Wall clock time and date at job start Tue Mar 31 2020 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47017 * 123.39116 * 3 2 1 5 5 C 1.42895 * 113.99806 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47543 * 29.99564 * 5 4 3 7 7 C 1.52996 * 109.47085 * 269.99558 * 5 4 3 8 8 C 1.50705 * 109.47386 * 149.99682 * 5 4 3 9 9 O 1.21277 * 119.99384 * 7.48210 * 8 5 4 10 10 N 1.34777 * 120.00256 * 187.48630 * 8 5 4 11 11 C 1.44573 * 118.72264 * 184.73415 * 10 8 5 12 12 C 1.54756 * 109.57212 * 270.61324 * 11 10 8 13 13 C 1.47062 * 110.56328 * 288.35179 * 12 11 10 14 14 C 1.52834 * 114.33701 * 62.91966 * 13 12 11 15 15 C 1.50702 * 109.20873 * 275.77576 * 14 13 12 16 16 C 1.53926 * 111.04156 * 213.27334 * 15 14 13 17 17 C 1.54472 * 104.84312 * 119.99472 * 16 15 14 18 18 N 1.48178 * 104.62846 * 23.82003 * 17 16 15 19 19 C 1.36930 * 127.80486 * 140.61839 * 18 17 16 20 20 H 1.08008 * 120.00074 * 195.44226 * 19 18 17 21 21 C 1.38807 * 120.00348 * 15.44594 * 19 18 17 22 22 N 1.31621 * 119.99941 * 8.99060 * 21 19 18 23 23 Si 1.86806 * 120.00354 * 188.99302 * 21 19 18 24 24 H 1.48490 * 109.47333 * 89.99859 * 23 21 19 25 25 H 1.48498 * 109.47274 * 210.00110 * 23 21 19 26 26 H 1.48508 * 109.46816 * 329.99632 * 23 21 19 27 27 C 1.48223 * 104.38833 * 320.65747 * 18 17 16 28 28 C 1.47601 * 118.72286 * 4.45859 * 10 8 5 29 29 H 4.38449 * 5.44495 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.46810 * 3.38552 * 3 2 1 31 31 H 1.09006 * 109.46816 * 243.38915 * 3 2 1 32 32 H 1.09001 * 109.47613 * 304.85756 * 7 5 4 33 33 H 1.09003 * 109.47188 * 64.86624 * 7 5 4 34 34 H 1.09007 * 109.47084 * 184.86319 * 7 5 4 35 35 H 1.08992 * 109.45696 * 30.64377 * 11 10 8 36 36 H 1.08996 * 109.45123 * 150.60617 * 11 10 8 37 37 H 1.09001 * 109.26127 * 48.63199 * 12 11 10 38 38 H 1.09004 * 109.25669 * 168.07140 * 12 11 10 39 39 H 1.08999 * 108.51280 * 184.17343 * 13 12 11 40 40 H 1.08994 * 108.50828 * 301.66509 * 13 12 11 41 41 H 1.09005 * 109.51680 * 35.69372 * 14 13 12 42 42 H 1.09000 * 109.51828 * 155.85476 * 14 13 12 43 43 H 1.08998 * 110.36490 * 238.83977 * 16 15 14 44 44 H 1.09008 * 110.36419 * 1.15247 * 16 15 14 45 45 H 1.09004 * 110.40716 * 142.60783 * 17 16 15 46 46 H 1.08998 * 110.41058 * 265.03107 * 17 16 15 47 47 H 0.97002 * 120.00290 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.41610 * 280.44583 * 27 18 17 49 49 H 1.08995 * 110.41906 * 157.98625 * 27 18 17 50 50 H 1.09006 * 108.96784 * 258.65841 * 28 10 8 51 51 H 1.09001 * 108.97284 * 17.34859 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.7423 -1.1249 5 6 4.5465 0.8056 -1.2187 6 1 4.9796 -0.0955 -0.7844 7 6 5.0537 2.0327 -0.4587 8 6 4.9504 0.9093 -2.6669 9 8 4.1050 1.0640 -3.5226 10 7 6.2511 0.8302 -3.0111 11 6 6.6175 1.0365 -4.3943 12 6 6.5799 -0.3148 -5.1477 13 6 7.7021 -1.1694 -4.7318 14 6 7.6790 -1.5653 -3.2558 15 6 8.3089 -0.4673 -2.4380 16 6 9.0504 -1.0428 -1.2180 17 6 10.5182 -0.5975 -1.4008 18 7 10.4402 0.6031 -2.2657 19 6 11.1773 1.7533 -2.1735 20 1 10.8596 2.6420 -2.6988 21 6 12.3330 1.7774 -1.4049 22 7 12.8176 0.6582 -0.9101 23 14 13.2004 3.3982 -1.0728 24 1 12.6586 4.0041 0.1699 25 1 14.6566 3.1564 -0.9115 26 1 12.9755 4.3227 -2.2131 27 6 9.3831 0.2780 -3.2526 28 6 7.2467 0.5424 -1.9602 29 1 -1.0502 0.0000 0.0003 30 1 3.0097 -1.0250 -0.0607 31 1 3.0091 0.4612 0.9189 32 1 4.5552 2.9256 -0.8360 33 1 4.8375 1.9172 0.6035 34 1 6.1299 2.1295 -0.6019 35 1 5.9147 1.7295 -4.8566 36 1 7.6239 1.4522 -4.4451 37 1 5.6407 -0.8227 -4.9284 38 1 6.6465 -0.1305 -6.2200 39 1 7.6869 -2.0779 -5.3339 40 1 8.6334 -0.6403 -4.9336 41 1 6.6479 -1.7128 -2.9344 42 1 8.2400 -2.4896 -3.1178 43 1 8.6408 -0.6302 -0.2960 44 1 8.9820 -2.1307 -1.2110 45 1 10.9612 -0.3439 -0.4376 46 1 11.0952 -1.3819 -1.8906 47 1 13.6250 0.6750 -0.3727 48 1 9.7805 -0.3661 -4.0371 49 1 8.9698 1.1907 -3.6817 50 1 7.7394 1.4719 -1.6748 51 1 6.7346 0.1328 -1.0895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324555911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:16 Heat of formation + Delta-G solvation = 4.200926 kcal Electronic energy + Delta-G solvation = -30880.204654 eV Core-core repulsion = 26975.192092 eV Total energy + Delta-G solvation = -3905.012563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.01793 -40.24463 -38.85533 -37.15355 -35.32447 -34.72693 -34.27054 -32.57420 -31.95214 -30.22696 -28.41760 -28.09437 -27.36582 -26.48051 -25.27515 -23.92173 -22.86290 -21.47830 -20.31173 -19.53641 -19.49968 -18.75749 -18.12909 -17.79253 -17.28866 -16.89915 -16.59427 -16.36848 -16.08798 -15.78228 -15.51557 -15.09225 -15.03547 -14.69903 -14.57429 -14.25596 -13.95385 -13.78374 -13.54990 -13.43678 -13.21141 -13.13010 -12.95653 -12.80488 -12.58551 -12.53829 -12.42733 -12.15043 -12.06135 -11.91691 -11.70575 -11.61758 -11.55441 -11.50078 -11.30380 -11.06248 -10.97570 -10.80204 -10.58489 -10.41333 -9.63620 -8.77188 -7.84310 -5.18448 1.34743 1.49159 1.49676 1.52164 1.57788 1.82041 1.98986 2.52359 2.93890 3.34136 3.34766 3.58499 3.63950 3.72522 3.81131 3.87662 3.95692 4.02643 4.10097 4.12896 4.25438 4.26226 4.45989 4.48215 4.50767 4.55913 4.66343 4.67974 4.73867 4.76841 4.80935 4.88586 4.94975 5.01463 5.09817 5.11156 5.17056 5.21081 5.23195 5.32330 5.40119 5.42680 5.51235 5.58414 5.65333 5.70738 5.82899 5.98289 6.28148 6.33648 6.59819 7.10197 7.13216 7.78011 8.56064 9.28436 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003317 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.156868 B = 8439.491249 C = 9214.501594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.238 4.238 3 C 0.162 3.838 4 O -0.383 6.383 5 C 0.073 3.927 6 H 0.118 0.882 7 C -0.173 4.173 8 C 0.507 3.493 9 O -0.569 6.569 10 N -0.589 5.589 11 C 0.107 3.893 12 C -0.117 4.117 13 C -0.136 4.136 14 C -0.090 4.090 15 C -0.071 4.071 16 C -0.118 4.118 17 C 0.158 3.842 18 N -0.617 5.617 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.968 3.032 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.272 1.272 27 C 0.129 3.871 28 C 0.125 3.875 29 H 0.253 0.747 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.050 0.950 46 H -0.007 1.007 47 H 0.247 0.753 48 H 0.030 0.970 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.090 -4.532 1.718 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.238 4.238 3 C 0.087 3.913 4 O -0.302 6.302 5 C 0.013 3.987 6 H 0.136 0.864 7 C -0.230 4.230 8 C 0.296 3.704 9 O -0.448 6.448 10 N -0.321 5.321 11 C -0.016 4.016 12 C -0.155 4.155 13 C -0.173 4.173 14 C -0.127 4.127 15 C -0.073 4.073 16 C -0.157 4.157 17 C 0.033 3.967 18 N -0.341 5.341 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.797 3.203 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.197 1.197 27 C 0.005 3.995 28 C 0.004 3.996 29 H 0.269 0.731 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.011 0.989 47 H 0.056 0.944 48 H 0.047 0.953 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.409 -4.233 1.202 18.928 hybrid contribution 1.055 0.717 0.166 1.286 sum -17.354 -3.516 1.368 17.760 Atomic orbital electron populations 1.25868 0.96883 0.98387 0.97013 1.23110 0.94994 1.02540 1.03128 1.19465 0.84722 0.97241 0.89880 1.88062 1.19931 1.74481 1.47756 1.22042 0.82291 1.02032 0.92363 0.86442 1.22327 1.02459 0.96437 1.01777 1.20887 0.82267 0.76095 0.91188 1.90669 1.50915 1.50296 1.52877 1.47691 1.05881 1.69244 1.09307 1.21642 1.01257 0.97897 0.80819 1.21006 0.98684 0.95509 1.00329 1.20737 0.99689 1.00361 0.96521 1.21066 1.00431 0.96936 0.94314 1.21322 0.94270 0.95265 0.96432 1.22707 0.95577 1.00422 0.96975 1.21406 0.93163 0.87075 0.95082 1.45279 1.41930 1.14795 1.32134 1.19273 1.02061 0.88393 1.25967 0.90620 1.25566 0.97803 0.99674 1.02339 1.70080 1.23220 1.26116 1.39996 0.85233 0.77107 0.79752 0.78185 1.21216 1.22591 1.19687 1.22336 0.88957 0.96804 0.91447 1.22397 0.89153 0.98993 0.89097 0.73064 0.88989 0.88271 0.92484 0.88556 0.89984 0.91334 0.89659 0.93086 0.90057 0.91530 0.91094 0.91664 0.91087 0.90893 0.89902 0.93113 0.98946 0.94401 0.95256 0.92894 0.91763 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 19.25 74.32 1.43 -1.38 16 2 C -0.24 -4.98 13.73 31.12 0.43 -4.56 16 3 C 0.16 2.93 6.22 70.18 0.44 3.37 16 4 O -0.38 -9.82 9.49 -130.05 -1.23 -11.05 16 5 C 0.07 1.59 2.29 29.85 0.07 1.66 16 6 H 0.12 1.82 6.44 -2.39 -0.02 1.81 16 7 C -0.17 -3.24 9.22 71.98 0.66 -2.58 16 8 C 0.51 14.45 6.99 87.66 0.61 15.06 16 9 O -0.57 -20.98 16.01 15.91 0.25 -20.72 16 10 N -0.59 -15.29 2.27 -818.03 -1.86 -17.14 16 11 C 0.11 2.82 5.28 87.34 0.46 3.28 16 12 C -0.12 -2.78 5.72 29.35 0.17 -2.61 16 13 C -0.14 -3.20 4.94 28.69 0.14 -3.06 16 14 C -0.09 -2.13 4.89 29.79 0.15 -1.98 16 15 C -0.07 -1.97 0.68 -51.87 -0.04 -2.00 16 16 C -0.12 -3.58 6.21 31.41 0.20 -3.38 16 17 C 0.16 7.00 5.90 86.56 0.51 7.51 16 18 N -0.62 -28.79 3.38 -688.39 -2.33 -31.12 16 19 C -0.23 -11.94 10.35 84.03 0.87 -11.07 16 20 H 0.08 3.85 7.85 -2.91 -0.02 3.82 16 21 C -0.06 -3.26 5.40 84.86 0.46 -2.80 16 22 N -0.95 -54.49 10.85 21.65 0.24 -54.26 16 23 Si 0.97 43.99 29.56 68.60 2.03 46.02 16 24 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 27 C 0.13 4.65 4.42 86.40 0.38 5.03 16 28 C 0.13 3.10 3.20 86.56 0.28 3.38 16 29 H 0.25 2.07 7.80 -4.41 -0.03 2.03 16 30 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 31 H 0.10 1.27 7.99 -2.38 -0.02 1.25 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.31 7.99 -2.39 -0.02 1.29 16 34 H 0.08 1.56 5.77 -2.38 -0.01 1.55 16 35 H 0.07 1.95 7.38 -2.39 -0.02 1.93 16 36 H 0.09 2.31 5.12 -2.39 -0.01 2.30 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.88 4.58 -2.39 -0.01 1.87 16 41 H 0.06 1.45 7.56 -2.38 -0.02 1.44 16 42 H 0.07 1.63 7.42 -2.39 -0.02 1.61 16 43 H 0.07 2.01 7.50 -2.39 -0.02 2.00 16 44 H 0.08 2.15 7.35 -2.38 -0.02 2.13 16 45 H 0.05 2.58 6.51 -2.39 -0.02 2.57 16 46 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 47 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 48 H 0.03 1.11 5.94 -2.39 -0.01 1.09 16 49 H 0.05 1.88 5.07 -2.39 -0.01 1.86 16 50 H 0.06 1.85 7.36 -2.38 -0.02 1.83 16 51 H 0.10 1.97 5.04 -2.39 -0.01 1.96 16 Total: -1.00 -71.90 385.34 5.24 -66.67 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.93 Total: 17.74 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 7.21 Total: 3.87 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -3.95 Total: -102.52 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.98 Total: -31.78 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.90 5.24 -66.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324555911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.868 kcal (2) G-P(sol) polarization free energy of solvation -71.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds