Wall clock time and date at job start Tue Mar 31 2020 17:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47481 * 2 1 4 4 O 1.42897 * 109.47142 * 120.00328 * 2 1 3 5 5 C 1.42903 * 114.00273 * 89.99449 * 4 2 1 6 6 H 1.08997 * 109.46797 * 29.99935 * 5 4 2 7 7 C 1.50700 * 109.47356 * 270.00282 * 5 4 2 8 8 O 1.21282 * 119.99779 * 355.00118 * 7 5 4 9 9 N 1.34769 * 120.00058 * 174.99722 * 7 5 4 10 10 C 1.46505 * 120.00069 * 179.97438 * 9 7 5 11 11 C 1.52993 * 109.47263 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47486 * 295.00131 * 11 10 9 13 13 C 1.53001 * 109.47438 * 175.00468 * 11 10 9 14 14 N 1.46494 * 109.47334 * 54.99990 * 11 10 9 15 15 C 1.46502 * 120.00081 * 60.00316 * 14 11 10 16 16 C 1.36938 * 120.00187 * 239.99929 * 14 11 10 17 17 H 1.07998 * 119.99922 * 23.10301 * 16 14 11 18 18 C 1.38816 * 120.00275 * 203.09288 * 16 14 11 19 19 N 1.31623 * 119.99466 * 13.01074 * 18 16 14 20 20 Si 1.86797 * 120.00261 * 193.00180 * 18 16 14 21 21 H 1.48496 * 109.46947 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47187 * 120.00472 * 20 18 16 23 23 H 1.48498 * 109.47450 * 240.00629 * 20 18 16 24 24 C 1.50693 * 109.47065 * 150.00485 * 5 4 2 25 25 C 1.38231 * 120.00225 * 39.72498 * 24 5 4 26 26 C 1.38240 * 120.00297 * 179.81301 * 25 24 5 27 27 C 1.38236 * 119.99592 * 0.39662 * 26 25 24 28 28 C 1.38237 * 119.99991 * 359.85762 * 27 26 25 29 29 C 1.38227 * 120.00177 * 359.95722 * 28 27 26 30 30 H 1.09009 * 109.47178 * 59.99780 * 1 2 3 31 31 H 1.08994 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47305 * 300.00400 * 1 2 3 33 33 H 1.09007 * 109.46992 * 239.99925 * 2 1 3 34 34 H 1.08999 * 109.47534 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47362 * 300.00080 * 3 2 1 36 36 H 1.08996 * 109.47178 * 59.99522 * 3 2 1 37 37 H 0.96997 * 120.00702 * 0.02562 * 9 7 5 38 38 H 1.09005 * 109.47023 * 60.00367 * 10 9 7 39 39 H 1.09001 * 109.47137 * 300.00153 * 10 9 7 40 40 H 1.09004 * 109.46864 * 299.99854 * 13 11 10 41 41 H 1.08997 * 109.47568 * 59.99533 * 13 11 10 42 42 H 1.08998 * 109.47770 * 180.02562 * 13 11 10 43 43 H 1.08997 * 109.47712 * 95.12632 * 15 14 11 44 44 H 1.09006 * 109.47018 * 215.13196 * 15 14 11 45 45 H 1.09002 * 109.46919 * 335.12384 * 15 14 11 46 46 H 0.97005 * 119.99739 * 179.97438 * 19 18 16 47 47 H 1.07998 * 120.00387 * 0.02562 * 25 24 5 48 48 H 1.07993 * 120.00244 * 180.23293 * 26 25 24 49 49 H 1.08003 * 119.99996 * 179.83214 * 27 26 25 50 50 H 1.08000 * 119.99899 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00254 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9886 6 1 2.4626 -2.2800 -0.0499 7 6 0.9285 -2.8088 1.3361 8 8 -0.0178 -2.1984 1.7865 9 7 0.8430 -4.1403 1.1463 10 6 -0.3929 -4.8506 1.4847 11 6 -0.2261 -6.3398 1.1762 12 1 -0.0998 -6.4765 0.1022 13 6 -1.4687 -7.0999 1.6443 14 7 0.9535 -6.8543 1.8760 15 6 1.0263 -6.7854 3.3376 16 6 1.9883 -7.3998 1.1640 17 1 2.1297 -7.1334 0.1269 18 6 2.8556 -8.2949 1.7751 19 7 2.5469 -8.8168 2.9434 20 14 4.4605 -8.7590 0.9395 21 1 4.5705 -8.0398 -0.3550 22 1 5.6005 -8.3820 1.8132 23 1 4.4865 -10.2237 0.6962 24 6 3.3124 -2.5501 1.8889 25 6 3.4224 -2.0490 3.1725 26 6 4.4407 -2.4847 3.9998 27 6 5.3537 -3.4155 3.5406 28 6 5.2468 -3.9127 2.2552 29 6 4.2264 -3.4799 1.4293 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.5998 -4.6286 0.7864 38 1 -1.2167 -4.4472 0.8957 39 1 -0.6074 -4.7214 2.5456 40 1 -1.5951 -6.9633 2.7183 41 1 -2.3465 -6.7171 1.1236 42 1 -1.3497 -8.1609 1.4249 43 1 0.6864 -7.7295 3.7632 44 1 2.0564 -6.5996 3.6417 45 1 0.3902 -5.9757 3.6952 46 1 3.1527 -9.4426 3.3703 47 1 2.7109 -1.3196 3.5303 48 1 4.5244 -2.0960 5.0039 49 1 6.1509 -3.7540 4.1859 50 1 5.9604 -4.6396 1.8963 51 1 4.1431 -3.8680 0.4249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:57 Heat of formation + Delta-G solvation = -53.368713 kcal Electronic energy + Delta-G solvation = -30851.548914 eV Core-core repulsion = 26944.039944 eV Total energy + Delta-G solvation = -3907.508970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44394 -39.75590 -39.00005 -38.11836 -35.38351 -34.44886 -33.60900 -32.20983 -31.74637 -31.11552 -28.59412 -27.99440 -27.99038 -26.35892 -24.87291 -23.61823 -22.84392 -22.20206 -21.28939 -20.91060 -18.86874 -18.48030 -18.20002 -17.71536 -17.09257 -16.85537 -16.48578 -15.95999 -15.72213 -15.56814 -15.31893 -15.13618 -14.94088 -14.57939 -14.47269 -14.26616 -13.98125 -13.86370 -13.63865 -13.56159 -13.46952 -13.06477 -13.05587 -12.84079 -12.68953 -12.66359 -12.59812 -12.49218 -12.25726 -12.04625 -12.03208 -11.86889 -11.75444 -11.68302 -11.48955 -11.37472 -10.59256 -10.43958 -9.92408 -9.80910 -9.64057 -8.73571 -7.74162 -5.22633 0.33212 0.51271 1.50577 1.53211 1.60259 1.61653 2.14907 2.56066 2.63046 2.99417 3.41899 3.63654 3.66504 3.83474 3.86104 4.01559 4.06644 4.13169 4.16587 4.20199 4.28056 4.29782 4.37577 4.59492 4.60891 4.66399 4.72023 4.75916 4.76473 4.83929 4.93133 4.93227 4.97729 5.01767 5.03710 5.13858 5.23839 5.28985 5.35814 5.40468 5.43490 5.53637 5.56824 5.61387 5.61776 5.72163 5.75542 6.06877 6.14659 6.39018 6.66700 7.20908 7.28817 7.92493 8.39594 9.29630 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004729 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.091610 B = 5919.339220 C = 7448.329979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 C -0.142 4.142 4 O -0.362 6.362 5 C 0.127 3.873 6 H 0.113 0.887 7 C 0.490 3.510 8 O -0.563 6.563 9 N -0.700 5.700 10 C 0.118 3.882 11 C 0.157 3.843 12 H 0.077 0.923 13 C -0.148 4.148 14 N -0.599 5.599 15 C 0.191 3.809 16 C -0.251 4.251 17 H 0.081 0.919 18 C -0.046 4.046 19 N -0.938 5.938 20 Si 0.955 3.045 21 H -0.256 1.256 22 H -0.294 1.294 23 H -0.304 1.304 24 C -0.098 4.098 25 C -0.102 4.102 26 C -0.129 4.129 27 C -0.118 4.118 28 C -0.126 4.126 29 C -0.104 4.104 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.409 0.591 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.001 0.999 44 H 0.010 0.990 45 H 0.011 0.989 46 H 0.243 0.757 47 H 0.115 0.885 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.134 0.866 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 15.782 -6.822 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 C -0.199 4.199 4 O -0.280 6.280 5 C 0.066 3.934 6 H 0.131 0.869 7 C 0.276 3.724 8 O -0.442 6.442 9 N -0.352 5.352 10 C -0.008 4.008 11 C 0.050 3.950 12 H 0.095 0.905 13 C -0.208 4.208 14 N -0.322 5.322 15 C 0.046 3.954 16 C -0.381 4.381 17 H 0.098 0.902 18 C -0.241 4.241 19 N -0.585 5.585 20 Si 0.784 3.216 21 H -0.180 1.180 22 H -0.221 1.221 23 H -0.232 1.232 24 C -0.099 4.099 25 C -0.120 4.120 26 C -0.147 4.147 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.122 4.122 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.052 0.948 47 H 0.133 0.867 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.152 0.848 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.258 16.230 -6.254 17.439 hybrid contribution 0.902 -1.259 0.016 1.549 sum 2.159 14.971 -6.238 16.362 Atomic orbital electron populations 1.22287 0.95902 1.02069 1.02023 1.22528 0.94012 0.94924 0.87234 1.21833 1.01788 0.93019 1.03236 1.88011 1.85650 1.16731 1.37613 1.20720 0.89787 0.82899 1.00033 0.86950 1.21453 0.89995 0.82715 0.78280 1.90641 1.40094 1.67673 1.45812 1.45883 1.17749 1.07121 1.64453 1.21761 0.86287 0.93298 0.99446 1.20779 0.87488 0.89911 0.96843 0.90486 1.22072 0.97878 1.00069 1.00758 1.44070 1.16523 1.69690 1.01924 1.20276 0.96506 0.94887 0.83714 1.19551 1.04019 1.18523 0.95972 0.90176 1.25671 1.02746 0.97671 0.98036 1.70253 1.36799 1.32807 1.18680 0.85376 0.80586 0.76940 0.78662 1.17986 1.22115 1.23173 1.19410 0.96113 0.99287 0.95095 1.21023 0.98226 0.99226 0.93569 1.21364 0.94962 0.98032 1.00334 1.21482 0.99473 0.96533 0.96128 1.21348 0.98781 0.99665 0.94615 1.21142 0.93947 0.96113 1.01021 0.90160 0.93746 0.93468 0.90677 0.91712 0.88938 0.92607 0.75504 0.90832 0.94094 0.94105 0.90554 0.93904 0.98120 0.97133 0.97030 0.94764 0.86673 0.84241 0.84218 0.84840 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.62 71.98 0.62 -3.32 16 2 C 0.07 1.54 3.34 30.59 0.10 1.64 16 3 C -0.14 -2.42 9.56 71.98 0.69 -1.73 16 4 O -0.36 -10.32 8.59 -129.99 -1.12 -11.43 16 5 C 0.13 3.58 2.72 29.10 0.08 3.66 16 6 H 0.11 2.54 7.23 -2.39 -0.02 2.52 16 7 C 0.49 16.48 6.51 87.66 0.57 17.05 16 8 O -0.56 -22.08 14.05 15.95 0.22 -21.86 16 9 N -0.70 -23.46 5.34 -463.06 -2.47 -25.93 16 10 C 0.12 4.04 4.94 86.38 0.43 4.46 16 11 C 0.16 5.74 2.87 44.99 0.13 5.87 16 12 H 0.08 2.70 7.87 -2.38 -0.02 2.68 16 13 C -0.15 -5.03 9.19 71.98 0.66 -4.36 16 14 N -0.60 -27.16 2.28 -702.79 -1.61 -28.77 16 15 C 0.19 9.36 8.00 127.77 1.02 10.38 16 16 C -0.25 -12.25 9.31 84.03 0.78 -11.46 16 17 H 0.08 3.66 7.82 -2.91 -0.02 3.64 16 18 C -0.05 -2.40 5.10 84.86 0.43 -1.97 16 19 N -0.94 -53.53 10.72 21.65 0.23 -53.30 16 20 Si 0.96 41.87 29.57 68.60 2.03 43.90 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 24 C -0.10 -2.92 4.92 -19.87 -0.10 -3.02 16 25 C -0.10 -3.12 9.35 22.27 0.21 -2.91 16 26 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 27 C -0.12 -3.18 10.05 22.27 0.22 -2.96 16 28 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 29 C -0.10 -2.92 9.67 22.27 0.22 -2.71 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.04 1.27 5.87 -2.39 -0.01 1.26 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.38 7.37 -2.38 -0.02 1.36 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.41 13.73 7.89 -92.71 -0.73 13.00 16 38 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 39 H 0.04 1.57 6.86 -2.39 -0.02 1.55 16 40 H 0.04 1.44 7.67 -2.38 -0.02 1.42 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.00 0.03 7.34 -2.39 -0.02 0.01 16 44 H 0.01 0.54 7.35 -2.38 -0.02 0.52 16 45 H 0.01 0.51 6.53 -2.39 -0.02 0.50 16 46 H 0.24 13.70 8.31 -92.70 -0.77 12.93 16 47 H 0.12 3.65 7.77 -2.91 -0.02 3.63 16 48 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 49 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 50 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 51 H 0.14 3.32 8.04 -2.91 -0.02 3.30 16 Total: -1.00 -64.76 409.35 3.97 -60.79 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.17 Total: 34.61 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.51 Total: 2.00 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -3.85 Total: -108.00 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.89 Total: -33.29 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -64.76 3.97 -60.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.419 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds