Wall clock time and date at job start Tue Mar 31 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47364 * 2 1 4 4 O 1.42900 * 109.47451 * 120.00477 * 2 1 3 5 5 C 1.42900 * 113.99894 * 149.99416 * 4 2 1 6 6 H 1.08998 * 109.47060 * 30.00462 * 5 4 2 7 7 C 1.50705 * 109.46716 * 150.00172 * 5 4 2 8 8 O 1.21282 * 119.99917 * 5.00521 * 7 5 4 9 9 N 1.34775 * 120.00048 * 184.99728 * 7 5 4 10 10 C 1.46498 * 120.00243 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47326 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46984 * 64.99727 * 11 10 9 13 13 C 1.52988 * 109.47188 * 185.00134 * 11 10 9 14 14 N 1.46507 * 109.46502 * 305.00193 * 11 10 9 15 15 C 1.46494 * 119.99793 * 299.99418 * 14 11 10 16 16 C 1.36933 * 119.99608 * 120.00358 * 14 11 10 17 17 H 1.07996 * 120.00464 * 19.01261 * 16 14 11 18 18 C 1.38816 * 119.99541 * 199.00613 * 16 14 11 19 19 N 1.31619 * 120.00294 * 14.85301 * 18 16 14 20 20 Si 1.86800 * 120.00036 * 194.84872 * 18 16 14 21 21 H 1.48492 * 109.47286 * 84.98992 * 20 18 16 22 22 H 1.48506 * 109.47182 * 204.99324 * 20 18 16 23 23 H 1.48505 * 109.47007 * 324.99033 * 20 18 16 24 24 C 1.50695 * 109.47214 * 269.99958 * 5 4 2 25 25 C 1.38239 * 119.99906 * 145.00517 * 24 5 4 26 26 C 1.38237 * 120.00155 * 180.02562 * 25 24 5 27 27 C 1.38231 * 119.99872 * 359.95265 * 26 25 24 28 28 C 1.38241 * 120.00222 * 0.02562 * 27 26 25 29 29 C 1.38236 * 119.99909 * 0.06838 * 28 27 26 30 30 H 1.09006 * 109.46878 * 299.99656 * 1 2 3 31 31 H 1.09000 * 109.47137 * 59.99290 * 1 2 3 32 32 H 1.08996 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46878 * 240.00344 * 2 1 3 34 34 H 1.09006 * 109.46842 * 60.00322 * 3 2 1 35 35 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47573 * 300.00443 * 3 2 1 37 37 H 0.97004 * 119.99525 * 0.02562 * 9 7 5 38 38 H 1.09004 * 109.47240 * 300.00410 * 10 9 7 39 39 H 1.09001 * 109.46827 * 60.00155 * 10 9 7 40 40 H 1.09000 * 109.47546 * 299.99679 * 13 11 10 41 41 H 1.09003 * 109.47490 * 59.99903 * 13 11 10 42 42 H 1.09005 * 109.47624 * 179.97438 * 13 11 10 43 43 H 1.09005 * 109.47011 * 95.16673 * 15 14 11 44 44 H 1.09007 * 109.47004 * 215.15888 * 15 14 11 45 45 H 1.08999 * 109.47629 * 335.16015 * 15 14 11 46 46 H 0.96990 * 120.00229 * 179.97438 * 19 18 16 47 47 H 1.07998 * 119.99835 * 359.97438 * 25 24 5 48 48 H 1.07992 * 120.00066 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00094 * 179.72324 * 27 26 25 50 50 H 1.07999 * 119.99864 * 179.97438 * 28 27 26 51 51 H 1.07992 * 120.00071 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9884 6 1 3.8530 -0.7831 0.2466 7 6 4.0098 -1.3469 2.2989 8 8 3.4748 -0.9364 3.3069 9 7 5.2695 -1.8233 2.3507 10 6 5.9928 -1.8444 3.6245 11 6 7.3905 -2.4279 3.4078 12 1 7.9648 -1.7645 2.7610 13 6 8.1002 -2.5659 4.7560 14 7 7.2771 -3.7459 2.7783 15 6 6.5462 -4.8202 3.4548 16 6 7.8546 -3.9736 1.5577 17 1 8.6336 -3.3178 1.1980 18 6 7.4387 -5.0476 0.7827 19 7 6.3132 -5.6678 1.0673 20 14 8.4764 -5.6126 -0.6641 21 1 9.5260 -6.5476 -0.1853 22 1 7.6114 -6.3041 -1.6536 23 1 9.1167 -4.4352 -1.3038 24 6 3.0389 -2.7373 0.5155 25 6 3.9228 -3.3189 -0.3741 26 6 3.7143 -4.6147 -0.8083 27 6 2.6224 -5.3291 -0.3521 28 6 1.7387 -4.7477 0.5380 29 6 1.9462 -3.4513 0.9706 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 5.6975 -2.1514 1.5444 38 1 6.0793 -0.8286 4.0102 39 1 5.4488 -2.4600 4.3410 40 1 8.1846 -1.5853 5.2244 41 1 7.5259 -3.2292 5.4028 42 1 9.0959 -2.9820 4.6017 43 1 5.5199 -4.8480 3.0885 44 1 7.0310 -5.7747 3.2497 45 1 6.5437 -4.6375 4.5293 46 1 6.0225 -6.4180 0.5256 47 1 4.7758 -2.7607 -0.7306 48 1 4.4046 -5.0689 -1.5036 49 1 2.4570 -6.3399 -0.6947 50 1 0.8854 -5.3059 0.8940 51 1 1.2556 -2.9970 1.6656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:50 Heat of formation + Delta-G solvation = -49.029743 kcal Electronic energy + Delta-G solvation = -31155.132528 eV Core-core repulsion = 27247.811711 eV Total energy + Delta-G solvation = -3907.320818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.35639 -39.74170 -38.90814 -38.19460 -35.33345 -34.28670 -33.63874 -32.17139 -31.64259 -30.98415 -28.61818 -28.01404 -27.90603 -26.32987 -24.76709 -23.49836 -22.90178 -22.00553 -21.25866 -20.84784 -18.74460 -18.30596 -18.19154 -17.79259 -17.00260 -16.81109 -16.46887 -16.00956 -15.69784 -15.51753 -15.36258 -15.21138 -14.78158 -14.56217 -14.34450 -14.20218 -13.90570 -13.71560 -13.57931 -13.48130 -13.39616 -13.12868 -13.08542 -12.96459 -12.80074 -12.56696 -12.54841 -12.44940 -12.22296 -12.05142 -12.01563 -11.91786 -11.63771 -11.60208 -11.44699 -11.06607 -10.57567 -10.47213 -9.93042 -9.66698 -9.55673 -8.67659 -7.61288 -5.06816 0.44515 0.64524 1.51674 1.58143 1.60389 1.61432 1.97892 2.60344 2.86293 3.12852 3.49880 3.65185 3.71964 3.85706 3.87044 4.05748 4.10950 4.11794 4.20061 4.26108 4.29392 4.33831 4.42037 4.64031 4.66704 4.71955 4.73717 4.77405 4.84433 4.87902 4.87963 4.89952 4.95251 5.11141 5.12315 5.22144 5.28076 5.29498 5.33772 5.37365 5.50318 5.63179 5.64048 5.64790 5.74143 5.79393 5.85249 6.17650 6.19603 6.45788 6.67731 7.27903 7.31103 8.01185 8.47789 9.38216 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010562 B = 0.005049 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.319977 B = 5543.921747 C = 6971.846831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 C -0.171 4.171 4 O -0.365 6.365 5 C 0.130 3.870 6 H 0.105 0.895 7 C 0.513 3.487 8 O -0.576 6.576 9 N -0.694 5.694 10 C 0.115 3.885 11 C 0.159 3.841 12 H 0.074 0.926 13 C -0.149 4.149 14 N -0.598 5.598 15 C 0.188 3.812 16 C -0.268 4.268 17 H 0.067 0.933 18 C -0.021 4.021 19 N -0.898 5.898 20 Si 0.940 3.060 21 H -0.303 1.303 22 H -0.297 1.297 23 H -0.275 1.275 24 C -0.120 4.120 25 C -0.091 4.091 26 C -0.097 4.097 27 C -0.113 4.113 28 C -0.128 4.128 29 C -0.104 4.104 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.411 0.589 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.054 0.946 43 H -0.001 1.001 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.244 0.756 47 H 0.120 0.880 48 H 0.113 0.887 49 H 0.133 0.867 50 H 0.137 0.863 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 8.533 -4.626 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 C -0.229 4.229 4 O -0.284 6.284 5 C 0.069 3.931 6 H 0.123 0.877 7 C 0.299 3.701 8 O -0.456 6.456 9 N -0.345 5.345 10 C -0.011 4.011 11 C 0.051 3.949 12 H 0.092 0.908 13 C -0.208 4.208 14 N -0.322 5.322 15 C 0.043 3.957 16 C -0.398 4.398 17 H 0.085 0.915 18 C -0.219 4.219 19 N -0.543 5.543 20 Si 0.771 3.229 21 H -0.231 1.231 22 H -0.224 1.224 23 H -0.201 1.201 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.131 4.131 28 C -0.145 4.145 29 C -0.122 4.122 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.248 0.752 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.017 0.983 44 H 0.035 0.965 45 H 0.032 0.968 46 H 0.054 0.946 47 H 0.138 0.862 48 H 0.131 0.869 49 H 0.151 0.849 50 H 0.155 0.845 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.982 8.687 -3.822 12.401 hybrid contribution 0.998 -1.061 -1.124 1.840 sum -6.985 7.625 -4.946 11.463 Atomic orbital electron populations 1.21831 0.92161 1.02677 1.03301 1.22472 0.96279 0.92755 0.87421 1.22301 1.01224 0.96046 1.03307 1.88050 1.34001 1.69440 1.36902 1.20515 0.87008 0.91429 0.94167 0.87735 1.20565 0.81897 0.77211 0.90417 1.90621 1.68307 1.49392 1.37281 1.45752 1.13750 1.61857 1.13093 1.21902 0.94382 0.99976 0.84883 1.20788 0.92220 0.86861 0.94994 0.90771 1.22061 1.00196 1.01873 0.96686 1.44000 1.62726 1.06392 1.19049 1.20349 0.94433 0.90144 0.90765 1.19318 1.13822 1.12096 0.94528 0.91472 1.25271 0.96849 1.00425 0.99374 1.70245 1.20092 1.23433 1.40530 0.85733 0.78436 0.78062 0.80664 1.23069 1.22351 1.20077 1.19897 0.97351 0.95424 0.99400 1.20866 0.97365 0.96035 0.96604 1.20971 0.96677 0.94043 0.99855 1.21301 0.94622 0.99939 0.97280 1.21258 1.00374 0.94864 0.98050 1.20908 0.97433 0.94721 0.99176 0.92323 0.88741 0.92582 0.91428 0.92526 0.93095 0.89127 0.75230 0.91294 0.94419 0.90640 0.93570 0.92702 0.98259 0.96497 0.96830 0.94604 0.86232 0.86870 0.84948 0.84468 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.56 71.98 0.69 -2.10 16 2 C 0.07 1.59 3.12 30.59 0.10 1.69 16 3 C -0.17 -3.46 9.52 71.98 0.69 -2.77 16 4 O -0.37 -11.76 8.32 -129.99 -1.08 -12.84 16 5 C 0.13 4.30 2.52 29.10 0.07 4.37 16 6 H 0.11 2.95 7.53 -2.39 -0.02 2.93 16 7 C 0.51 20.20 7.17 87.66 0.63 20.83 16 8 O -0.58 -26.37 16.51 15.96 0.26 -26.10 16 9 N -0.69 -26.55 5.34 -463.05 -2.47 -29.02 16 10 C 0.11 4.22 4.97 86.38 0.43 4.65 16 11 C 0.16 5.77 2.87 44.99 0.13 5.90 16 12 H 0.07 2.61 7.84 -2.39 -0.02 2.59 16 13 C -0.15 -4.60 9.18 71.98 0.66 -3.94 16 14 N -0.60 -26.47 2.29 -702.78 -1.61 -28.08 16 15 C 0.19 8.87 8.10 127.77 1.04 9.91 16 16 C -0.27 -12.80 9.37 84.04 0.79 -12.02 16 17 H 0.07 3.17 7.80 -2.91 -0.02 3.14 16 18 C -0.02 -1.03 5.07 84.86 0.43 -0.60 16 19 N -0.90 -45.78 10.58 21.65 0.23 -45.55 16 20 Si 0.94 40.91 29.58 68.60 2.03 42.94 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.30 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 24 C -0.12 -4.09 4.89 -19.87 -0.10 -4.19 16 25 C -0.09 -3.11 9.52 22.27 0.21 -2.90 16 26 C -0.10 -3.35 10.05 22.27 0.22 -3.12 16 27 C -0.11 -3.60 10.05 22.27 0.22 -3.38 16 28 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 29 C -0.10 -3.55 9.35 22.27 0.21 -3.35 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.50 7.79 -2.38 -0.02 1.48 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.05 1.07 7.96 -2.39 -0.02 1.05 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.41 16.21 7.73 -92.70 -0.72 15.50 16 38 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.04 1.54 7.84 -2.39 -0.02 1.52 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.47 6.66 -2.39 -0.02 1.46 16 42 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.00 -0.05 7.43 -2.38 -0.02 -0.06 16 44 H 0.02 0.85 7.12 -2.38 -0.02 0.83 16 45 H 0.01 0.57 6.44 -2.39 -0.02 0.56 16 46 H 0.24 12.47 8.31 -92.72 -0.77 11.70 16 47 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 48 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 49 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 50 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 51 H 0.11 3.97 7.63 -2.91 -0.02 3.95 16 Total: -1.00 -60.32 414.73 4.17 -56.15 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.18 Total: 37.27 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.64 Total: 5.24 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -3.85 Total: -102.65 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.82 Total: -38.95 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -60.32 4.17 -56.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.117 kcal (2) G-P(sol) polarization free energy of solvation -60.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds