Wall clock time and date at job start Tue Mar 31 2020 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46939 * 93.34517 * 3 2 1 5 5 C 1.42906 * 113.99505 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.47111 * 329.99692 * 5 4 3 7 7 C 1.52994 * 109.47275 * 90.00229 * 5 4 3 8 8 C 1.50705 * 109.46836 * 210.00102 * 5 4 3 9 9 O 1.21286 * 119.99581 * 350.07976 * 8 5 4 10 10 N 1.34747 * 120.00030 * 170.08258 * 8 5 4 11 11 C 1.43433 * 120.25747 * 355.32231 * 10 8 5 12 12 C 1.55187 * 115.16191 * 270.73217 * 11 10 8 13 13 C 1.55246 * 108.20818 * 335.16267 * 12 11 10 14 14 C 1.49623 * 110.37792 * 304.72670 * 13 12 11 15 15 C 1.51929 * 109.89540 * 100.99096 * 14 13 12 16 16 C 1.56801 * 106.71187 * 163.50391 * 15 14 13 17 17 C 1.54448 * 102.69139 * 282.17662 * 16 15 14 18 18 N 1.47210 * 107.06109 * 339.41044 * 17 16 15 19 19 C 1.36712 * 126.32586 * 173.46125 * 18 17 16 20 20 H 1.08001 * 119.99581 * 187.40590 * 19 18 17 21 21 C 1.38810 * 120.00362 * 7.39977 * 19 18 17 22 22 N 1.31622 * 119.99686 * 11.52390 * 21 19 18 23 23 Si 1.86800 * 120.00001 * 191.51722 * 21 19 18 24 24 H 1.48497 * 109.46823 * 94.93483 * 23 21 19 25 25 H 1.48500 * 109.47062 * 214.92666 * 23 21 19 26 26 H 1.48491 * 109.47373 * 334.92942 * 23 21 19 27 27 C 1.47507 * 107.54316 * 353.41448 * 18 17 16 28 28 C 1.46095 * 115.17046 * 285.61435 * 15 14 13 29 29 H 4.38439 * 5.44472 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.46840 * 333.34434 * 3 2 1 31 31 H 1.08996 * 109.46812 * 213.34880 * 3 2 1 32 32 H 1.08997 * 109.47546 * 170.49853 * 7 5 4 33 33 H 1.08998 * 109.47324 * 290.50248 * 7 5 4 34 34 H 1.09005 * 109.47617 * 50.50069 * 7 5 4 35 35 H 1.08878 * 108.38088 * 32.94157 * 11 10 8 36 36 H 1.09038 * 108.35436 * 149.93714 * 11 10 8 37 37 H 1.08651 * 109.77313 * 95.84484 * 12 11 10 38 38 H 1.08840 * 109.47877 * 215.37095 * 12 11 10 39 39 H 1.08368 * 108.87436 * 67.93367 * 13 12 11 40 40 H 1.09612 * 109.11941 * 186.10665 * 13 12 11 41 41 H 1.09897 * 109.15034 * 341.30507 * 14 13 12 42 42 H 1.09489 * 110.19259 * 223.00692 * 14 13 12 43 43 H 1.08544 * 110.50414 * 163.93542 * 16 15 14 44 44 H 1.08635 * 110.41929 * 40.58990 * 16 15 14 45 45 H 1.09132 * 109.83104 * 220.31738 * 17 16 15 46 46 H 1.09027 * 110.08430 * 99.04979 * 17 16 15 47 47 H 0.96993 * 119.99556 * 179.97438 * 22 21 19 48 48 H 1.08115 * 111.19395 * 153.73943 * 27 18 17 49 49 H 1.09837 * 108.78977 * 274.97414 * 27 18 17 50 50 H 1.09456 * 109.62348 * 170.87213 * 28 15 14 51 51 H 1.09505 * 109.56356 * 290.21014 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.0795 -1.3450 5 6 4.5469 0.0861 -1.4576 6 1 4.9793 0.5489 -0.5706 7 6 5.0553 -1.3515 -1.5822 8 6 4.9504 0.8695 -2.6802 9 8 4.1096 1.2185 -3.4815 10 7 6.2454 1.1820 -2.8830 11 6 7.2304 0.8601 -1.8913 12 6 7.4650 1.9533 -0.8151 13 6 7.0576 3.3241 -1.4193 14 6 7.8007 3.5732 -2.6939 15 6 6.9025 3.2755 -3.8825 16 6 7.5697 3.9487 -5.1316 17 6 7.1943 5.4366 -4.9562 18 7 6.0284 5.4849 -4.0586 19 6 5.4513 6.6107 -3.5406 20 1 4.6728 6.5251 -2.7969 21 6 5.8660 7.8639 -3.9703 22 7 6.6427 7.9734 -5.0272 23 14 5.3216 9.3947 -3.0485 24 1 6.3652 9.7767 -2.0636 25 1 5.1193 10.5067 -4.0117 26 1 4.0476 9.1176 -2.3377 27 6 5.5936 4.0958 -3.8195 28 6 6.6735 1.8573 -4.1485 29 1 -1.0500 -0.0002 0.0000 30 1 3.0097 -0.9176 0.4610 31 1 3.0089 0.8592 0.5649 32 1 6.1153 -1.3413 -1.8361 33 1 4.9138 -1.8704 -0.6342 34 1 4.4992 -1.8671 -2.3652 35 1 6.9312 -0.0627 -1.3970 36 1 8.1799 0.6800 -2.3963 37 1 6.8699 1.7342 0.0672 38 1 8.5170 1.9686 -0.5366 39 1 5.9843 3.3367 -1.5679 40 1 7.3190 4.1200 -0.7123 41 1 8.6803 2.9157 -2.7327 42 1 8.1534 4.6091 -2.7295 43 1 7.1482 3.5500 -6.0490 44 1 8.6473 3.8133 -5.1048 45 1 6.9328 5.8689 -5.9235 46 1 8.0283 5.9838 -4.5162 47 1 6.9321 8.8490 -5.3276 48 1 5.0829 4.0040 -2.8710 49 1 4.9262 3.7885 -4.6359 50 1 5.8952 1.7471 -4.9102 51 1 7.5970 1.3999 -4.5187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324555913.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:19 Heat of formation + Delta-G solvation = -2.399530 kcal Electronic energy + Delta-G solvation = -31071.003479 eV Core-core repulsion = 27165.704699 eV Total energy + Delta-G solvation = -3905.298780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94637 -40.25097 -38.72642 -37.48465 -35.20420 -34.37307 -34.14959 -32.80257 -31.79457 -30.36901 -28.36492 -28.06239 -27.58455 -25.87728 -25.64841 -24.16293 -22.26132 -21.74988 -20.23400 -19.83158 -19.40905 -18.90154 -18.19021 -17.56433 -17.01722 -16.98410 -16.56576 -16.48165 -16.19550 -15.65130 -15.48027 -15.18945 -14.90474 -14.74503 -14.56025 -14.07523 -13.97530 -13.89731 -13.71562 -13.42816 -13.24499 -13.00711 -12.88779 -12.78398 -12.72612 -12.50297 -12.41865 -12.13060 -12.05957 -12.02426 -11.74986 -11.69549 -11.58626 -11.54909 -11.14834 -11.13122 -11.07987 -10.76920 -10.72213 -10.34354 -9.58132 -8.89412 -7.89058 -5.22783 1.33038 1.39654 1.41521 1.50951 1.63434 1.79669 1.99824 2.46224 3.00272 3.27105 3.40855 3.58100 3.65533 3.76146 3.81440 3.91087 3.97505 4.06806 4.11849 4.15032 4.23488 4.28314 4.45489 4.47593 4.56065 4.61875 4.69540 4.70598 4.76003 4.76226 4.80821 4.87182 4.95562 4.97202 4.99013 5.00420 5.16120 5.20122 5.29717 5.32832 5.37973 5.39463 5.49358 5.61756 5.69250 5.69839 5.74919 6.02368 6.16307 6.55785 6.58105 7.06522 7.25238 7.73899 8.43988 9.21647 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.003770 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.199501 B = 7424.305049 C = 8733.758929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.238 4.238 3 C 0.164 3.836 4 O -0.390 6.390 5 C 0.073 3.927 6 H 0.115 0.885 7 C -0.168 4.168 8 C 0.505 3.495 9 O -0.575 6.575 10 N -0.592 5.592 11 C 0.083 3.917 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.079 4.079 15 C -0.073 4.073 16 C -0.125 4.125 17 C 0.183 3.817 18 N -0.617 5.617 19 C -0.241 4.241 20 H 0.066 0.934 21 C -0.061 4.061 22 N -0.946 5.946 23 Si 0.973 3.027 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.274 1.274 27 C 0.160 3.840 28 C 0.143 3.857 29 H 0.252 0.748 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.004 0.996 46 H 0.007 0.993 47 H 0.248 0.752 48 H 0.028 0.972 49 H -0.017 1.017 50 H 0.063 0.937 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 -24.113 13.106 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.089 3.911 4 O -0.310 6.310 5 C 0.012 3.988 6 H 0.132 0.868 7 C -0.225 4.225 8 C 0.293 3.707 9 O -0.454 6.454 10 N -0.324 5.324 11 C -0.040 4.040 12 C -0.167 4.167 13 C -0.153 4.153 14 C -0.116 4.116 15 C -0.075 4.075 16 C -0.164 4.164 17 C 0.058 3.942 18 N -0.342 5.342 19 C -0.370 4.370 20 H 0.084 0.916 21 C -0.255 4.255 22 N -0.594 5.594 23 Si 0.801 3.199 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.199 1.199 27 C 0.035 3.965 28 C 0.022 3.978 29 H 0.268 0.732 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.022 0.978 46 H 0.026 0.974 47 H 0.057 0.943 48 H 0.047 0.953 49 H 0.000 1.000 50 H 0.082 0.918 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.513 -23.715 12.499 27.036 hybrid contribution -0.928 1.999 -0.006 2.204 sum 2.584 -21.715 12.493 25.185 Atomic orbital electron populations 1.25873 0.96968 0.99667 0.96013 1.23219 0.95210 1.01891 1.03522 1.19460 0.84485 1.03429 0.83676 1.88087 1.20665 1.95181 1.27052 1.22118 0.81999 0.98104 0.96567 0.86792 1.22381 1.02957 0.92391 1.04804 1.21096 0.82394 0.79470 0.87765 1.90729 1.51404 1.54882 1.48341 1.47818 1.06640 1.58695 1.19243 1.21844 0.93237 0.98312 0.90566 1.22837 1.03473 0.92641 0.97726 1.21232 0.99219 0.98031 0.96769 1.20621 0.97492 1.00876 0.92603 1.20735 0.95164 0.94726 0.96871 1.23184 1.01218 0.94802 0.97169 1.20922 0.88140 0.92850 0.92243 1.44754 1.32787 1.00946 1.55762 1.19250 1.16521 0.84832 1.16439 0.91567 1.25562 1.01224 1.00079 0.98609 1.70180 1.41178 1.22637 1.25453 0.85136 0.77901 0.79154 0.77661 1.20906 1.21809 1.19882 1.21566 0.94459 0.84677 0.95796 1.20767 1.01579 0.89778 0.85672 0.73213 0.87345 0.89740 0.87994 0.88228 0.92612 0.87353 0.87937 0.90527 0.88396 0.94707 0.94269 0.88952 0.94607 0.91740 0.88574 0.97767 0.97444 0.94312 0.95327 0.99953 0.91807 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 19.25 74.32 1.43 -1.95 16 2 C -0.24 -5.59 13.73 31.13 0.43 -5.16 16 3 C 0.16 3.18 6.22 70.18 0.44 3.62 16 4 O -0.39 -10.61 9.50 -130.13 -1.24 -11.85 16 5 C 0.07 1.47 2.31 29.85 0.07 1.54 16 6 H 0.11 1.61 6.90 -2.39 -0.02 1.59 16 7 C -0.17 -2.02 9.08 71.98 0.65 -1.36 16 8 C 0.50 14.70 7.02 87.66 0.61 15.31 16 9 O -0.58 -24.10 16.08 15.80 0.25 -23.85 16 10 N -0.59 -13.54 1.99 -827.46 -1.64 -15.18 16 11 C 0.08 1.06 4.54 87.70 0.40 1.46 16 12 C -0.13 -1.89 6.20 32.12 0.20 -1.69 16 13 C -0.11 -3.18 5.10 30.28 0.15 -3.02 16 14 C -0.08 -2.35 4.02 29.16 0.12 -2.24 16 15 C -0.07 -2.46 0.51 -52.78 -0.03 -2.49 16 16 C -0.12 -4.54 5.67 32.42 0.18 -4.36 16 17 C 0.18 9.42 4.63 86.74 0.40 9.82 16 18 N -0.62 -34.29 3.11 -691.71 -2.15 -36.44 16 19 C -0.24 -14.66 10.26 84.07 0.86 -13.80 16 20 H 0.07 4.01 7.86 -2.91 -0.02 3.98 16 21 C -0.06 -3.69 5.42 84.86 0.46 -3.23 16 22 N -0.95 -59.50 10.74 21.65 0.23 -59.26 16 23 Si 0.97 48.32 29.57 68.60 2.03 50.35 16 24 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 27 C 0.16 7.58 5.70 86.73 0.49 8.08 16 28 C 0.14 3.84 4.62 83.63 0.39 4.22 16 29 H 0.25 2.86 7.80 -4.42 -0.03 2.83 16 30 H 0.11 1.25 8.12 -2.39 -0.02 1.24 16 31 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.10 0.75 5.70 -2.39 -0.01 0.74 16 33 H 0.10 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.11 0.73 4.26 -2.45 -0.01 0.72 16 36 H 0.10 0.85 7.75 -2.37 -0.02 0.83 16 37 H 0.08 0.90 7.82 -2.57 -0.02 0.88 16 38 H 0.10 1.03 8.13 -2.47 -0.02 1.01 16 39 H 0.03 1.20 5.35 -2.72 -0.01 1.19 16 40 H 0.04 1.17 8.19 -2.06 -0.02 1.16 16 41 H 0.09 1.97 7.32 -1.91 -0.01 1.96 16 42 H 0.04 1.37 6.99 -2.13 -0.01 1.36 16 43 H 0.06 2.25 8.00 -2.63 -0.02 2.23 16 44 H 0.10 2.83 7.96 -2.58 -0.02 2.81 16 45 H 0.00 0.25 7.29 -2.32 -0.02 0.23 16 46 H 0.01 0.41 7.63 -2.37 -0.02 0.39 16 47 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 48 H 0.03 1.43 6.10 -2.85 -0.02 1.41 16 49 H -0.02 -0.92 7.99 -1.94 -0.02 -0.93 16 50 H 0.06 2.11 7.05 -2.14 -0.02 2.09 16 51 H 0.12 2.19 8.02 -2.12 -0.02 2.17 16 Total: -1.00 -89.08 391.46 5.67 -83.41 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.91 Total: 8.06 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 7.26 Total: 4.75 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.56 Total: -110.88 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.98 Total: -35.69 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -89.08 5.67 -83.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324555913.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.015 kcal (2) G-P(sol) polarization free energy of solvation -89.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds