Wall clock time and date at job start Tue Mar 31 2020 17:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47233 * 36.28830 * 3 2 1 5 5 C 1.42902 * 113.99805 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.47066 * 30.00204 * 5 4 3 7 7 C 1.52999 * 109.47053 * 270.00005 * 5 4 3 8 8 C 1.50697 * 109.46854 * 150.00182 * 5 4 3 9 9 O 1.21285 * 120.00241 * 8.86763 * 8 5 4 10 10 N 1.35121 * 119.99949 * 188.86444 * 8 5 4 11 11 C 1.44430 * 118.20305 * 185.16373 * 10 8 5 12 12 C 1.54640 * 109.64616 * 269.54483 * 11 10 8 13 13 C 1.47181 * 110.15939 * 290.32465 * 12 11 10 14 14 C 1.52360 * 114.89475 * 64.57242 * 13 12 11 15 15 C 1.50290 * 111.52715 * 273.81209 * 14 13 12 16 16 C 1.53815 * 112.22990 * 321.49749 * 15 14 13 17 17 C 1.54862 * 103.73053 * 225.18819 * 16 15 14 18 18 N 1.48255 * 103.03039 * 35.32521 * 17 16 15 19 19 C 1.37016 * 127.61472 * 137.64985 * 18 17 16 20 20 H 1.07999 * 119.99787 * 348.29905 * 19 18 17 21 21 C 1.38815 * 120.00126 * 168.30632 * 19 18 17 22 22 N 1.31614 * 120.00279 * 350.38636 * 21 19 18 23 23 Si 1.86799 * 119.99932 * 170.39196 * 21 19 18 24 24 H 1.48502 * 109.47331 * 59.99883 * 23 21 19 25 25 H 1.48505 * 109.47345 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47383 * 299.99789 * 23 21 19 27 27 C 1.47917 * 104.57255 * 317.52387 * 18 17 16 28 28 C 1.47223 * 118.51080 * 4.45437 * 10 8 5 29 29 H 4.38445 * 5.44324 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.47294 * 276.28792 * 3 2 1 31 31 H 1.09002 * 109.46606 * 156.29075 * 3 2 1 32 32 H 1.09000 * 109.47291 * 60.01251 * 7 5 4 33 33 H 1.09004 * 109.46934 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47168 * 300.01040 * 7 5 4 35 35 H 1.09033 * 109.66718 * 29.81456 * 11 10 8 36 36 H 1.09017 * 109.46293 * 149.27883 * 11 10 8 37 37 H 1.08863 * 109.67111 * 50.68039 * 12 11 10 38 38 H 1.09061 * 109.30804 * 170.18070 * 12 11 10 39 39 H 1.09535 * 107.61179 * 184.90552 * 13 12 11 40 40 H 1.08591 * 108.10819 * 300.97569 * 13 12 11 41 41 H 1.09294 * 109.52898 * 35.32978 * 14 13 12 42 42 H 1.09648 * 108.90501 * 153.59870 * 14 13 12 43 43 H 1.08895 * 110.95990 * 342.67661 * 16 15 14 44 44 H 1.08702 * 110.97493 * 106.52733 * 16 15 14 45 45 H 1.08667 * 110.69472 * 153.91779 * 17 16 15 46 46 H 1.08864 * 110.32037 * 277.56325 * 17 16 15 47 47 H 0.96998 * 120.00558 * 180.02562 * 22 21 19 48 48 H 1.09132 * 110.48132 * 273.66286 * 27 18 17 49 49 H 1.09157 * 110.31084 * 151.95967 * 27 18 17 50 50 H 1.09337 * 108.77473 * 253.90046 * 28 10 8 51 51 H 1.09369 * 108.72007 * 11.16160 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0851 -0.7974 5 6 4.5474 -1.1750 -0.8646 6 1 4.9799 -0.7867 0.0575 7 6 5.0548 -0.3535 -2.0514 8 6 4.9520 -2.6158 -1.0414 9 8 4.1095 -3.4593 -1.2645 10 7 6.2533 -2.9681 -0.9513 11 6 6.6113 -4.3375 -1.2388 12 6 6.5610 -5.1721 0.0620 13 6 7.6577 -4.7774 0.9607 14 6 7.5803 -3.3459 1.4767 15 6 8.2162 -2.3789 0.5180 16 6 9.4881 -2.9528 -0.1293 17 6 10.5050 -1.7884 -0.0370 18 7 10.1634 -1.1481 1.2558 19 6 11.0267 -0.6880 2.2151 20 1 12.0757 -0.9394 2.1628 21 6 10.5531 0.1010 3.2543 22 7 9.3217 0.5645 3.2203 23 14 11.6635 0.5053 4.7010 24 1 12.8634 1.2334 4.2159 25 1 10.9259 1.3569 5.6685 26 1 12.0842 -0.7526 5.3688 27 6 8.6847 -1.1148 1.2754 28 6 7.2366 -1.9367 -0.5813 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0094 -0.1117 1.0214 31 1 3.0088 0.9418 -0.4132 32 1 4.7624 0.6887 -1.9235 33 1 6.1415 -0.4225 -2.1029 34 1 4.6222 -0.7417 -2.9735 35 1 5.9138 -4.7542 -1.9659 36 1 7.6181 -4.3699 -1.6555 37 1 5.6085 -5.0113 0.5641 38 1 6.6593 -6.2300 -0.1843 39 1 7.6369 -5.4505 1.8246 40 1 8.5963 -4.9387 0.4390 41 1 6.5345 -3.0708 1.6356 42 1 8.1019 -3.2866 2.4394 43 1 9.8609 -3.8066 0.4344 44 1 9.3094 -3.2205 -1.1676 45 1 11.5231 -2.1679 -0.0242 46 1 10.3539 -1.0886 -0.8571 47 1 8.9908 1.1161 3.9463 48 1 8.3162 -0.2193 0.7721 49 1 8.3187 -1.1402 2.3034 50 1 7.8091 -1.6610 -1.4711 51 1 6.7002 -1.0476 -0.2378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324555915.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:23 Heat of formation + Delta-G solvation = 11.752521 kcal Electronic energy + Delta-G solvation = -30902.421244 eV Core-core repulsion = 26997.736143 eV Total energy + Delta-G solvation = -3904.685101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.72138 -38.90985 -37.76506 -35.86317 -34.18091 -33.45751 -32.87435 -31.43810 -30.78428 -28.40481 -27.27665 -27.17606 -25.76650 -25.23562 -23.95684 -22.64468 -21.28164 -20.21112 -19.28363 -18.61161 -18.18927 -17.17455 -16.95216 -16.67542 -16.19551 -15.65903 -15.42527 -14.99814 -14.76797 -14.37697 -14.13205 -13.82929 -13.70005 -13.45572 -13.30567 -12.87749 -12.86314 -12.67090 -12.38322 -12.32235 -12.01636 -11.79732 -11.58777 -11.54438 -11.27514 -11.01419 -10.89067 -10.81122 -10.76335 -10.67983 -10.51472 -10.27659 -10.11673 -10.05341 -9.91197 -9.85776 -9.70659 -9.60556 -9.31954 -8.70407 -8.46173 -6.91575 -5.83357 -3.14992 2.24474 2.65224 2.66069 3.03373 3.35507 3.41099 3.41354 3.81592 4.31038 4.43535 4.52797 4.73920 4.86975 4.91781 5.01655 5.07081 5.10554 5.18600 5.25359 5.28500 5.33996 5.45249 5.49790 5.57018 5.58927 5.68407 5.70776 5.73720 5.85300 5.88143 5.90111 5.91817 6.00995 6.18458 6.21574 6.28114 6.31302 6.50642 6.52860 6.59023 6.67037 6.73062 6.82328 6.92306 6.94292 7.28020 7.40614 7.42553 7.46299 7.66996 8.15568 8.27039 9.08361 9.70966 10.46164 11.30861 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.003758 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.628281 B = 7448.677045 C = 8989.801070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.186 4.186 3 C 0.167 3.833 4 O -0.353 6.353 5 C 0.068 3.932 6 H 0.095 0.905 7 C -0.174 4.174 8 C 0.513 3.487 9 O -0.525 6.525 10 N -0.595 5.595 11 C 0.120 3.880 12 C -0.129 4.129 13 C -0.123 4.123 14 C -0.088 4.088 15 C -0.090 4.090 16 C -0.124 4.124 17 C 0.122 3.878 18 N -0.596 5.596 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.173 3.827 28 C 0.115 3.885 29 H 0.221 0.779 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.022 0.978 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.083 0.917 50 H 0.066 0.934 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -4.345 -8.819 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.186 4.186 3 C 0.091 3.909 4 O -0.272 6.272 5 C 0.007 3.993 6 H 0.112 0.888 7 C -0.231 4.231 8 C 0.300 3.700 9 O -0.400 6.400 10 N -0.329 5.329 11 C -0.003 4.003 12 C -0.168 4.168 13 C -0.160 4.160 14 C -0.126 4.126 15 C -0.093 4.093 16 C -0.163 4.163 17 C -0.005 4.005 18 N -0.320 5.320 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.046 3.954 28 C -0.007 4.007 29 H 0.238 0.762 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.599 -4.767 -8.803 13.869 hybrid contribution 0.578 0.551 0.972 1.258 sum -9.022 -4.216 -7.830 12.668 Atomic orbital electron populations 1.24916 0.95838 0.98936 0.99925 1.22476 0.93804 1.01365 1.00940 1.19222 0.84917 0.90835 0.95919 1.88076 1.19208 1.49533 1.70362 1.22001 0.82502 0.94111 1.00702 0.88773 1.22306 1.02498 1.00292 0.98034 1.20427 0.82587 0.89889 0.77121 1.90687 1.49847 1.51929 1.47546 1.47616 1.06479 1.10646 1.68153 1.21338 1.00978 0.80889 0.97075 1.21140 0.99891 0.99053 0.96667 1.20502 0.99313 0.97165 0.99056 1.20867 1.00143 0.92920 0.98652 1.21563 0.93837 0.99180 0.94693 1.22773 0.95836 0.99285 0.98427 1.21826 0.96420 0.92759 0.89456 1.44888 1.01559 1.70063 1.15483 1.18974 0.90466 1.24687 1.01135 0.90609 1.24801 0.97012 0.98655 0.99763 1.69868 1.15739 1.38001 1.32883 0.86242 0.79546 0.77875 0.82353 1.21107 1.21592 1.21168 1.21695 0.84420 0.89769 0.99477 1.22477 0.90790 0.89242 0.98172 0.76196 0.90311 0.90412 0.90986 0.90146 0.91205 0.90463 0.90559 0.91955 0.91573 0.93264 0.91358 0.92865 0.91349 0.91403 0.92632 0.93294 0.96066 0.93618 0.96267 0.89845 0.91615 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 19.25 29.55 0.57 -1.31 16 2 C -0.19 -2.31 13.73 -37.12 -0.51 -2.82 16 3 C 0.17 1.94 6.22 34.37 0.21 2.16 16 4 O -0.35 -5.14 9.49 -54.98 -0.52 -5.66 16 5 C 0.07 0.88 2.28 -27.88 -0.06 0.82 16 6 H 0.09 1.12 6.43 -51.93 -0.33 0.79 16 7 C -0.17 -1.85 9.20 37.16 0.34 -1.51 16 8 C 0.51 7.79 6.97 -10.83 -0.08 7.71 16 9 O -0.52 -9.80 15.97 -14.20 -0.23 -10.02 16 10 N -0.60 -8.03 2.27 -172.80 -0.39 -8.43 16 11 C 0.12 1.51 5.37 -4.28 -0.02 1.49 16 12 C -0.13 -1.63 5.76 -28.66 -0.17 -1.79 16 13 C -0.12 -1.65 4.82 -29.85 -0.14 -1.79 16 14 C -0.09 -1.39 4.35 -28.41 -0.12 -1.52 16 15 C -0.09 -1.45 0.62 -154.19 -0.10 -1.54 16 16 C -0.12 -1.92 4.66 -25.33 -0.12 -2.04 16 17 C 0.12 2.29 7.28 -2.09 -0.02 2.27 16 18 N -0.60 -13.99 3.37 -168.56 -0.57 -14.56 16 19 C -0.22 -5.91 10.36 -15.02 -0.16 -6.07 16 20 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 21 C -0.01 -0.15 5.42 -17.43 -0.09 -0.24 16 22 N -0.92 -25.38 10.82 55.49 0.60 -24.78 16 23 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.17 3.67 4.81 -2.41 -0.01 3.66 16 28 C 0.12 1.57 3.51 -3.26 -0.01 1.56 16 29 H 0.22 1.41 7.80 -54.10 -0.42 0.99 16 30 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.07 0.65 7.87 -51.93 -0.41 0.25 16 33 H 0.08 0.81 6.01 -51.93 -0.31 0.50 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.01 7.34 -51.91 -0.38 0.63 16 36 H 0.08 0.86 6.87 -51.92 -0.36 0.50 16 37 H 0.06 0.91 8.13 -52.01 -0.42 0.48 16 38 H 0.07 0.72 8.15 -51.89 -0.42 0.30 16 39 H 0.05 0.64 8.17 -51.63 -0.42 0.22 16 40 H 0.07 0.89 5.37 -52.16 -0.28 0.61 16 41 H 0.05 0.86 7.77 -51.76 -0.40 0.45 16 42 H 0.07 1.24 7.70 -51.56 -0.40 0.84 16 43 H 0.07 1.07 6.30 -51.99 -0.33 0.74 16 44 H 0.06 0.73 6.53 -52.10 -0.34 0.39 16 45 H 0.05 0.90 8.11 -52.12 -0.42 0.47 16 46 H 0.02 0.39 8.13 -52.01 -0.42 -0.03 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.02 0.43 7.30 -51.85 -0.38 0.05 16 49 H 0.08 2.04 6.00 -51.84 -0.31 1.73 16 50 H 0.07 0.84 7.35 -51.74 -0.38 0.46 16 51 H 0.08 1.10 4.23 -51.72 -0.22 0.88 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -31.88 389.21 -8.91 -40.79 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.16 Total: 1.59 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.48 Total: -0.98 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.36 Total: -47.77 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.75 Total: -15.69 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.88 -8.91 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324555915.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.540 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds