Wall clock time and date at job start Tue Mar 31 2020 17:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42897 * 109.46807 * 211.34956 * 3 2 1 5 5 C 1.42901 * 113.99891 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46946 * 329.99766 * 5 4 3 7 7 C 1.52995 * 109.47396 * 89.99811 * 5 4 3 8 8 C 1.50699 * 109.47179 * 210.00283 * 5 4 3 9 9 O 1.21277 * 120.00042 * 344.65696 * 8 5 4 10 10 N 1.34779 * 119.99939 * 164.66538 * 8 5 4 11 11 C 1.47556 * 118.63917 * 3.30686 * 10 8 5 12 12 C 1.53956 * 112.18144 * 137.87367 * 11 10 8 13 13 C 1.50873 * 110.19873 * 319.37067 * 12 11 10 14 14 C 1.52628 * 109.38661 * 91.80878 * 13 12 11 15 15 C 1.47075 * 114.24007 * 275.32865 * 14 13 12 16 16 C 1.54239 * 112.36710 * 183.87128 * 15 14 13 17 17 C 1.54406 * 104.94717 * 122.24457 * 16 15 14 18 18 N 1.48153 * 104.59687 * 23.93303 * 17 16 15 19 19 C 1.36944 * 127.84411 * 140.30704 * 18 17 16 20 20 H 1.08004 * 119.99531 * 191.50970 * 19 18 17 21 21 C 1.38809 * 120.00098 * 11.51082 * 19 18 17 22 22 N 1.31614 * 119.99983 * 12.68615 * 21 19 18 23 23 Si 1.86806 * 119.99818 * 192.68372 * 21 19 18 24 24 H 1.48506 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46959 * 119.99741 * 23 21 19 26 26 H 1.48494 * 109.47164 * 240.00029 * 23 21 19 27 27 C 1.48154 * 104.30568 * 320.33764 * 18 17 16 28 28 C 1.44595 * 118.63607 * 183.33128 * 10 8 5 29 29 H 4.38441 * 5.44467 * 179.97438 * 4 1 2 30 30 H 1.09007 * 109.47110 * 91.35135 * 3 2 1 31 31 H 1.08999 * 109.47032 * 331.34839 * 3 2 1 32 32 H 1.08999 * 109.47449 * 172.95153 * 7 5 4 33 33 H 1.09004 * 109.47509 * 292.95850 * 7 5 4 34 34 H 1.08999 * 109.46990 * 52.95590 * 7 5 4 35 35 H 1.08997 * 108.93787 * 17.17826 * 11 10 8 36 36 H 1.08999 * 108.86932 * 258.51935 * 11 10 8 37 37 H 1.09000 * 109.34946 * 199.14323 * 12 11 10 38 38 H 1.09001 * 109.34666 * 79.59134 * 12 11 10 39 39 H 1.08994 * 109.48409 * 331.83003 * 13 12 11 40 40 H 1.09006 * 109.48344 * 211.78432 * 13 12 11 41 41 H 1.09000 * 108.52743 * 154.10197 * 14 13 12 42 42 H 1.08997 * 108.52969 * 36.56341 * 14 13 12 43 43 H 1.09001 * 110.34470 * 241.10929 * 16 15 14 44 44 H 1.08996 * 110.34547 * 3.37315 * 16 15 14 45 45 H 1.09000 * 110.41330 * 142.71810 * 17 16 15 46 46 H 1.09007 * 110.41003 * 265.15647 * 17 16 15 47 47 H 0.97006 * 119.99628 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.41351 * 280.85372 * 27 18 17 49 49 H 1.08998 * 110.41250 * 158.40547 * 27 18 17 50 50 H 1.09000 * 109.47309 * 150.56865 * 28 10 8 51 51 H 1.08998 * 109.47700 * 30.56000 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1514 0.7009 5 6 4.5463 1.2488 0.7592 6 1 4.9794 0.2485 0.7511 7 6 5.0538 2.0341 -0.4518 8 6 4.9498 1.9606 2.0246 9 8 4.1260 2.5866 2.6574 10 7 6.2263 1.9018 2.4531 11 6 7.2194 1.1944 1.6221 12 6 8.5559 1.9543 1.5403 13 6 8.3052 3.4352 1.3978 14 6 8.2743 4.0793 2.7812 15 6 6.9674 4.0071 3.4518 16 6 6.9586 4.7524 4.8022 17 6 5.8341 5.8023 4.6703 18 7 4.9319 5.2545 3.6306 19 6 3.5629 5.2810 3.6073 20 1 3.0235 4.6852 2.8859 21 6 2.8686 6.0737 4.5109 22 7 3.5084 6.9817 5.2169 23 14 1.0262 5.8515 4.7249 24 1 0.5496 4.7729 3.8222 25 1 0.7323 5.4835 6.1332 26 1 0.3324 7.1209 4.3898 27 6 5.8471 4.6709 2.6223 28 6 6.5657 2.5340 3.7085 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0094 0.0251 -1.0274 31 1 3.0097 -0.9010 0.4927 32 1 6.1230 2.2166 -0.3445 33 1 4.8726 1.4590 -1.3599 34 1 4.5272 2.9865 -0.5139 35 1 6.8180 1.0753 0.6158 36 1 7.3989 0.2082 2.0501 37 1 9.1211 1.5991 0.6787 38 1 9.1315 1.7711 2.4476 39 1 7.3487 3.5958 0.9005 40 1 9.1029 3.8837 0.8056 41 1 8.5550 5.1278 2.6814 42 1 9.0143 3.5845 3.4102 43 1 6.7379 4.0608 5.6153 44 1 7.9173 5.2429 4.9705 45 1 5.3028 5.9111 5.6158 46 1 6.2442 6.7605 4.3513 47 1 3.0232 7.5354 5.8486 48 1 6.2588 5.4532 1.9846 49 1 5.3258 3.9252 2.0222 50 1 7.4003 2.0046 4.1680 51 1 5.7042 2.5032 4.3755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324555909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:13 Heat of formation + Delta-G solvation = 33.237586 kcal Electronic energy + Delta-G solvation = -31850.872192 eV Core-core repulsion = 27947.118753 eV Total energy + Delta-G solvation = -3903.753439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.86282 -38.69004 -37.24969 -36.14801 -33.68321 -33.40056 -32.67169 -31.40017 -30.29692 -28.59787 -27.21906 -26.74904 -25.77694 -24.92358 -23.79951 -22.61858 -20.86766 -20.05058 -19.30568 -18.68281 -17.99764 -17.12195 -16.77784 -16.72282 -15.82629 -15.35566 -15.28159 -14.96827 -14.58553 -14.35821 -14.14744 -13.65848 -13.61571 -13.46259 -13.16297 -12.79076 -12.67196 -12.36184 -12.27495 -12.02638 -11.97194 -11.81886 -11.46084 -11.28075 -11.08829 -10.83325 -10.74496 -10.69938 -10.63626 -10.57315 -10.50669 -10.22259 -9.95065 -9.83561 -9.77692 -9.50453 -9.45551 -9.26190 -8.98547 -8.33600 -8.15331 -6.52536 -5.44360 -2.71419 2.32749 2.72205 2.98598 3.18008 3.60125 3.66074 3.74250 3.93172 4.35722 4.56436 4.65102 4.75567 4.79172 4.86566 4.96641 5.00835 5.06579 5.14591 5.21226 5.23215 5.36487 5.48917 5.53371 5.62479 5.69637 5.73112 5.75388 5.80774 5.84998 5.93865 5.98164 6.07410 6.13448 6.24769 6.28880 6.35607 6.41589 6.49778 6.59430 6.75198 6.89383 6.92953 7.07621 7.09284 7.14163 7.49235 7.59930 7.65340 7.85201 8.13050 8.53660 8.67555 9.51202 10.12140 10.86803 11.70611 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007857 B = 0.006498 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.949129 B = 4308.015302 C = 7370.325801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.171 3.829 4 O -0.346 6.346 5 C 0.073 3.927 6 H 0.080 0.920 7 C -0.179 4.179 8 C 0.491 3.509 9 O -0.453 6.453 10 N -0.606 5.606 11 C 0.099 3.901 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.094 4.094 15 C -0.091 4.091 16 C -0.130 4.130 17 C 0.152 3.848 18 N -0.582 5.582 19 C -0.177 4.177 20 H 0.083 0.917 21 C -0.024 4.024 22 N -0.929 5.929 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.297 1.297 27 C 0.134 3.866 28 C 0.138 3.862 29 H 0.222 0.778 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.012 0.988 47 H 0.246 0.754 48 H 0.003 0.997 49 H 0.065 0.935 50 H 0.061 0.939 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 -16.878 -11.811 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.095 3.905 4 O -0.264 6.264 5 C 0.011 3.989 6 H 0.097 0.903 7 C -0.236 4.236 8 C 0.276 3.724 9 O -0.322 6.322 10 N -0.343 5.343 11 C -0.024 4.024 12 C -0.167 4.167 13 C -0.155 4.155 14 C -0.132 4.132 15 C -0.094 4.094 16 C -0.170 4.170 17 C 0.026 3.974 18 N -0.304 5.304 19 C -0.306 4.306 20 H 0.101 0.899 21 C -0.218 4.218 22 N -0.580 5.580 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.225 1.225 27 C 0.007 3.993 28 C 0.016 3.984 29 H 0.238 0.762 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.030 0.970 47 H 0.056 0.944 48 H 0.021 0.979 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.737 -16.311 -11.268 22.086 hybrid contribution -0.779 -0.217 0.058 0.810 sum 8.958 -16.527 -11.210 21.887 Atomic orbital electron populations 1.24969 0.95902 0.98233 0.99796 1.22428 0.93840 1.01851 1.01137 1.19140 0.85130 0.89298 0.96902 1.88215 1.19080 1.43236 1.75896 1.21981 0.82649 0.99376 0.94863 0.90252 1.22407 1.02281 1.02329 0.96621 1.20231 0.83091 0.82401 0.86717 1.91041 1.49454 1.36849 1.54877 1.47630 1.07534 1.56369 1.22767 1.22117 0.89893 0.94933 0.95488 1.21752 0.96203 0.96363 1.02376 1.21082 1.02072 0.94383 0.97930 1.20356 0.96910 1.00685 0.95204 1.21099 0.95512 0.95373 0.97435 1.22782 0.99834 0.99411 0.94979 1.21575 0.88485 0.91413 0.95905 1.44824 1.01001 1.65560 1.18992 1.19199 0.79405 1.17713 1.14263 0.89904 1.24712 0.97419 0.98059 1.01609 1.69928 1.33935 1.23837 1.30271 0.86146 0.86148 0.77025 0.77383 1.20358 1.22222 1.22455 1.21934 0.90131 0.95126 0.92121 1.21603 1.00675 0.91743 0.84389 0.76160 0.90872 0.90967 0.90285 0.91492 0.90334 0.89998 0.92260 0.91067 0.91477 0.91274 0.92258 0.92519 0.92957 0.92711 0.93136 0.89421 0.96970 0.94410 0.97897 0.91711 0.92057 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.19 -2.59 13.73 -37.12 -0.51 -3.10 16 3 C 0.17 1.98 6.22 34.37 0.21 2.19 16 4 O -0.35 -5.51 9.53 -54.66 -0.52 -6.03 16 5 C 0.07 0.94 2.27 -27.89 -0.06 0.88 16 6 H 0.08 0.73 6.99 -51.92 -0.36 0.37 16 7 C -0.18 -1.92 9.03 37.15 0.34 -1.59 16 8 C 0.49 8.33 5.10 -10.98 -0.06 8.28 16 9 O -0.45 -10.51 11.82 -13.87 -0.16 -10.67 16 10 N -0.61 -8.51 2.00 -172.59 -0.35 -8.86 16 11 C 0.10 0.91 5.35 -2.97 -0.02 0.89 16 12 C -0.13 -1.10 5.70 -27.30 -0.16 -1.26 16 13 C -0.12 -1.31 5.45 -27.99 -0.15 -1.47 16 14 C -0.09 -1.29 3.83 -29.77 -0.11 -1.41 16 15 C -0.09 -1.60 0.67 -155.01 -0.10 -1.70 16 16 C -0.13 -2.56 6.24 -25.35 -0.16 -2.71 16 17 C 0.15 3.89 5.98 -2.40 -0.01 3.87 16 18 N -0.58 -15.83 3.31 -168.83 -0.56 -16.39 16 19 C -0.18 -5.39 9.40 -15.06 -0.14 -5.53 16 20 H 0.08 2.62 6.82 -52.48 -0.36 2.26 16 21 C -0.02 -0.75 5.38 -17.43 -0.09 -0.84 16 22 N -0.93 -29.38 10.80 55.49 0.60 -28.78 16 23 Si 0.90 24.65 29.57 -169.99 -5.03 19.62 16 24 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.29 -8.05 7.11 56.52 0.40 -7.64 16 26 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 27 C 0.13 2.96 4.39 -2.40 -0.01 2.95 16 28 C 0.14 2.25 4.21 -4.10 -0.02 2.23 16 29 H 0.22 1.80 7.80 -54.08 -0.42 1.37 16 30 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 31 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.08 0.73 5.28 -51.93 -0.27 0.45 16 33 H 0.07 0.53 8.05 -51.93 -0.42 0.12 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.62 4.02 -51.93 -0.21 0.41 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.57 7.33 -51.93 -0.38 0.19 16 39 H 0.07 0.90 5.79 -51.93 -0.30 0.60 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 43 H 0.05 1.05 7.53 -51.93 -0.39 0.66 16 44 H 0.05 0.87 7.79 -51.93 -0.40 0.47 16 45 H 0.09 2.52 6.34 -51.93 -0.33 2.19 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 48 H 0.00 0.08 7.95 -51.93 -0.41 -0.33 16 49 H 0.06 1.43 3.50 -51.93 -0.18 1.25 16 50 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 51 H 0.09 1.80 7.14 -51.93 -0.37 1.42 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -37.85 381.63 -8.88 -46.73 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.13 Total: -1.56 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.49 Total: 0.19 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.30 Total: -54.02 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.68 Total: -16.70 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.03 Total: 19.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.85 -8.88 -46.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324555909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.967 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds