Wall clock time and date at job start Tue Mar 31 2020 17:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47233 * 36.28830 * 3 2 1 5 5 C 1.42902 * 113.99805 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.47066 * 30.00204 * 5 4 3 7 7 C 1.52999 * 109.47053 * 270.00005 * 5 4 3 8 8 C 1.50697 * 109.46854 * 150.00182 * 5 4 3 9 9 O 1.21285 * 120.00241 * 8.86763 * 8 5 4 10 10 N 1.35121 * 119.99949 * 188.86444 * 8 5 4 11 11 C 1.44430 * 118.20305 * 185.16373 * 10 8 5 12 12 C 1.54640 * 109.64616 * 269.54483 * 11 10 8 13 13 C 1.47181 * 110.15939 * 290.32465 * 12 11 10 14 14 C 1.52360 * 114.89475 * 64.57242 * 13 12 11 15 15 C 1.50290 * 111.52715 * 273.81209 * 14 13 12 16 16 C 1.53815 * 112.22990 * 321.49749 * 15 14 13 17 17 C 1.54862 * 103.73053 * 225.18819 * 16 15 14 18 18 N 1.48255 * 103.03039 * 35.32521 * 17 16 15 19 19 C 1.37016 * 127.61472 * 137.64985 * 18 17 16 20 20 H 1.07999 * 119.99787 * 348.29905 * 19 18 17 21 21 C 1.38815 * 120.00126 * 168.30632 * 19 18 17 22 22 N 1.31614 * 120.00279 * 350.38636 * 21 19 18 23 23 Si 1.86799 * 119.99932 * 170.39196 * 21 19 18 24 24 H 1.48502 * 109.47331 * 59.99883 * 23 21 19 25 25 H 1.48505 * 109.47345 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47383 * 299.99789 * 23 21 19 27 27 C 1.47917 * 104.57255 * 317.52387 * 18 17 16 28 28 C 1.47223 * 118.51080 * 4.45437 * 10 8 5 29 29 H 4.38445 * 5.44324 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.47294 * 276.28792 * 3 2 1 31 31 H 1.09002 * 109.46606 * 156.29075 * 3 2 1 32 32 H 1.09000 * 109.47291 * 60.01251 * 7 5 4 33 33 H 1.09004 * 109.46934 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47168 * 300.01040 * 7 5 4 35 35 H 1.09033 * 109.66718 * 29.81456 * 11 10 8 36 36 H 1.09017 * 109.46293 * 149.27883 * 11 10 8 37 37 H 1.08863 * 109.67111 * 50.68039 * 12 11 10 38 38 H 1.09061 * 109.30804 * 170.18070 * 12 11 10 39 39 H 1.09535 * 107.61179 * 184.90552 * 13 12 11 40 40 H 1.08591 * 108.10819 * 300.97569 * 13 12 11 41 41 H 1.09294 * 109.52898 * 35.32978 * 14 13 12 42 42 H 1.09648 * 108.90501 * 153.59870 * 14 13 12 43 43 H 1.08895 * 110.95990 * 342.67661 * 16 15 14 44 44 H 1.08702 * 110.97493 * 106.52733 * 16 15 14 45 45 H 1.08667 * 110.69472 * 153.91779 * 17 16 15 46 46 H 1.08864 * 110.32037 * 277.56325 * 17 16 15 47 47 H 0.96998 * 120.00558 * 180.02562 * 22 21 19 48 48 H 1.09132 * 110.48132 * 273.66286 * 27 18 17 49 49 H 1.09157 * 110.31084 * 151.95967 * 27 18 17 50 50 H 1.09337 * 108.77473 * 253.90046 * 28 10 8 51 51 H 1.09369 * 108.72007 * 11.16160 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0851 -0.7974 5 6 4.5474 -1.1750 -0.8646 6 1 4.9799 -0.7867 0.0575 7 6 5.0548 -0.3535 -2.0514 8 6 4.9520 -2.6158 -1.0414 9 8 4.1095 -3.4593 -1.2645 10 7 6.2533 -2.9681 -0.9513 11 6 6.6113 -4.3375 -1.2388 12 6 6.5610 -5.1721 0.0620 13 6 7.6577 -4.7774 0.9607 14 6 7.5803 -3.3459 1.4767 15 6 8.2162 -2.3789 0.5180 16 6 9.4881 -2.9528 -0.1293 17 6 10.5050 -1.7884 -0.0370 18 7 10.1634 -1.1481 1.2558 19 6 11.0267 -0.6880 2.2151 20 1 12.0757 -0.9394 2.1628 21 6 10.5531 0.1010 3.2543 22 7 9.3217 0.5645 3.2203 23 14 11.6635 0.5053 4.7010 24 1 12.8634 1.2334 4.2159 25 1 10.9259 1.3569 5.6685 26 1 12.0842 -0.7526 5.3688 27 6 8.6847 -1.1148 1.2754 28 6 7.2366 -1.9367 -0.5813 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0094 -0.1117 1.0214 31 1 3.0088 0.9418 -0.4132 32 1 4.7624 0.6887 -1.9235 33 1 6.1415 -0.4225 -2.1029 34 1 4.6222 -0.7417 -2.9735 35 1 5.9138 -4.7542 -1.9659 36 1 7.6181 -4.3699 -1.6555 37 1 5.6085 -5.0113 0.5641 38 1 6.6593 -6.2300 -0.1843 39 1 7.6369 -5.4505 1.8246 40 1 8.5963 -4.9387 0.4390 41 1 6.5345 -3.0708 1.6356 42 1 8.1019 -3.2866 2.4394 43 1 9.8609 -3.8066 0.4344 44 1 9.3094 -3.2205 -1.1676 45 1 11.5231 -2.1679 -0.0242 46 1 10.3539 -1.0886 -0.8571 47 1 8.9908 1.1161 3.9463 48 1 8.3162 -0.2193 0.7721 49 1 8.3187 -1.1402 2.3034 50 1 7.8091 -1.6610 -1.4711 51 1 6.7002 -1.0476 -0.2378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324555915.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:22 Heat of formation + Delta-G solvation = -5.452299 kcal Electronic energy + Delta-G solvation = -30903.167301 eV Core-core repulsion = 26997.736143 eV Total energy + Delta-G solvation = -3905.431158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.90189 -40.16143 -38.89679 -37.24455 -35.29888 -34.64432 -34.29747 -32.76277 -32.02218 -29.98667 -28.49230 -28.13077 -27.23480 -26.50866 -25.27620 -23.89191 -22.63272 -21.69485 -20.32863 -19.56027 -19.47267 -18.76449 -18.19809 -17.85080 -17.30972 -16.74165 -16.67828 -16.35885 -16.09223 -15.68439 -15.60994 -15.09922 -14.87359 -14.66774 -14.44820 -14.24968 -13.97943 -13.87530 -13.62018 -13.48455 -13.27063 -13.08707 -12.95066 -12.75009 -12.67616 -12.59693 -12.46299 -12.13438 -12.00538 -11.77918 -11.73013 -11.64284 -11.57596 -11.55596 -11.31718 -11.19677 -10.98260 -10.80123 -10.64053 -10.44101 -9.62108 -8.80586 -7.84585 -5.15784 1.32327 1.48470 1.50055 1.50444 1.56163 1.79413 1.98976 2.52729 2.90319 3.31968 3.37077 3.58177 3.61807 3.74320 3.85042 3.90042 3.95240 4.00211 4.12639 4.16439 4.22966 4.28617 4.40122 4.40451 4.48899 4.63122 4.66446 4.67647 4.72989 4.74389 4.81863 4.93395 4.96988 4.99183 5.03973 5.12213 5.16519 5.21794 5.24966 5.29662 5.35277 5.44034 5.52256 5.59951 5.66119 5.73752 5.82936 5.94549 6.25892 6.30076 6.57205 7.11354 7.11969 7.79162 8.54885 9.28226 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.003758 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.628281 B = 7448.677045 C = 8989.801070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.240 4.240 3 C 0.162 3.838 4 O -0.380 6.380 5 C 0.066 3.934 6 H 0.101 0.899 7 C -0.167 4.167 8 C 0.510 3.490 9 O -0.565 6.565 10 N -0.587 5.587 11 C 0.115 3.885 12 C -0.123 4.123 13 C -0.115 4.115 14 C -0.082 4.082 15 C -0.076 4.076 16 C -0.110 4.110 17 C 0.117 3.883 18 N -0.622 5.622 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.060 4.060 22 N -0.944 5.944 23 Si 0.967 3.033 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.282 1.282 27 C 0.180 3.820 28 C 0.120 3.880 29 H 0.257 0.743 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.032 0.968 47 H 0.246 0.754 48 H 0.004 0.996 49 H 0.042 0.958 50 H 0.089 0.911 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 -5.077 -10.428 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.240 4.240 3 C 0.087 3.913 4 O -0.299 6.299 5 C 0.006 3.994 6 H 0.118 0.882 7 C -0.225 4.225 8 C 0.297 3.703 9 O -0.443 6.443 10 N -0.319 5.319 11 C -0.008 4.008 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.120 4.120 15 C -0.078 4.078 16 C -0.149 4.149 17 C -0.009 4.009 18 N -0.346 5.346 19 C -0.362 4.362 20 H 0.096 0.904 21 C -0.254 4.254 22 N -0.592 5.592 23 Si 0.796 3.204 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.208 1.208 27 C 0.054 3.946 28 C -0.001 4.001 29 H 0.273 0.727 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.022 0.978 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.138 -5.515 -10.436 14.927 hybrid contribution 0.420 0.772 1.480 1.721 sum -8.718 -4.743 -8.956 13.368 Atomic orbital electron populations 1.25866 0.96781 0.96939 0.97947 1.23019 0.94820 1.03289 1.02856 1.19395 0.85070 0.90940 0.95932 1.88030 1.19953 1.50911 1.71015 1.22098 0.82230 0.93110 1.02003 0.88189 1.22284 1.02838 1.00738 0.96617 1.20854 0.82617 0.90498 0.76283 1.90662 1.50879 1.53154 1.49622 1.47602 1.05926 1.11137 1.67260 1.21508 1.02223 0.80091 0.96936 1.21086 0.98155 1.00599 0.96272 1.20413 1.00276 0.95038 0.99518 1.20778 0.98948 0.94902 0.97396 1.21337 0.94948 0.96639 0.94879 1.22709 0.93878 0.97746 1.00528 1.22044 0.97685 0.93626 0.87497 1.45179 1.02251 1.70228 1.16971 1.19309 0.91110 1.23895 1.01839 0.90447 1.25502 0.98296 0.99447 1.02116 1.70048 1.17105 1.38897 1.33169 0.85322 0.78059 0.77468 0.79511 1.20373 1.22298 1.20837 1.21515 0.83636 0.91711 0.97749 1.22378 0.90541 0.89141 0.98088 0.72713 0.90062 0.88372 0.89333 0.89254 0.91654 0.90778 0.88076 0.94351 0.89136 0.92969 0.89980 0.93875 0.94497 0.91311 0.88868 0.92932 0.95035 0.94442 0.97776 0.93922 0.89331 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 19.25 74.32 1.43 -1.71 16 2 C -0.24 -5.93 13.73 31.13 0.43 -5.50 16 3 C 0.16 3.80 6.22 70.18 0.44 4.23 16 4 O -0.38 -11.15 9.49 -130.09 -1.24 -12.38 16 5 C 0.07 1.69 2.28 29.85 0.07 1.76 16 6 H 0.10 2.38 6.43 -2.39 -0.02 2.36 16 7 C -0.17 -3.32 9.20 71.98 0.66 -2.66 16 8 C 0.51 15.18 6.97 87.60 0.61 15.79 16 9 O -0.56 -21.15 15.97 15.84 0.25 -20.90 16 10 N -0.59 -14.80 2.27 -818.81 -1.86 -16.66 16 11 C 0.11 2.58 5.37 87.32 0.47 3.05 16 12 C -0.12 -2.84 5.76 29.34 0.17 -2.67 16 13 C -0.12 -2.86 4.82 28.57 0.14 -2.72 16 14 C -0.08 -2.59 4.35 29.51 0.13 -2.46 16 15 C -0.08 -2.33 0.62 -51.97 -0.03 -2.37 16 16 C -0.11 -3.06 4.66 31.50 0.15 -2.91 16 17 C 0.12 4.13 7.28 86.68 0.63 4.76 16 18 N -0.62 -29.14 3.37 -687.21 -2.32 -31.46 16 19 C -0.23 -12.32 10.36 84.02 0.87 -11.44 16 20 H 0.08 3.96 7.85 -2.91 -0.02 3.93 16 21 C -0.06 -3.25 5.42 84.86 0.46 -2.80 16 22 N -0.94 -53.81 10.82 21.65 0.23 -53.57 16 23 Si 0.97 44.21 29.56 68.60 2.03 46.24 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 C 0.18 7.75 4.81 86.66 0.42 8.17 16 28 C 0.12 3.03 3.51 86.49 0.30 3.34 16 29 H 0.26 2.61 7.80 -4.43 -0.03 2.58 16 30 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 31 H 0.10 1.80 7.87 -2.39 -0.02 1.78 16 32 H 0.09 1.45 7.87 -2.39 -0.02 1.43 16 33 H 0.09 1.59 6.01 -2.38 -0.01 1.57 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.78 7.34 -2.37 -0.02 1.76 16 36 H 0.10 1.79 6.87 -2.38 -0.02 1.78 16 37 H 0.04 1.08 8.13 -2.46 -0.02 1.06 16 38 H 0.09 1.70 8.15 -2.35 -0.02 1.68 16 39 H 0.05 1.28 8.17 -2.10 -0.02 1.26 16 40 H 0.08 1.85 5.37 -2.60 -0.01 1.83 16 41 H 0.04 1.42 7.77 -2.23 -0.02 1.40 16 42 H 0.04 1.38 7.70 -2.04 -0.02 1.36 16 43 H 0.07 1.94 6.30 -2.44 -0.02 1.93 16 44 H 0.09 1.95 6.53 -2.54 -0.02 1.93 16 45 H 0.05 1.81 8.11 -2.56 -0.02 1.79 16 46 H 0.03 1.07 8.13 -2.46 -0.02 1.05 16 47 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 48 H 0.00 0.20 7.30 -2.32 -0.02 0.18 16 49 H 0.04 2.18 6.00 -2.30 -0.01 2.16 16 50 H 0.09 1.91 7.35 -2.21 -0.02 1.90 16 51 H 0.08 2.13 4.23 -2.19 -0.01 2.12 16 Total: -1.00 -71.69 389.21 5.36 -66.33 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.92 Total: 18.54 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 7.34 Total: 3.87 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.94 Total: -101.69 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.98 Total: -33.28 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.69 5.36 -66.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324555915.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.873 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds