Wall clock time and date at job start Tue Mar 31 2020 19:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47324 * 2 1 4 4 C 1.35900 * 117.00086 * 180.02562 * 3 2 1 5 5 C 1.38740 * 120.05712 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94681 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94136 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 90.00102 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99736 * 359.97438 * 12 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 15 15 H 1.08994 * 109.46996 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.46787 * 120.00103 * 14 12 10 17 17 C 1.52998 * 109.46812 * 239.99682 * 14 12 10 18 18 N 1.46510 * 109.46987 * 55.00083 * 17 14 12 19 19 C 1.36930 * 119.99750 * 179.97438 * 18 17 14 20 20 H 1.08001 * 120.00447 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99949 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00220 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00002 * 359.97438 * 21 19 18 24 24 H 1.48512 * 109.46847 * 90.00274 * 23 21 19 25 25 H 1.48501 * 109.47649 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47164 * 330.00507 * 23 21 19 27 27 C 1.38261 * 120.11222 * 0.25270 * 7 6 5 28 28 C 1.38144 * 120.05633 * 359.45047 * 27 7 6 29 29 H 1.09000 * 109.46990 * 300.00023 * 1 2 3 30 30 H 1.08998 * 109.47102 * 59.99979 * 1 2 3 31 31 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46990 * 239.99977 * 2 1 3 33 33 H 1.09000 * 109.47320 * 120.00523 * 2 1 3 34 34 H 1.07998 * 120.02343 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.97195 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47060 * 210.00157 * 8 7 6 37 37 H 1.09001 * 109.47380 * 330.00244 * 8 7 6 38 38 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 39 39 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 40 40 H 1.08996 * 109.46784 * 90.00263 * 13 12 10 41 41 H 1.09003 * 109.47146 * 209.99886 * 13 12 10 42 42 H 1.08994 * 109.47096 * 330.00470 * 13 12 10 43 43 H 1.09001 * 109.47426 * 299.99347 * 16 14 12 44 44 H 1.08994 * 109.47493 * 60.00132 * 16 14 12 45 45 H 1.09004 * 109.46677 * 179.97438 * 16 14 12 46 46 H 1.08999 * 109.47240 * 174.99585 * 17 14 12 47 47 H 1.08992 * 109.47515 * 295.00094 * 17 14 12 48 48 H 0.97001 * 119.99978 * 0.02562 * 18 17 14 49 49 H 0.97006 * 120.00146 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.97190 * 179.70663 * 27 7 6 51 51 H 1.08001 * 120.03140 * 180.25189 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8068 0.0000 6 6 5.2551 2.9851 -0.0011 7 6 6.0963 1.8877 -0.0032 8 6 7.5903 2.0852 -0.0050 9 6 8.0978 2.1506 1.4368 10 6 9.5918 2.3475 1.4351 11 8 10.1917 2.4280 0.3841 12 7 10.2615 2.4340 2.6015 13 6 9.5369 2.3373 3.8711 14 6 11.7140 2.6259 2.5998 15 1 12.0728 2.6746 1.5718 16 6 12.0568 3.9302 3.3226 17 6 12.3841 1.4532 3.3185 18 7 11.9604 0.1947 2.6996 19 6 12.4350 -0.9973 3.1780 20 1 13.1220 -1.0098 4.0113 21 6 12.0340 -2.1897 2.5913 22 7 12.4898 -3.3355 3.0515 23 14 10.8463 -2.1682 1.1497 24 1 11.6113 -2.0886 -0.1208 25 1 10.0323 -3.4102 1.1602 26 1 9.9513 -0.9887 1.2632 27 6 5.5690 0.6096 -0.0096 28 6 4.1999 0.4259 -0.0023 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2286 3.6642 0.0012 35 1 5.6693 3.9825 -0.0003 36 1 8.0664 1.2509 -0.5203 37 1 7.8332 3.0156 -0.5183 38 1 7.6216 2.9848 1.9521 39 1 7.8549 1.2203 1.9502 40 1 9.4911 1.2944 4.1847 41 1 10.0551 2.9227 4.6308 42 1 8.5255 2.7228 3.7425 43 1 11.5794 4.7657 2.8106 44 1 11.6981 3.8811 4.3506 45 1 13.1375 4.0727 3.3217 46 1 13.4670 1.5500 3.2402 47 1 12.0940 1.4572 4.3691 48 1 11.3442 0.2059 1.9505 49 1 12.2098 -4.1688 2.6412 50 1 6.2281 -0.2459 -0.0160 51 1 3.7885 -0.5727 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319487468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:06 Heat of formation + Delta-G solvation = -65.102514 kcal Electronic energy + Delta-G solvation = -28846.550950 eV Core-core repulsion = 24938.533164 eV Total energy + Delta-G solvation = -3908.017785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32616 -40.97850 -38.89179 -37.95178 -35.95275 -34.77134 -33.66272 -32.68383 -32.15844 -31.83342 -29.68992 -27.83370 -27.56722 -25.75055 -24.89325 -24.07444 -23.04251 -22.36130 -21.58323 -20.19016 -19.49305 -19.25576 -18.34597 -17.22239 -17.17170 -17.04870 -16.71585 -16.61631 -16.18171 -15.79183 -15.35633 -15.05558 -14.95426 -14.75077 -14.45598 -14.34042 -14.29211 -14.12808 -13.87607 -13.68224 -13.66221 -13.47704 -13.36407 -13.09820 -13.00642 -12.92460 -12.64725 -12.51588 -12.42478 -12.33027 -12.24786 -12.06876 -11.88847 -11.73129 -11.64419 -11.59163 -11.09574 -10.78250 -9.98452 -9.60713 -9.33577 -9.06973 -8.08725 -5.39684 0.36059 0.39137 1.26152 1.32102 1.36534 1.63172 2.06778 2.24735 2.39775 2.75138 3.23274 3.45661 3.64186 3.77791 3.91068 3.95932 4.02421 4.03149 4.05402 4.17765 4.20845 4.29613 4.33029 4.35117 4.38525 4.40803 4.46455 4.55622 4.63811 4.74149 4.79433 4.84222 4.88792 4.90029 4.91167 4.91944 5.03320 5.07380 5.14056 5.14942 5.18858 5.30977 5.32331 5.38357 5.62318 5.68755 5.71966 5.80588 6.16214 6.43546 6.43967 7.02127 7.19078 7.80075 7.97761 9.12849 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.002862 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.673101 B = 9782.543273 C =11435.687808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.330 6.330 4 C 0.113 3.887 5 C -0.156 4.156 6 C -0.071 4.071 7 C -0.122 4.122 8 C -0.056 4.056 9 C -0.126 4.126 10 C 0.502 3.498 11 O -0.588 6.588 12 N -0.603 5.603 13 C 0.072 3.928 14 C 0.125 3.875 15 H 0.074 0.926 16 C -0.143 4.143 17 C 0.144 3.856 18 N -0.756 5.756 19 C -0.226 4.226 20 H 0.065 0.935 21 C -0.057 4.057 22 N -0.979 5.979 23 Si 0.944 3.056 24 H -0.291 1.291 25 H -0.287 1.287 26 H -0.263 1.263 27 C -0.090 4.090 28 C -0.210 4.210 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.035 0.965 47 H 0.041 0.959 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.121 0.879 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.163 16.467 -2.509 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.245 6.245 4 C 0.068 3.932 5 C -0.175 4.175 6 C -0.089 4.089 7 C -0.122 4.122 8 C -0.094 4.094 9 C -0.165 4.165 10 C 0.292 3.708 11 O -0.469 6.469 12 N -0.335 5.335 13 C -0.069 4.069 14 C 0.021 3.979 15 H 0.092 0.908 16 C -0.201 4.201 17 C 0.017 3.983 18 N -0.401 5.401 19 C -0.357 4.357 20 H 0.083 0.917 21 C -0.248 4.248 22 N -0.630 5.630 23 Si 0.773 3.227 24 H -0.218 1.218 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.108 4.108 28 C -0.229 4.229 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.193 0.807 49 H 0.067 0.933 50 H 0.139 0.861 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.892 16.524 -2.871 28.378 hybrid contribution -0.040 -1.234 -0.889 1.521 sum -22.932 15.291 -3.760 27.817 Atomic orbital electron populations 1.21797 0.91312 1.04105 1.03319 1.23031 0.97020 0.80965 1.02004 1.86042 1.18801 1.30970 1.88685 1.19202 0.82547 0.94594 0.96840 1.20663 0.95527 0.95071 1.06204 1.21077 0.91754 0.99306 0.96784 1.19770 0.95054 0.93469 1.03942 1.20174 0.90652 1.03188 0.95351 1.21712 0.89880 1.05503 0.99429 1.21320 0.91334 0.75100 0.83048 1.90657 1.71231 1.52572 1.32444 1.47949 1.07525 1.70922 1.07094 1.21991 0.98039 1.02092 0.84826 1.21320 0.79988 0.95610 1.00959 0.90809 1.21961 1.02960 0.94126 1.01033 1.21220 0.96937 0.84093 0.96026 1.42708 1.55753 1.02311 1.39349 1.19068 1.20578 0.84213 1.11823 0.91731 1.25313 1.02481 0.95000 1.02048 1.69846 1.50237 0.97396 1.45490 0.85578 0.79918 0.77025 0.80205 1.21798 1.21322 1.18867 1.21031 0.94750 0.97269 0.97727 1.21368 0.93974 0.98846 1.08707 0.91658 0.91685 0.88462 0.91537 0.91499 0.83766 0.83077 0.92886 0.89996 0.85468 0.88908 0.93884 0.88791 0.88285 0.91505 0.90373 0.90279 0.94691 0.94096 0.80676 0.93296 0.86146 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.04 0.60 5.46 71.98 0.39 1.00 16 3 O -0.33 -6.44 10.14 -92.42 -0.94 -7.38 16 4 C 0.11 2.34 6.69 22.51 0.15 2.49 16 5 C -0.16 -2.91 9.99 22.37 0.22 -2.69 16 6 C -0.07 -1.29 9.69 22.25 0.22 -1.08 16 7 C -0.12 -2.66 5.13 -19.85 -0.10 -2.76 16 8 C -0.06 -1.37 4.63 29.85 0.14 -1.23 16 9 C -0.13 -2.98 4.23 29.85 0.13 -2.85 16 10 C 0.50 15.96 7.38 87.66 0.65 16.61 16 11 O -0.59 -23.44 15.31 -3.05 -0.05 -23.49 16 12 N -0.60 -17.48 2.24 -822.59 -1.85 -19.32 16 13 C 0.07 1.56 9.40 127.77 1.20 2.76 16 14 C 0.13 3.86 2.80 44.99 0.13 3.99 16 15 H 0.07 2.70 6.90 -2.39 -0.02 2.68 16 16 C -0.14 -2.99 9.17 71.98 0.66 -2.33 16 17 C 0.14 5.45 5.56 86.38 0.48 5.93 16 18 N -0.76 -36.96 5.24 -343.45 -1.80 -38.76 16 19 C -0.23 -13.17 10.47 84.03 0.88 -12.29 16 20 H 0.06 4.04 8.06 -2.91 -0.02 4.01 16 21 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 22 N -0.98 -63.71 13.97 21.65 0.30 -63.40 16 23 Si 0.94 48.72 27.73 68.60 1.90 50.63 16 24 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 25 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.26 -12.75 6.52 99.48 0.65 -12.11 16 27 C -0.09 -2.05 9.69 22.25 0.22 -1.83 16 28 C -0.21 -4.36 9.04 22.37 0.20 -4.16 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 33 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 34 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.05 1.57 8.04 -2.39 -0.02 1.55 16 37 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 38 H 0.13 2.09 7.40 -2.39 -0.02 2.07 16 39 H 0.09 2.26 8.11 -2.39 -0.02 2.25 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.61 6.42 -2.39 -0.02 1.59 16 42 H 0.10 1.48 6.44 -2.39 -0.02 1.46 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.36 6.66 -2.39 -0.02 1.35 16 45 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 48 H 0.36 17.98 4.93 -92.71 -0.46 17.52 16 49 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 50 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 51 H 0.14 2.38 6.30 -2.91 -0.02 2.37 16 Total: -1.00 -78.04 410.44 4.73 -73.31 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.39 Total: 30.51 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.76 Total: -2.09 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -3.34 Total: -121.49 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.98 Total: -30.86 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.90 Total: 50.63 kcal Total: -78.04 4.73 -73.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319487468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.207 kcal (2) G-P(sol) polarization free energy of solvation -78.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds