Wall clock time and date at job start Tue Mar 31 2020 17:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47481 * 2 1 4 4 O 1.42897 * 109.47142 * 120.00328 * 2 1 3 5 5 C 1.42903 * 114.00273 * 89.99449 * 4 2 1 6 6 H 1.08997 * 109.46797 * 29.99935 * 5 4 2 7 7 C 1.50700 * 109.47356 * 270.00282 * 5 4 2 8 8 O 1.21282 * 119.99779 * 355.00118 * 7 5 4 9 9 N 1.34769 * 120.00058 * 174.99722 * 7 5 4 10 10 C 1.46505 * 120.00069 * 179.97438 * 9 7 5 11 11 C 1.52993 * 109.47263 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47486 * 295.00131 * 11 10 9 13 13 C 1.53001 * 109.47438 * 175.00468 * 11 10 9 14 14 N 1.46494 * 109.47334 * 54.99990 * 11 10 9 15 15 C 1.46502 * 120.00081 * 60.00316 * 14 11 10 16 16 C 1.36938 * 120.00187 * 239.99929 * 14 11 10 17 17 H 1.07998 * 119.99922 * 23.10301 * 16 14 11 18 18 C 1.38816 * 120.00275 * 203.09288 * 16 14 11 19 19 N 1.31623 * 119.99466 * 13.01074 * 18 16 14 20 20 Si 1.86797 * 120.00261 * 193.00180 * 18 16 14 21 21 H 1.48496 * 109.46947 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47187 * 120.00472 * 20 18 16 23 23 H 1.48498 * 109.47450 * 240.00629 * 20 18 16 24 24 C 1.50693 * 109.47065 * 150.00485 * 5 4 2 25 25 C 1.38231 * 120.00225 * 39.72498 * 24 5 4 26 26 C 1.38240 * 120.00297 * 179.81301 * 25 24 5 27 27 C 1.38236 * 119.99592 * 0.39662 * 26 25 24 28 28 C 1.38237 * 119.99991 * 359.85762 * 27 26 25 29 29 C 1.38227 * 120.00177 * 359.95722 * 28 27 26 30 30 H 1.09009 * 109.47178 * 59.99780 * 1 2 3 31 31 H 1.08994 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47305 * 300.00400 * 1 2 3 33 33 H 1.09007 * 109.46992 * 239.99925 * 2 1 3 34 34 H 1.08999 * 109.47534 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47362 * 300.00080 * 3 2 1 36 36 H 1.08996 * 109.47178 * 59.99522 * 3 2 1 37 37 H 0.96997 * 120.00702 * 0.02562 * 9 7 5 38 38 H 1.09005 * 109.47023 * 60.00367 * 10 9 7 39 39 H 1.09001 * 109.47137 * 300.00153 * 10 9 7 40 40 H 1.09004 * 109.46864 * 299.99854 * 13 11 10 41 41 H 1.08997 * 109.47568 * 59.99533 * 13 11 10 42 42 H 1.08998 * 109.47770 * 180.02562 * 13 11 10 43 43 H 1.08997 * 109.47712 * 95.12632 * 15 14 11 44 44 H 1.09006 * 109.47018 * 215.13196 * 15 14 11 45 45 H 1.09002 * 109.46919 * 335.12384 * 15 14 11 46 46 H 0.97005 * 119.99739 * 179.97438 * 19 18 16 47 47 H 1.07998 * 120.00387 * 0.02562 * 25 24 5 48 48 H 1.07993 * 120.00244 * 180.23293 * 26 25 24 49 49 H 1.08003 * 119.99996 * 179.83214 * 27 26 25 50 50 H 1.08000 * 119.99899 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00254 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9886 6 1 2.4626 -2.2800 -0.0499 7 6 0.9285 -2.8088 1.3361 8 8 -0.0178 -2.1984 1.7865 9 7 0.8430 -4.1403 1.1463 10 6 -0.3929 -4.8506 1.4847 11 6 -0.2261 -6.3398 1.1762 12 1 -0.0998 -6.4765 0.1022 13 6 -1.4687 -7.0999 1.6443 14 7 0.9535 -6.8543 1.8760 15 6 1.0263 -6.7854 3.3376 16 6 1.9883 -7.3998 1.1640 17 1 2.1297 -7.1334 0.1269 18 6 2.8556 -8.2949 1.7751 19 7 2.5469 -8.8168 2.9434 20 14 4.4605 -8.7590 0.9395 21 1 4.5705 -8.0398 -0.3550 22 1 5.6005 -8.3820 1.8132 23 1 4.4865 -10.2237 0.6962 24 6 3.3124 -2.5501 1.8889 25 6 3.4224 -2.0490 3.1725 26 6 4.4407 -2.4847 3.9998 27 6 5.3537 -3.4155 3.5406 28 6 5.2468 -3.9127 2.2552 29 6 4.2264 -3.4799 1.4293 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.5998 -4.6286 0.7864 38 1 -1.2167 -4.4472 0.8957 39 1 -0.6074 -4.7214 2.5456 40 1 -1.5951 -6.9633 2.7183 41 1 -2.3465 -6.7171 1.1236 42 1 -1.3497 -8.1609 1.4249 43 1 0.6864 -7.7295 3.7632 44 1 2.0564 -6.5996 3.6417 45 1 0.3902 -5.9757 3.6952 46 1 3.1527 -9.4426 3.3703 47 1 2.7109 -1.3196 3.5303 48 1 4.5244 -2.0960 5.0039 49 1 6.1509 -3.7540 4.1859 50 1 5.9604 -4.6396 1.8963 51 1 4.1431 -3.8680 0.4249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329628200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:58 Heat of formation + Delta-G solvation = -38.329515 kcal Electronic energy + Delta-G solvation = -30850.896765 eV Core-core repulsion = 26944.039944 eV Total energy + Delta-G solvation = -3906.856821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.20963 -38.53142 -37.79914 -36.53615 -33.79289 -33.33067 -32.01284 -31.07906 -30.63764 -29.34117 -27.42358 -27.02760 -26.01687 -25.01361 -23.03845 -22.51449 -21.65494 -21.25370 -19.95413 -19.31736 -17.28814 -17.09344 -16.88200 -16.55548 -15.67904 -15.31356 -15.14641 -14.54654 -14.50184 -14.28355 -14.14309 -13.80382 -13.66162 -13.17498 -12.95917 -12.81702 -12.73610 -12.61468 -12.42654 -12.29384 -12.21076 -12.02495 -11.73906 -11.51853 -11.43136 -11.08343 -10.95023 -10.85967 -10.80697 -10.74464 -10.71814 -10.41814 -10.28044 -10.24547 -9.90407 -9.78165 -9.23969 -8.67912 -8.60440 -8.52722 -8.42436 -6.79751 -5.75831 -3.23247 1.45854 1.64771 2.92718 3.31536 3.35727 3.37901 3.40892 3.76530 4.13980 4.43269 4.73519 4.83760 4.96416 5.06058 5.15188 5.16572 5.24220 5.27105 5.33976 5.36603 5.41712 5.52660 5.60122 5.66543 5.69911 5.76840 5.84118 5.88067 5.92746 6.09676 6.09918 6.11418 6.19135 6.25118 6.31995 6.40600 6.43583 6.64102 6.69125 6.73082 6.76511 6.85790 6.89102 7.03620 7.15900 7.19790 7.39710 7.70646 7.78238 8.04423 8.35209 8.65005 9.19190 9.82711 10.32857 11.28267 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004729 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.091610 B = 5919.339220 C = 7448.329979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 C -0.147 4.147 4 O -0.346 6.346 5 C 0.120 3.880 6 H 0.088 0.912 7 C 0.490 3.510 8 O -0.535 6.535 9 N -0.700 5.700 10 C 0.107 3.893 11 C 0.158 3.842 12 H 0.067 0.933 13 C -0.156 4.156 14 N -0.591 5.591 15 C 0.167 3.833 16 C -0.259 4.259 17 H 0.067 0.933 18 C 0.009 3.991 19 N -0.901 5.901 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.292 1.292 24 C -0.089 4.089 25 C -0.085 4.085 26 C -0.124 4.124 27 C -0.111 4.111 28 C -0.112 4.112 29 C -0.096 4.096 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.409 0.591 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.039 0.961 45 H -0.003 1.003 46 H 0.251 0.749 47 H 0.125 0.875 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 14.640 -4.748 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.022 3.978 3 C -0.204 4.204 4 O -0.263 6.263 5 C 0.059 3.941 6 H 0.105 0.895 7 C 0.274 3.726 8 O -0.413 6.413 9 N -0.353 5.353 10 C -0.018 4.018 11 C 0.049 3.951 12 H 0.085 0.915 13 C -0.216 4.216 14 N -0.314 5.314 15 C 0.023 3.977 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.190 4.190 19 N -0.545 5.545 20 Si 0.727 3.273 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.219 1.219 24 C -0.090 4.090 25 C -0.103 4.103 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.130 4.130 29 C -0.114 4.114 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.245 0.755 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.016 0.984 46 H 0.062 0.938 47 H 0.143 0.857 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.814 15.058 -4.141 15.638 hybrid contribution 1.126 -0.967 -0.620 1.608 sum 1.940 14.091 -4.761 15.000 Atomic orbital electron populations 1.22347 0.95244 1.03614 1.01633 1.22242 0.94472 0.93640 0.87428 1.21841 1.01569 0.94533 1.02469 1.88008 1.85624 1.16853 1.35845 1.20758 0.91494 0.82976 0.98887 0.89478 1.20963 0.89443 0.82974 0.79185 1.90654 1.38804 1.67191 1.44608 1.45879 1.17976 1.06935 1.64471 1.21942 0.85356 0.94209 1.00333 1.20611 0.88413 0.89336 0.96753 0.91477 1.22184 0.97169 1.01266 1.00942 1.43946 1.15232 1.69834 1.02429 1.20688 0.98331 0.95981 0.82719 1.19167 1.04081 1.19961 0.95585 0.91550 1.24983 0.99751 0.96947 0.97349 1.70081 1.35922 1.31583 1.16932 0.86308 0.84179 0.78039 0.78756 1.20312 1.21572 1.21857 1.19296 0.95721 0.98938 0.95004 1.20927 0.97694 0.98768 0.92911 1.21098 0.95445 0.98186 0.99524 1.21171 0.99027 0.96844 0.95893 1.21057 0.98421 0.99316 0.94176 1.20913 0.94071 0.96294 1.00146 0.92749 0.91345 0.91697 0.92483 0.92100 0.91353 0.91724 0.75520 0.92620 0.92177 0.93203 0.94054 0.92212 0.95322 0.94260 0.98437 0.93842 0.85745 0.86203 0.86240 0.85880 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 8.62 37.16 0.32 -1.83 16 2 C 0.08 0.95 3.34 -26.73 -0.09 0.86 16 3 C -0.15 -1.41 9.56 37.16 0.36 -1.06 16 4 O -0.35 -5.09 8.59 -55.09 -0.47 -5.56 16 5 C 0.12 1.77 2.72 -29.04 -0.08 1.70 16 6 H 0.09 1.09 7.23 -51.93 -0.38 0.71 16 7 C 0.49 8.46 6.51 -10.99 -0.07 8.38 16 8 O -0.53 -10.55 14.05 -14.30 -0.20 -10.75 16 9 N -0.70 -12.18 5.34 -60.29 -0.32 -12.51 16 10 C 0.11 1.92 4.94 -4.04 -0.02 1.90 16 11 C 0.16 3.01 2.87 -67.94 -0.19 2.81 16 12 H 0.07 1.26 7.87 -51.93 -0.41 0.85 16 13 C -0.16 -2.76 9.19 37.16 0.34 -2.42 16 14 N -0.59 -13.58 2.28 -173.49 -0.40 -13.97 16 15 C 0.17 4.03 8.00 59.85 0.48 4.50 16 16 C -0.26 -6.45 9.31 -15.06 -0.14 -6.59 16 17 H 0.07 1.60 7.82 -52.49 -0.41 1.19 16 18 C 0.01 0.23 5.10 -17.43 -0.09 0.14 16 19 N -0.90 -25.21 10.72 55.49 0.59 -24.62 16 20 Si 0.90 20.57 29.57 -169.99 -5.03 15.54 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 C -0.09 -1.36 4.92 -104.63 -0.51 -1.87 16 25 C -0.08 -1.31 9.35 -39.58 -0.37 -1.68 16 26 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 27 C -0.11 -1.56 10.05 -39.58 -0.40 -1.96 16 28 C -0.11 -1.64 10.05 -39.59 -0.40 -2.04 16 29 C -0.10 -1.42 9.67 -39.58 -0.38 -1.80 16 30 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.07 1.01 5.87 -51.93 -0.30 0.71 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.61 7.37 -51.92 -0.38 0.22 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.41 7.21 7.89 -40.82 -0.32 6.88 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.17 6.86 -51.93 -0.36 0.82 16 40 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.03 0.75 7.34 -51.93 -0.38 0.37 16 44 H 0.04 1.03 7.35 -51.93 -0.38 0.65 16 45 H 0.00 -0.06 6.53 -51.93 -0.34 -0.40 16 46 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.12 1.93 7.77 -52.49 -0.41 1.53 16 48 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 49 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 50 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 51 H 0.12 1.61 8.04 -52.49 -0.42 1.18 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -29.84 409.35 -9.98 -39.82 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.68 Total: 8.99 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.65 Total: -3.10 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.12 Total: -51.10 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.67 Total: -16.32 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.84 -9.98 -39.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.486 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds