Wall clock time and date at job start Tue Mar 31 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47364 * 2 1 4 4 O 1.42900 * 109.47451 * 120.00477 * 2 1 3 5 5 C 1.42900 * 113.99894 * 149.99416 * 4 2 1 6 6 H 1.08998 * 109.47060 * 30.00462 * 5 4 2 7 7 C 1.50705 * 109.46716 * 150.00172 * 5 4 2 8 8 O 1.21282 * 119.99917 * 5.00521 * 7 5 4 9 9 N 1.34775 * 120.00048 * 184.99728 * 7 5 4 10 10 C 1.46498 * 120.00243 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47326 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46984 * 64.99727 * 11 10 9 13 13 C 1.52988 * 109.47188 * 185.00134 * 11 10 9 14 14 N 1.46507 * 109.46502 * 305.00193 * 11 10 9 15 15 C 1.46494 * 119.99793 * 299.99418 * 14 11 10 16 16 C 1.36933 * 119.99608 * 120.00358 * 14 11 10 17 17 H 1.07996 * 120.00464 * 19.01261 * 16 14 11 18 18 C 1.38816 * 119.99541 * 199.00613 * 16 14 11 19 19 N 1.31619 * 120.00294 * 14.85301 * 18 16 14 20 20 Si 1.86800 * 120.00036 * 194.84872 * 18 16 14 21 21 H 1.48492 * 109.47286 * 84.98992 * 20 18 16 22 22 H 1.48506 * 109.47182 * 204.99324 * 20 18 16 23 23 H 1.48505 * 109.47007 * 324.99033 * 20 18 16 24 24 C 1.50695 * 109.47214 * 269.99958 * 5 4 2 25 25 C 1.38239 * 119.99906 * 145.00517 * 24 5 4 26 26 C 1.38237 * 120.00155 * 180.02562 * 25 24 5 27 27 C 1.38231 * 119.99872 * 359.95265 * 26 25 24 28 28 C 1.38241 * 120.00222 * 0.02562 * 27 26 25 29 29 C 1.38236 * 119.99909 * 0.06838 * 28 27 26 30 30 H 1.09006 * 109.46878 * 299.99656 * 1 2 3 31 31 H 1.09000 * 109.47137 * 59.99290 * 1 2 3 32 32 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46878 * 240.00344 * 2 1 3 34 34 H 1.09006 * 109.46842 * 60.00322 * 3 2 1 35 35 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47573 * 300.00443 * 3 2 1 37 37 H 0.97004 * 119.99525 * 0.02562 * 9 7 5 38 38 H 1.09004 * 109.47240 * 300.00410 * 10 9 7 39 39 H 1.09001 * 109.46827 * 60.00155 * 10 9 7 40 40 H 1.09000 * 109.47546 * 299.99679 * 13 11 10 41 41 H 1.09003 * 109.47490 * 59.99903 * 13 11 10 42 42 H 1.09005 * 109.47624 * 179.97438 * 13 11 10 43 43 H 1.09005 * 109.47011 * 95.16673 * 15 14 11 44 44 H 1.09007 * 109.47004 * 215.15888 * 15 14 11 45 45 H 1.08999 * 109.47629 * 335.16015 * 15 14 11 46 46 H 0.96990 * 120.00229 * 179.97438 * 19 18 16 47 47 H 1.07998 * 119.99835 * 359.97438 * 25 24 5 48 48 H 1.07992 * 120.00066 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00094 * 179.72324 * 27 26 25 50 50 H 1.07999 * 119.99864 * 179.97438 * 28 27 26 51 51 H 1.07992 * 120.00071 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9884 6 1 3.8530 -0.7831 0.2466 7 6 4.0098 -1.3469 2.2989 8 8 3.4748 -0.9364 3.3069 9 7 5.2695 -1.8233 2.3507 10 6 5.9928 -1.8444 3.6245 11 6 7.3905 -2.4279 3.4078 12 1 7.9648 -1.7645 2.7610 13 6 8.1002 -2.5659 4.7560 14 7 7.2771 -3.7459 2.7783 15 6 6.5462 -4.8202 3.4548 16 6 7.8546 -3.9736 1.5577 17 1 8.6336 -3.3178 1.1980 18 6 7.4387 -5.0476 0.7827 19 7 6.3132 -5.6678 1.0673 20 14 8.4764 -5.6126 -0.6641 21 1 9.5260 -6.5476 -0.1853 22 1 7.6114 -6.3041 -1.6536 23 1 9.1167 -4.4352 -1.3038 24 6 3.0389 -2.7373 0.5155 25 6 3.9228 -3.3189 -0.3741 26 6 3.7143 -4.6147 -0.8083 27 6 2.6224 -5.3291 -0.3521 28 6 1.7387 -4.7477 0.5380 29 6 1.9462 -3.4513 0.9706 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 5.6975 -2.1514 1.5444 38 1 6.0793 -0.8286 4.0102 39 1 5.4488 -2.4600 4.3410 40 1 8.1846 -1.5853 5.2244 41 1 7.5259 -3.2292 5.4028 42 1 9.0959 -2.9820 4.6017 43 1 5.5199 -4.8480 3.0885 44 1 7.0310 -5.7747 3.2497 45 1 6.5437 -4.6375 4.5293 46 1 6.0225 -6.4180 0.5256 47 1 4.7758 -2.7607 -0.7306 48 1 4.4046 -5.0689 -1.5036 49 1 2.4570 -6.3399 -0.6947 50 1 0.8854 -5.3059 0.8940 51 1 1.2556 -2.9970 1.6656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329628196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:51 Heat of formation + Delta-G solvation = -35.886051 kcal Electronic energy + Delta-G solvation = -31154.562575 eV Core-core repulsion = 27247.811711 eV Total energy + Delta-G solvation = -3906.750865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.96282 -38.29358 -37.68708 -36.55935 -33.63439 -33.12399 -32.04142 -30.89969 -30.33284 -29.26869 -27.44179 -26.96163 -26.00609 -24.92071 -22.98709 -22.20881 -21.63740 -20.90169 -19.75477 -19.25823 -16.96972 -16.94826 -16.82637 -16.49786 -15.40382 -15.28590 -15.01083 -14.64012 -14.28309 -14.25725 -13.93665 -13.76146 -13.49115 -12.92396 -12.83320 -12.72009 -12.62225 -12.46459 -12.25947 -12.19257 -12.10577 -11.98739 -11.85157 -11.60323 -11.54434 -11.08540 -10.85703 -10.80108 -10.75175 -10.70475 -10.47888 -10.39065 -10.29752 -9.83343 -9.78503 -9.74783 -9.22221 -8.57754 -8.35474 -8.32563 -8.20140 -6.81938 -5.71814 -3.16233 1.76402 1.97509 3.12825 3.31373 3.32229 3.38883 3.41839 4.15001 4.42508 4.46575 4.86338 4.94538 5.01269 5.18722 5.21971 5.37170 5.38409 5.42343 5.46507 5.51330 5.53646 5.60533 5.62609 5.67952 5.76074 5.81850 5.95663 5.97317 6.10301 6.12060 6.14331 6.16231 6.19059 6.36799 6.40578 6.41477 6.53805 6.70609 6.82053 6.91707 6.92230 6.95191 7.05645 7.14772 7.34147 7.43597 7.49134 7.73963 7.82559 8.23920 8.34743 8.84117 9.21157 9.85104 10.34365 11.29698 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010562 B = 0.005049 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.319977 B = 5543.921747 C = 6971.846831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 C -0.175 4.175 4 O -0.344 6.344 5 C 0.121 3.879 6 H 0.085 0.915 7 C 0.517 3.483 8 O -0.541 6.541 9 N -0.695 5.695 10 C 0.110 3.890 11 C 0.159 3.841 12 H 0.067 0.933 13 C -0.158 4.158 14 N -0.592 5.592 15 C 0.166 3.834 16 C -0.264 4.264 17 H 0.066 0.934 18 C 0.012 3.988 19 N -0.884 5.884 20 Si 0.891 3.109 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.283 1.283 24 C -0.117 4.117 25 C -0.082 4.082 26 C -0.085 4.085 27 C -0.108 4.108 28 C -0.127 4.127 29 C -0.091 4.091 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.413 0.587 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.030 0.970 44 H 0.042 0.958 45 H -0.005 1.005 46 H 0.251 0.749 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 7.561 -3.941 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.020 3.980 3 C -0.233 4.233 4 O -0.262 6.262 5 C 0.060 3.940 6 H 0.102 0.898 7 C 0.301 3.699 8 O -0.418 6.418 9 N -0.347 5.347 10 C -0.017 4.017 11 C 0.050 3.950 12 H 0.085 0.915 13 C -0.217 4.217 14 N -0.315 5.315 15 C 0.022 3.978 16 C -0.394 4.394 17 H 0.083 0.917 18 C -0.188 4.188 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.118 4.118 25 C -0.100 4.100 26 C -0.103 4.103 27 C -0.126 4.126 28 C -0.145 4.145 29 C -0.110 4.110 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.014 0.986 46 H 0.061 0.939 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.131 0.869 50 H 0.132 0.868 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.132 7.688 -3.132 11.621 hybrid contribution 1.048 -0.783 -1.362 1.888 sum -7.084 6.906 -4.494 10.866 Atomic orbital electron populations 1.21820 0.93531 1.02777 1.02220 1.22160 0.95157 0.92238 0.88467 1.22321 1.01573 0.96942 1.02416 1.88065 1.34362 1.69075 1.34739 1.20655 0.86560 0.91169 0.95657 0.89752 1.20015 0.81999 0.78182 0.89665 1.90649 1.67636 1.47776 1.35786 1.45698 1.13634 1.62296 1.13119 1.21945 0.94910 0.99486 0.85317 1.20614 0.92012 0.88558 0.93792 0.91485 1.22171 1.01025 1.00233 0.98315 1.43922 1.63029 1.05253 1.19339 1.20732 0.96448 0.90760 0.89869 1.19137 1.13935 1.12194 0.94085 0.91668 1.24832 0.96172 1.00069 0.97681 1.70120 1.19266 1.23419 1.40015 0.86506 0.80009 0.78726 0.82597 1.21772 1.21899 1.20855 1.19847 0.97340 0.95175 0.99393 1.20778 0.97132 0.95819 0.96254 1.20846 0.96165 0.93777 0.99503 1.21037 0.95034 0.99078 0.97489 1.20978 0.99779 0.95171 0.98601 1.20793 0.97229 0.94031 0.98898 0.91793 0.91483 0.91877 0.92035 0.91658 0.92563 0.91808 0.74978 0.92956 0.92454 0.93634 0.92980 0.92453 0.95209 0.93936 0.98627 0.93884 0.86623 0.86644 0.86894 0.86835 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.56 37.16 0.36 -1.18 16 2 C 0.08 0.96 3.12 -26.73 -0.08 0.88 16 3 C -0.17 -1.91 9.52 37.16 0.35 -1.56 16 4 O -0.34 -5.60 8.32 -55.09 -0.46 -6.06 16 5 C 0.12 2.02 2.52 -29.04 -0.07 1.94 16 6 H 0.08 1.22 7.53 -51.93 -0.39 0.83 16 7 C 0.52 10.18 7.17 -10.98 -0.08 10.10 16 8 O -0.54 -12.29 16.51 -14.31 -0.24 -12.53 16 9 N -0.70 -13.42 5.34 -60.29 -0.32 -13.74 16 10 C 0.11 2.07 4.97 -4.04 -0.02 2.05 16 11 C 0.16 3.01 2.87 -67.93 -0.19 2.81 16 12 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 13 C -0.16 -2.61 9.18 37.15 0.34 -2.27 16 14 N -0.59 -13.28 2.29 -173.49 -0.40 -13.68 16 15 C 0.17 3.91 8.10 59.84 0.48 4.39 16 16 C -0.26 -6.41 9.37 -15.06 -0.14 -6.56 16 17 H 0.07 1.58 7.80 -52.49 -0.41 1.17 16 18 C 0.01 0.30 5.07 -17.43 -0.09 0.21 16 19 N -0.88 -22.41 10.58 55.49 0.59 -21.83 16 20 Si 0.89 20.03 29.58 -169.99 -5.03 15.00 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.12 -2.00 4.89 -104.62 -0.51 -2.51 16 25 C -0.08 -1.41 9.52 -39.58 -0.38 -1.79 16 26 C -0.08 -1.47 10.05 -39.58 -0.40 -1.87 16 27 C -0.11 -1.76 10.05 -39.58 -0.40 -2.16 16 28 C -0.13 -2.04 10.05 -39.58 -0.40 -2.43 16 29 C -0.09 -1.56 9.35 -39.58 -0.37 -1.93 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.73 7.79 -51.93 -0.40 0.32 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.63 7.96 -51.93 -0.41 0.22 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.41 8.22 7.73 -40.82 -0.32 7.91 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.18 7.84 -51.93 -0.41 0.78 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.77 7.43 -51.93 -0.39 0.39 16 44 H 0.04 1.08 7.12 -51.93 -0.37 0.71 16 45 H 0.00 -0.10 6.44 -51.93 -0.33 -0.44 16 46 H 0.25 6.36 8.31 -40.82 -0.34 6.02 16 47 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 48 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 49 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 50 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 51 H 0.12 2.05 7.63 -52.49 -0.40 1.65 16 LS Contribution 414.73 15.07 6.25 6.25 Total: -1.00 -28.32 414.73 -9.99 -38.32 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.79 Total: 10.14 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.60 Total: -1.87 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.13 Total: -49.25 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.69 Total: -18.59 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -28.32 -9.99 -38.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.431 kcal (2) G-P(sol) polarization free energy of solvation -28.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds