Wall clock time and date at job start Tue Mar 31 2020 17:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47017 * 123.39116 * 3 2 1 5 5 C 1.42895 * 113.99806 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47543 * 29.99564 * 5 4 3 7 7 C 1.52996 * 109.47085 * 269.99558 * 5 4 3 8 8 C 1.50705 * 109.47386 * 149.99682 * 5 4 3 9 9 O 1.21277 * 119.99384 * 7.48210 * 8 5 4 10 10 N 1.34777 * 120.00256 * 187.48630 * 8 5 4 11 11 C 1.44573 * 118.72264 * 184.73415 * 10 8 5 12 12 C 1.54756 * 109.57212 * 270.61324 * 11 10 8 13 13 C 1.47062 * 110.56328 * 288.35179 * 12 11 10 14 14 C 1.52834 * 114.33701 * 62.91966 * 13 12 11 15 15 C 1.50702 * 109.20873 * 275.77576 * 14 13 12 16 16 C 1.53926 * 111.04156 * 213.27334 * 15 14 13 17 17 C 1.54472 * 104.84312 * 119.99472 * 16 15 14 18 18 N 1.48178 * 104.62846 * 23.82003 * 17 16 15 19 19 C 1.36930 * 127.80486 * 140.61839 * 18 17 16 20 20 H 1.08008 * 120.00074 * 195.44226 * 19 18 17 21 21 C 1.38807 * 120.00348 * 15.44594 * 19 18 17 22 22 N 1.31621 * 119.99941 * 8.99060 * 21 19 18 23 23 Si 1.86806 * 120.00354 * 188.99302 * 21 19 18 24 24 H 1.48490 * 109.47333 * 89.99859 * 23 21 19 25 25 H 1.48498 * 109.47274 * 210.00110 * 23 21 19 26 26 H 1.48508 * 109.46816 * 329.99632 * 23 21 19 27 27 C 1.48223 * 104.38833 * 320.65747 * 18 17 16 28 28 C 1.47601 * 118.72286 * 4.45859 * 10 8 5 29 29 H 4.38449 * 5.44495 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.46810 * 3.38552 * 3 2 1 31 31 H 1.09006 * 109.46816 * 243.38915 * 3 2 1 32 32 H 1.09001 * 109.47613 * 304.85756 * 7 5 4 33 33 H 1.09003 * 109.47188 * 64.86624 * 7 5 4 34 34 H 1.09007 * 109.47084 * 184.86319 * 7 5 4 35 35 H 1.08992 * 109.45696 * 30.64377 * 11 10 8 36 36 H 1.08996 * 109.45123 * 150.60617 * 11 10 8 37 37 H 1.09001 * 109.26127 * 48.63199 * 12 11 10 38 38 H 1.09004 * 109.25669 * 168.07140 * 12 11 10 39 39 H 1.08999 * 108.51280 * 184.17343 * 13 12 11 40 40 H 1.08994 * 108.50828 * 301.66509 * 13 12 11 41 41 H 1.09005 * 109.51680 * 35.69372 * 14 13 12 42 42 H 1.09000 * 109.51828 * 155.85476 * 14 13 12 43 43 H 1.08998 * 110.36490 * 238.83977 * 16 15 14 44 44 H 1.09008 * 110.36419 * 1.15247 * 16 15 14 45 45 H 1.09004 * 110.40716 * 142.60783 * 17 16 15 46 46 H 1.08998 * 110.41058 * 265.03107 * 17 16 15 47 47 H 0.97002 * 120.00290 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.41610 * 280.44583 * 27 18 17 49 49 H 1.08995 * 110.41906 * 157.98625 * 27 18 17 50 50 H 1.09006 * 108.96784 * 258.65841 * 28 10 8 51 51 H 1.09001 * 108.97284 * 17.34859 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.7423 -1.1249 5 6 4.5465 0.8056 -1.2187 6 1 4.9796 -0.0955 -0.7844 7 6 5.0537 2.0327 -0.4587 8 6 4.9504 0.9093 -2.6669 9 8 4.1050 1.0640 -3.5226 10 7 6.2511 0.8302 -3.0111 11 6 6.6175 1.0365 -4.3943 12 6 6.5799 -0.3148 -5.1477 13 6 7.7021 -1.1694 -4.7318 14 6 7.6790 -1.5653 -3.2558 15 6 8.3089 -0.4673 -2.4380 16 6 9.0504 -1.0428 -1.2180 17 6 10.5182 -0.5975 -1.4008 18 7 10.4402 0.6031 -2.2657 19 6 11.1773 1.7533 -2.1735 20 1 10.8596 2.6420 -2.6988 21 6 12.3330 1.7774 -1.4049 22 7 12.8176 0.6582 -0.9101 23 14 13.2004 3.3982 -1.0728 24 1 12.6586 4.0041 0.1699 25 1 14.6566 3.1564 -0.9115 26 1 12.9755 4.3227 -2.2131 27 6 9.3831 0.2780 -3.2526 28 6 7.2467 0.5424 -1.9602 29 1 -1.0502 0.0000 0.0003 30 1 3.0097 -1.0250 -0.0607 31 1 3.0091 0.4612 0.9189 32 1 4.5552 2.9256 -0.8360 33 1 4.8375 1.9172 0.6035 34 1 6.1299 2.1295 -0.6019 35 1 5.9147 1.7295 -4.8566 36 1 7.6239 1.4522 -4.4451 37 1 5.6407 -0.8227 -4.9284 38 1 6.6465 -0.1305 -6.2200 39 1 7.6869 -2.0779 -5.3339 40 1 8.6334 -0.6403 -4.9336 41 1 6.6479 -1.7128 -2.9344 42 1 8.2400 -2.4896 -3.1178 43 1 8.6408 -0.6302 -0.2960 44 1 8.9820 -2.1307 -1.2110 45 1 10.9612 -0.3439 -0.4376 46 1 11.0952 -1.3819 -1.8906 47 1 13.6250 0.6750 -0.3727 48 1 9.7805 -0.3661 -4.0371 49 1 8.9698 1.1907 -3.6817 50 1 7.7394 1.4719 -1.6748 51 1 6.7346 0.1328 -1.0895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324555911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:17 Heat of formation + Delta-G solvation = 21.793193 kcal Electronic energy + Delta-G solvation = -30879.441796 eV Core-core repulsion = 26975.192092 eV Total energy + Delta-G solvation = -3904.249705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.85707 -39.07762 -37.80635 -35.74461 -34.24189 -33.55745 -32.99498 -31.38997 -30.55868 -28.71003 -27.35677 -27.15981 -25.85122 -25.24044 -24.08723 -22.61411 -21.49629 -20.02902 -19.31943 -18.65096 -18.29955 -17.27109 -16.95249 -16.62564 -16.22979 -15.75020 -15.45404 -15.04103 -14.73513 -14.55536 -14.16441 -13.93869 -13.69390 -13.56510 -13.36356 -13.06302 -12.89904 -12.69532 -12.34090 -12.30505 -12.02447 -11.69802 -11.67457 -11.53115 -11.26138 -11.02221 -10.91709 -10.89185 -10.78834 -10.76473 -10.63672 -10.30490 -10.17103 -10.09761 -9.93379 -9.75136 -9.64724 -9.63197 -9.36258 -8.67359 -8.47005 -6.87636 -5.82764 -3.17203 2.15432 2.54982 2.64720 2.99997 3.34309 3.40542 3.41922 3.74362 4.23429 4.42416 4.46159 4.62361 4.81115 4.82323 4.92756 4.98829 5.00841 5.11987 5.19443 5.25018 5.33253 5.41708 5.48788 5.51071 5.56041 5.63619 5.69590 5.74442 5.79776 5.87834 5.92290 6.00004 6.04151 6.13887 6.18896 6.19466 6.30676 6.44452 6.46000 6.52403 6.61097 6.71445 6.76867 6.84984 6.90681 7.30877 7.32379 7.43224 7.51647 7.68655 8.18206 8.26080 9.07620 9.70789 10.47837 11.30728 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003317 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.156868 B = 8439.491249 C = 9214.501594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.189 4.189 3 C 0.168 3.832 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.089 0.911 7 C -0.177 4.177 8 C 0.511 3.489 9 O -0.526 6.526 10 N -0.595 5.595 11 C 0.110 3.890 12 C -0.126 4.126 13 C -0.140 4.140 14 C -0.093 4.093 15 C -0.084 4.084 16 C -0.132 4.132 17 C 0.156 3.844 18 N -0.596 5.596 19 C -0.225 4.225 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.915 5.915 23 Si 0.909 3.091 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.129 3.871 28 C 0.120 3.880 29 H 0.222 0.778 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.033 0.967 49 H 0.051 0.949 50 H 0.079 0.921 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.326 -3.991 1.033 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.189 4.189 3 C 0.093 3.907 4 O -0.271 6.271 5 C 0.010 3.990 6 H 0.107 0.893 7 C -0.235 4.235 8 C 0.298 3.702 9 O -0.401 6.401 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.164 4.164 13 C -0.177 4.177 14 C -0.131 4.131 15 C -0.086 4.086 16 C -0.172 4.172 17 C 0.031 3.969 18 N -0.319 5.319 19 C -0.354 4.354 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.739 3.261 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.003 3.997 28 C -0.002 4.002 29 H 0.239 0.761 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.629 -3.688 0.527 17.041 hybrid contribution 0.568 0.551 0.457 0.913 sum -16.061 -3.137 0.983 16.394 Atomic orbital electron populations 1.24953 0.95865 0.99867 0.98612 1.22460 0.93809 1.01048 1.01586 1.19187 0.85005 0.96435 0.90092 1.88103 1.19296 1.73652 1.46035 1.21985 0.82366 1.00243 0.94430 0.89329 1.22345 1.02953 0.97693 1.00474 1.20284 0.82662 0.77213 0.90065 1.90692 1.49851 1.48240 1.51364 1.47688 1.05969 1.69853 1.09301 1.21635 1.01893 0.97323 0.80465 1.21081 0.99285 0.96429 0.99630 1.20793 1.00527 0.99897 0.96453 1.21082 0.99976 0.97565 0.94516 1.21468 0.95053 0.94785 0.97332 1.22844 0.99742 0.98822 0.95765 1.21551 0.89912 0.88107 0.97373 1.45022 1.41376 1.15166 1.30374 1.18959 1.02115 0.87243 1.27057 0.90764 1.24866 0.96699 0.96992 1.01617 1.69898 1.22946 1.24411 1.38835 0.86176 0.78827 0.82891 0.78209 1.21542 1.21723 1.20602 1.22167 0.89354 0.96275 0.91886 1.22447 0.89398 0.99941 0.88396 0.76144 0.90644 0.90515 0.90973 0.91154 0.89837 0.90413 0.89267 0.92183 0.91367 0.92979 0.89816 0.92790 0.91766 0.92504 0.92349 0.89665 0.96317 0.93637 0.94924 0.93126 0.90276 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.19 -2.12 13.73 -37.12 -0.51 -2.63 16 3 C 0.17 1.71 6.22 34.37 0.21 1.92 16 4 O -0.35 -4.80 9.49 -55.03 -0.52 -5.32 16 5 C 0.07 0.85 2.29 -27.88 -0.06 0.79 16 6 H 0.09 0.87 6.44 -51.93 -0.33 0.53 16 7 C -0.18 -1.87 9.22 37.16 0.34 -1.52 16 8 C 0.51 7.63 6.99 -10.98 -0.08 7.55 16 9 O -0.53 -9.77 16.01 -14.24 -0.23 -10.00 16 10 N -0.59 -8.19 2.27 -172.49 -0.39 -8.59 16 11 C 0.11 1.50 5.28 -4.15 -0.02 1.47 16 12 C -0.13 -1.60 5.72 -28.66 -0.16 -1.76 16 13 C -0.14 -1.79 4.94 -29.67 -0.15 -1.94 16 14 C -0.09 -1.25 4.89 -27.97 -0.14 -1.38 16 15 C -0.08 -1.26 0.68 -154.03 -0.11 -1.37 16 16 C -0.13 -2.16 6.21 -25.48 -0.16 -2.32 16 17 C 0.16 3.43 5.90 -2.35 -0.01 3.41 16 18 N -0.60 -13.83 3.38 -168.93 -0.57 -14.40 16 19 C -0.23 -5.86 10.35 -15.06 -0.16 -6.02 16 20 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 21 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 22 N -0.91 -25.65 10.85 55.49 0.60 -25.05 16 23 Si 0.91 21.15 29.56 -169.99 -5.03 16.12 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 C 0.13 2.37 4.42 -2.55 -0.01 2.36 16 28 C 0.12 1.63 3.20 -2.84 -0.01 1.62 16 29 H 0.22 1.21 7.80 -54.08 -0.42 0.79 16 30 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.08 0.60 7.99 -51.93 -0.41 0.19 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.59 7.99 -51.93 -0.41 0.18 16 34 H 0.08 0.89 5.77 -51.92 -0.30 0.59 16 35 H 0.08 1.11 7.38 -51.93 -0.38 0.72 16 36 H 0.09 1.23 5.12 -51.93 -0.27 0.97 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.17 4.58 -51.93 -0.24 0.93 16 41 H 0.05 0.70 7.56 -51.93 -0.39 0.31 16 42 H 0.06 0.85 7.42 -51.93 -0.39 0.46 16 43 H 0.06 0.87 7.50 -51.93 -0.39 0.48 16 44 H 0.06 0.85 7.35 -51.92 -0.38 0.47 16 45 H 0.09 2.12 6.51 -51.93 -0.34 1.78 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.03 0.63 5.94 -51.93 -0.31 0.32 16 49 H 0.05 0.91 5.07 -51.93 -0.26 0.65 16 50 H 0.08 1.21 7.36 -51.93 -0.38 0.83 16 51 H 0.07 0.85 5.04 -51.93 -0.26 0.59 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -32.04 385.34 -8.83 -40.87 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.95 Total: 1.69 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.54 Total: -1.13 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.36 Total: -48.04 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.75 Total: -15.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.04 -8.83 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324555911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.661 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds