 5.05155 5.10645 5.17970 5.23357 5.27344 5.30994 5.34189 5.38077 5.45936 5.49768 5.55599 5.57389 5.62542 5.68990 5.77348 5.84751 5.88427 5.94658 6.02448 6.05647 6.08583 6.15945 6.19672 6.24196 6.39940 6.53998 6.59092 6.64544 6.88902 7.17909 7.62760 8.00564 8.41467 8.44468 9.23533 9.96481 10.17296 11.42473 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.002862 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.673101 B = 9782.543273 C =11435.687808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.319 6.319 4 C 0.122 3.878 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.115 4.115 8 C -0.062 4.062 9 C -0.133 4.133 10 C 0.513 3.487 11 O -0.545 6.545 12 N -0.601 5.601 13 C 0.077 3.923 14 C 0.120 3.880 15 H 0.100 0.900 16 C -0.154 4.154 17 C 0.149 3.851 18 N -0.752 5.752 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.935 5.935 23 Si 0.882 3.118 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C -0.074 4.074 28 C -0.205 4.205 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.036 0.964 47 H 0.028 0.972 48 H 0.363 0.637 49 H 0.259 0.741 50 H 0.126 0.874 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.954 14.264 -2.941 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.233 6.233 4 C 0.077 3.923 5 C -0.170 4.170 6 C -0.094 4.094 7 C -0.115 4.115 8 C -0.100 4.100 9 C -0.173 4.173 10 C 0.301 3.699 11 O -0.423 6.423 12 N -0.334 5.334 13 C -0.066 4.066 14 C 0.017 3.983 15 H 0.118 0.882 16 C -0.213 4.213 17 C 0.021 3.979 18 N -0.397 5.397 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.583 5.583 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.092 4.092 28 C -0.224 4.224 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.196 0.804 49 H 0.069 0.931 50 H 0.144 0.856 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.665 14.275 -3.341 25.337 hybrid contribution -0.768 -0.578 -0.816 1.261 sum -21.433 13.696 -4.157 25.773 Atomic orbital electron populations 1.21774 0.92743 1.02894 1.03468 1.22781 0.95838 0.82023 1.01533 1.86046 1.19183 1.29279 1.88802 1.18987 0.82129 0.94209 0.96970 1.20392 0.95162 0.94693 1.06761 1.20873 0.91965 0.98751 0.97858 1.19847 0.95756 0.93016 1.02862 1.20292 0.89946 1.04218 0.95556 1.21690 0.92376 1.04260 0.99010 1.20627 0.89883 0.75915 0.83442 1.90679 1.70121 1.50593 1.30904 1.47776 1.07760 1.71707 1.06115 1.21774 0.96146 1.02840 0.85839 1.21448 0.79445 0.95034 1.02345 0.88189 1.22045 1.02071 0.96609 1.00578 1.20978 0.96642 0.84968 0.95349 1.42644 1.55964 1.01836 1.39302 1.19049 1.22196 0.82562 1.13293 0.89251 1.24638 1.00134 0.95197 0.99110 1.69705 1.48193 0.96757 1.43631 0.86572 0.81779 0.76449 0.83914 1.21032 1.21814 1.20437 1.20956 0.94289 0.97135 0.96852 1.21238 0.94304 0.98029 1.08800 0.91513 0.91565 0.90343 0.92035 0.91951 0.85355 0.85304 0.90200 0.90215 0.88985 0.88760 0.91651 0.90981 0.91575 0.92603 0.92241 0.91251 0.94618 0.95387 0.80381 0.93124 0.85565 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.05 0.40 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.34 10.14 -19.43 -0.20 -3.54 16 4 C 0.12 1.36 6.69 -39.21 -0.26 1.09 16 5 C -0.15 -1.58 9.99 -39.43 -0.39 -1.97 16 6 C -0.08 -0.78 9.69 -39.61 -0.38 -1.17 16 7 C -0.11 -1.33 5.13 -104.60 -0.54 -1.87 16 8 C -0.06 -0.80 4.63 -27.88 -0.13 -0.93 16 9 C -0.13 -1.72 4.23 -27.89 -0.12 -1.84 16 10 C 0.51 8.50 7.38 -10.99 -0.08 8.42 16 11 O -0.55 -10.90 15.31 5.55 0.08 -10.82 16 12 N -0.60 -9.31 2.24 -173.93 -0.39 -9.70 16 13 C 0.08 0.95 9.40 59.85 0.56 1.51 16 14 C 0.12 1.95 2.80 -67.93 -0.19 1.76 16 15 H 0.10 1.84 6.90 -51.93 -0.36 1.48 16 16 C -0.15 -1.86 9.17 37.16 0.34 -1.52 16 17 C 0.15 2.89 5.56 -4.04 -0.02 2.87 16 18 N -0.75 -18.46 5.24 -59.91 -0.31 -18.77 16 19 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 20 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.80 13.97 55.49 0.78 -29.03 16 23 Si 0.88 23.16 27.73 -169.99 -4.71 18.45 16 24 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 27 C -0.07 -0.88 9.69 -39.61 -0.38 -1.26 16 28 C -0.20 -2.24 9.04 -39.43 -0.36 -2.59 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 33 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.09 0.93 7.40 -51.93 -0.38 0.55 16 39 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.76 6.42 -51.93 -0.33 0.43 16 42 H 0.07 0.63 6.44 -51.93 -0.33 0.30 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.03 0.53 7.84 -51.93 -0.41 0.12 16 48 H 0.36 9.12 4.93 -40.82 -0.20 8.92 16 49 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 50 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 51 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 LS Contribution 410.44 15.07 6.19 6.19 Total: -1.00 -35.35 410.44 -8.76 -44.11 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -8.57 Total: 7.51 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.62 Total: -4.41 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.07 Total: -57.50 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.11 Total: -14.36 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.71 Total: 18.45 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.35 -8.76 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319487468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.195 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds