Wall clock time and date at job start Tue Mar 31 2020 17:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42897 * 109.46807 * 211.34956 * 3 2 1 5 5 C 1.42901 * 113.99891 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46946 * 329.99766 * 5 4 3 7 7 C 1.52995 * 109.47396 * 89.99811 * 5 4 3 8 8 C 1.50699 * 109.47179 * 210.00283 * 5 4 3 9 9 O 1.21277 * 120.00042 * 344.65696 * 8 5 4 10 10 N 1.34779 * 119.99939 * 164.66538 * 8 5 4 11 11 C 1.47556 * 118.63917 * 3.30686 * 10 8 5 12 12 C 1.53956 * 112.18144 * 137.87367 * 11 10 8 13 13 C 1.50873 * 110.19873 * 319.37067 * 12 11 10 14 14 C 1.52628 * 109.38661 * 91.80878 * 13 12 11 15 15 C 1.47075 * 114.24007 * 275.32865 * 14 13 12 16 16 C 1.54239 * 112.36710 * 183.87128 * 15 14 13 17 17 C 1.54406 * 104.94717 * 122.24457 * 16 15 14 18 18 N 1.48153 * 104.59687 * 23.93303 * 17 16 15 19 19 C 1.36944 * 127.84411 * 140.30704 * 18 17 16 20 20 H 1.08004 * 119.99531 * 191.50970 * 19 18 17 21 21 C 1.38809 * 120.00098 * 11.51082 * 19 18 17 22 22 N 1.31614 * 119.99983 * 12.68615 * 21 19 18 23 23 Si 1.86806 * 119.99818 * 192.68372 * 21 19 18 24 24 H 1.48506 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46959 * 119.99741 * 23 21 19 26 26 H 1.48494 * 109.47164 * 240.00029 * 23 21 19 27 27 C 1.48154 * 104.30568 * 320.33764 * 18 17 16 28 28 C 1.44595 * 118.63607 * 183.33128 * 10 8 5 29 29 H 4.38441 * 5.44467 * 179.97438 * 4 1 2 30 30 H 1.09007 * 109.47110 * 91.35135 * 3 2 1 31 31 H 1.08999 * 109.47032 * 331.34839 * 3 2 1 32 32 H 1.08999 * 109.47449 * 172.95153 * 7 5 4 33 33 H 1.09004 * 109.47509 * 292.95850 * 7 5 4 34 34 H 1.08999 * 109.46990 * 52.95590 * 7 5 4 35 35 H 1.08997 * 108.93787 * 17.17826 * 11 10 8 36 36 H 1.08999 * 108.86932 * 258.51935 * 11 10 8 37 37 H 1.09000 * 109.34946 * 199.14323 * 12 11 10 38 38 H 1.09001 * 109.34666 * 79.59134 * 12 11 10 39 39 H 1.08994 * 109.48409 * 331.83003 * 13 12 11 40 40 H 1.09006 * 109.48344 * 211.78432 * 13 12 11 41 41 H 1.09000 * 108.52743 * 154.10197 * 14 13 12 42 42 H 1.08997 * 108.52969 * 36.56341 * 14 13 12 43 43 H 1.09001 * 110.34470 * 241.10929 * 16 15 14 44 44 H 1.08996 * 110.34547 * 3.37315 * 16 15 14 45 45 H 1.09000 * 110.41330 * 142.71810 * 17 16 15 46 46 H 1.09007 * 110.41003 * 265.15647 * 17 16 15 47 47 H 0.97006 * 119.99628 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.41351 * 280.85372 * 27 18 17 49 49 H 1.08998 * 110.41250 * 158.40547 * 27 18 17 50 50 H 1.09000 * 109.47309 * 150.56865 * 28 10 8 51 51 H 1.08998 * 109.47700 * 30.56000 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1514 0.7009 5 6 4.5463 1.2488 0.7592 6 1 4.9794 0.2485 0.7511 7 6 5.0538 2.0341 -0.4518 8 6 4.9498 1.9606 2.0246 9 8 4.1260 2.5866 2.6574 10 7 6.2263 1.9018 2.4531 11 6 7.2194 1.1944 1.6221 12 6 8.5559 1.9543 1.5403 13 6 8.3052 3.4352 1.3978 14 6 8.2743 4.0793 2.7812 15 6 6.9674 4.0071 3.4518 16 6 6.9586 4.7524 4.8022 17 6 5.8341 5.8023 4.6703 18 7 4.9319 5.2545 3.6306 19 6 3.5629 5.2810 3.6073 20 1 3.0235 4.6852 2.8859 21 6 2.8686 6.0737 4.5109 22 7 3.5084 6.9817 5.2169 23 14 1.0262 5.8515 4.7249 24 1 0.5496 4.7729 3.8222 25 1 0.7323 5.4835 6.1332 26 1 0.3324 7.1209 4.3898 27 6 5.8471 4.6709 2.6223 28 6 6.5657 2.5340 3.7085 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0094 0.0251 -1.0274 31 1 3.0097 -0.9010 0.4927 32 1 6.1230 2.2166 -0.3445 33 1 4.8726 1.4590 -1.3599 34 1 4.5272 2.9865 -0.5139 35 1 6.8180 1.0753 0.6158 36 1 7.3989 0.2082 2.0501 37 1 9.1211 1.5991 0.6787 38 1 9.1315 1.7711 2.4476 39 1 7.3487 3.5958 0.9005 40 1 9.1029 3.8837 0.8056 41 1 8.5550 5.1278 2.6814 42 1 9.0143 3.5845 3.4102 43 1 6.7379 4.0608 5.6153 44 1 7.9173 5.2429 4.9705 45 1 5.3028 5.9111 5.6158 46 1 6.2442 6.7605 4.3513 47 1 3.0232 7.5354 5.8486 48 1 6.2588 5.4532 1.9846 49 1 5.3258 3.9252 2.0222 50 1 7.4003 2.0046 4.1680 51 1 5.7042 2.5032 4.3755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324555909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:12 Heat of formation + Delta-G solvation = 8.104025 kcal Electronic energy + Delta-G solvation = -31851.962065 eV Core-core repulsion = 27947.118753 eV Total energy + Delta-G solvation = -3904.843312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.10089 -39.90717 -38.53439 -37.52105 -35.14467 -34.38140 -34.16748 -32.67596 -31.88816 -30.34173 -28.11576 -27.89467 -27.57336 -26.38879 -24.87574 -24.14555 -22.25880 -21.61922 -20.40392 -19.68571 -19.29800 -18.86745 -18.11535 -17.76550 -17.02926 -16.81207 -16.44368 -16.39985 -15.97527 -15.82611 -15.47606 -15.08686 -14.85461 -14.58763 -14.46852 -14.03181 -13.83673 -13.72162 -13.59264 -13.34733 -13.15103 -13.05160 -12.94508 -12.80374 -12.69611 -12.54010 -12.38259 -12.06666 -11.95040 -11.73657 -11.67831 -11.61474 -11.51964 -11.41723 -11.19581 -11.05912 -11.04595 -10.71653 -10.61135 -10.24311 -9.37883 -8.76549 -7.81240 -5.08266 1.35998 1.36913 1.37508 1.51640 1.77171 1.78684 2.12525 2.52820 3.05239 3.35551 3.45150 3.63128 3.69904 3.88078 3.90175 3.91288 4.07335 4.09730 4.11050 4.21324 4.23379 4.40151 4.46852 4.48636 4.59383 4.60696 4.65192 4.70190 4.76631 4.83875 4.89155 4.95423 4.98181 5.05288 5.11892 5.17261 5.24437 5.27115 5.33177 5.38366 5.43673 5.52897 5.58918 5.61707 5.72174 5.76932 5.87700 6.08982 6.31382 6.54865 6.57746 7.15937 7.46863 7.84224 8.59966 9.32624 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007857 B = 0.006498 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.949129 B = 4308.015302 C = 7370.325801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.236 4.236 3 C 0.164 3.836 4 O -0.394 6.394 5 C 0.076 3.924 6 H 0.127 0.873 7 C -0.172 4.172 8 C 0.479 3.521 9 O -0.533 6.533 10 N -0.598 5.598 11 C 0.088 3.912 12 C -0.122 4.122 13 C -0.115 4.115 14 C -0.095 4.095 15 C -0.074 4.074 16 C -0.119 4.119 17 C 0.154 3.846 18 N -0.604 5.604 19 C -0.175 4.175 20 H 0.063 0.937 21 C -0.081 4.081 22 N -0.956 5.956 23 Si 0.961 3.039 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.132 3.868 28 C 0.145 3.855 29 H 0.250 0.750 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.048 0.952 46 H -0.011 1.011 47 H 0.242 0.758 48 H -0.012 1.012 49 H 0.067 0.933 50 H 0.101 0.899 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.582 -20.245 -13.786 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.236 4.236 3 C 0.090 3.910 4 O -0.314 6.314 5 C 0.016 3.984 6 H 0.145 0.855 7 C -0.229 4.229 8 C 0.267 3.733 9 O -0.409 6.409 10 N -0.333 5.333 11 C -0.033 4.033 12 C -0.160 4.160 13 C -0.153 4.153 14 C -0.132 4.132 15 C -0.077 4.077 16 C -0.159 4.159 17 C 0.028 3.972 18 N -0.326 5.326 19 C -0.305 4.305 20 H 0.081 0.919 21 C -0.272 4.272 22 N -0.608 5.608 23 Si 0.792 3.208 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.007 3.993 28 C 0.021 3.979 29 H 0.266 0.734 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.007 0.993 47 H 0.052 0.948 48 H 0.005 0.995 49 H 0.084 0.916 50 H 0.120 0.880 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.824 -19.724 -13.289 27.020 hybrid contribution -1.711 0.809 0.614 1.990 sum 11.113 -18.915 -12.675 25.336 Atomic orbital electron populations 1.25872 0.97039 0.97207 0.98974 1.23306 0.95365 1.02872 1.02074 1.19507 0.84233 0.88793 0.98514 1.88160 1.20873 1.45386 1.76967 1.22120 0.81893 1.01336 0.93055 0.85522 1.22399 1.02705 1.00610 0.97210 1.21184 0.83263 0.81477 0.87386 1.91006 1.51844 1.40514 1.57513 1.47732 1.07901 1.55416 1.22238 1.22568 0.89170 0.95687 0.95847 1.21761 0.95876 0.93771 1.04589 1.21076 1.01652 0.96691 0.95879 1.20381 0.94641 1.00938 0.97285 1.20990 0.95914 0.95490 0.95277 1.22652 0.98567 0.97988 0.96666 1.21446 0.89717 0.92504 0.93573 1.45042 1.00753 1.65852 1.20984 1.19196 0.81377 1.16474 1.13482 0.91937 1.25394 1.01265 0.98465 1.02070 1.70101 1.35019 1.24680 1.30980 0.85219 0.81794 0.76767 0.77036 1.20895 1.21814 1.21648 1.22116 0.90773 0.94574 0.91846 1.21364 0.99833 0.91496 0.85172 0.73400 0.87740 0.88582 0.88369 0.87881 0.94376 0.87971 0.89269 0.87466 0.90458 0.93626 0.90268 0.93747 0.89880 0.92414 0.90147 0.93306 0.99318 0.94832 0.99467 0.91553 0.88046 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 19.25 74.32 1.43 -2.69 16 2 C -0.24 -6.27 13.73 31.12 0.43 -5.84 16 3 C 0.16 3.54 6.22 70.18 0.44 3.97 16 4 O -0.39 -12.53 9.53 -130.41 -1.24 -13.77 16 5 C 0.08 1.84 2.27 29.85 0.07 1.91 16 6 H 0.13 1.76 6.99 -2.38 -0.02 1.75 16 7 C -0.17 -3.31 9.03 71.98 0.65 -2.66 16 8 C 0.48 16.26 5.10 87.66 0.45 16.71 16 9 O -0.53 -26.25 11.82 15.55 0.18 -26.07 16 10 N -0.60 -15.54 2.00 -818.33 -1.64 -17.18 16 11 C 0.09 1.15 5.35 86.50 0.46 1.61 16 12 C -0.12 -1.33 5.70 30.23 0.17 -1.15 16 13 C -0.12 -2.12 5.45 29.78 0.16 -1.96 16 14 C -0.09 -2.33 3.83 28.63 0.11 -2.22 16 15 C -0.07 -2.55 0.67 -52.51 -0.04 -2.58 16 16 C -0.12 -4.71 6.24 31.49 0.20 -4.51 16 17 C 0.15 8.31 5.98 86.54 0.52 8.83 16 18 N -0.60 -34.96 3.31 -688.06 -2.28 -37.24 16 19 C -0.18 -11.37 9.40 84.03 0.79 -10.58 16 20 H 0.06 4.26 6.82 -2.91 -0.02 4.24 16 21 C -0.08 -5.27 5.38 84.86 0.46 -4.81 16 22 N -0.96 -63.72 10.80 21.65 0.23 -63.48 16 23 Si 0.96 53.48 29.57 68.60 2.03 55.51 16 24 H -0.28 -15.82 7.11 99.48 0.71 -15.11 16 25 H -0.29 -15.87 7.11 99.48 0.71 -15.16 16 26 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 27 C 0.13 6.10 4.39 86.53 0.38 6.48 16 28 C 0.15 4.53 4.21 87.36 0.37 4.90 16 29 H 0.25 3.78 7.80 -4.41 -0.03 3.75 16 30 H 0.10 1.50 8.05 -2.38 -0.02 1.48 16 31 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 32 H 0.10 1.46 5.28 -2.39 -0.01 1.45 16 33 H 0.10 1.23 8.05 -2.38 -0.02 1.21 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 0.95 4.02 -2.39 -0.01 0.94 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.08 0.77 7.33 -2.39 -0.02 0.75 16 39 H 0.04 1.07 5.79 -2.39 -0.01 1.05 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.60 7.39 -2.39 -0.02 1.58 16 43 H 0.06 2.24 7.53 -2.39 -0.02 2.22 16 44 H 0.08 2.68 7.79 -2.39 -0.02 2.66 16 45 H 0.05 2.99 6.34 -2.39 -0.02 2.98 16 46 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 47 H 0.24 15.63 8.31 -92.70 -0.77 14.86 16 48 H -0.01 -0.60 7.95 -2.39 -0.02 -0.62 16 49 H 0.07 3.08 3.50 -2.39 -0.01 3.08 16 50 H 0.10 2.36 8.08 -2.39 -0.02 2.34 16 51 H 0.04 1.58 7.14 -2.39 -0.02 1.57 16 Total: -1.00 -94.47 381.63 5.25 -89.22 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.92 Total: 7.61 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 7.04 Total: 5.39 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -3.68 Total: -117.89 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.06 Total: -39.84 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.03 Total: 55.51 kcal Total: -94.47 5.25 -89.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324555909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.322 kcal (2) G-P(sol) polarization free energy of solvation -94.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds