Wall clock time and date at job start Tue Mar 31 2020 17:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 O 1.42896 * 109.47059 * 120.00385 * 2 1 3 5 5 C 1.42899 * 114.00221 * 90.00061 * 4 2 1 6 6 H 1.08995 * 109.47283 * 29.99736 * 5 4 2 7 7 C 1.50702 * 109.46705 * 269.99623 * 5 4 2 8 8 O 1.21278 * 120.00442 * 355.00052 * 7 5 4 9 9 N 1.34774 * 119.99866 * 175.00073 * 7 5 4 10 10 C 1.46498 * 120.00409 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.47281 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47074 * 64.99985 * 11 10 9 13 13 C 1.53000 * 109.47060 * 184.99802 * 11 10 9 14 14 N 1.46502 * 109.47269 * 304.99814 * 11 10 9 15 15 C 1.46494 * 120.00013 * 300.00017 * 14 11 10 16 16 C 1.36933 * 119.99934 * 120.00126 * 14 11 10 17 17 H 1.08000 * 120.00189 * 23.11764 * 16 14 11 18 18 C 1.38810 * 119.99943 * 203.11604 * 16 14 11 19 19 N 1.31618 * 119.99978 * 11.70324 * 18 16 14 20 20 Si 1.86802 * 119.99934 * 191.69779 * 18 16 14 21 21 H 1.48495 * 109.47342 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46892 * 120.00151 * 20 18 16 23 23 H 1.48503 * 109.47092 * 240.00231 * 20 18 16 24 24 C 1.50702 * 109.46916 * 149.99838 * 5 4 2 25 25 C 1.38227 * 120.00337 * 39.72708 * 24 5 4 26 26 C 1.38233 * 120.00112 * 179.80663 * 25 24 5 27 27 C 1.38234 * 119.99955 * 0.39815 * 26 25 24 28 28 C 1.38234 * 119.99855 * 359.85716 * 27 26 25 29 29 C 1.38232 * 120.00063 * 359.94897 * 28 27 26 30 30 H 1.09000 * 109.46718 * 299.99596 * 1 2 3 31 31 H 1.09001 * 109.47526 * 59.99548 * 1 2 3 32 32 H 1.08994 * 109.46940 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46718 * 240.00404 * 2 1 3 34 34 H 1.09000 * 109.47228 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46842 * 300.00372 * 3 2 1 36 36 H 1.08996 * 109.47038 * 60.00072 * 3 2 1 37 37 H 0.97002 * 119.99968 * 359.97438 * 9 7 5 38 38 H 1.09003 * 109.46754 * 59.99815 * 10 9 7 39 39 H 1.09006 * 109.46835 * 300.00128 * 10 9 7 40 40 H 1.09004 * 109.47504 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.47027 * 60.00154 * 13 11 10 42 42 H 1.08998 * 109.47348 * 299.99949 * 13 11 10 43 43 H 1.09008 * 109.47275 * 93.93087 * 15 14 11 44 44 H 1.08998 * 109.47705 * 213.92786 * 15 14 11 45 45 H 1.09006 * 109.47434 * 333.93390 * 15 14 11 46 46 H 0.96996 * 120.00031 * 179.97438 * 19 18 16 47 47 H 1.08004 * 119.99868 * 359.97438 * 25 24 5 48 48 H 1.08003 * 120.00132 * 180.22811 * 26 25 24 49 49 H 1.08001 * 120.00209 * 179.82685 * 27 26 25 50 50 H 1.08001 * 120.00018 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00104 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9885 6 1 2.4628 -2.2799 -0.0499 7 6 0.9287 -2.8087 1.3361 8 8 -0.0176 -2.1984 1.7865 9 7 0.8431 -4.1403 1.1464 10 6 -0.3930 -4.8505 1.4837 11 6 -0.2265 -6.3395 1.1743 12 1 0.5368 -6.7631 1.8271 13 6 -1.5553 -7.0608 1.4084 14 7 0.1796 -6.5054 -0.2235 15 6 -0.6839 -6.0147 -1.3003 16 6 1.3663 -7.1193 -0.5235 17 1 1.8186 -7.7963 0.1860 18 6 1.9881 -6.8713 -1.7396 19 7 1.5698 -5.8844 -2.5033 20 14 3.4185 -7.9382 -2.2919 21 1 3.6920 -8.9718 -1.2614 22 1 3.0755 -8.5994 -3.5767 23 1 4.6246 -7.0919 -2.4772 24 6 3.3128 -2.5500 1.8889 25 6 3.4228 -2.0490 3.1724 26 6 4.4410 -2.4847 3.9996 27 6 5.3541 -3.4154 3.5404 28 6 5.2472 -3.9126 2.2549 29 6 4.2266 -3.4798 1.4291 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.5999 -4.6284 0.7857 38 1 -1.2162 -4.4470 0.8940 39 1 -0.6084 -4.7212 2.5444 40 1 -1.4368 -8.1216 1.1875 41 1 -2.3185 -6.6372 0.7555 42 1 -1.8575 -6.9374 2.4483 43 1 -0.3746 -5.0087 -1.5843 44 1 -0.6019 -6.6767 -2.1623 45 1 -1.7179 -5.9931 -0.9558 46 1 2.0045 -5.7108 -3.3529 47 1 2.7115 -1.3190 3.5299 48 1 4.5247 -2.0960 5.0037 49 1 6.1512 -3.7538 4.1856 50 1 5.9608 -4.6394 1.8960 51 1 4.1428 -3.8685 0.4250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628202.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:00 Heat of formation + Delta-G solvation = -53.239255 kcal Electronic energy + Delta-G solvation = -30810.822743 eV Core-core repulsion = 26903.319387 eV Total energy + Delta-G solvation = -3907.503356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.45214 -39.76881 -39.01997 -38.13888 -35.35424 -34.48443 -33.67041 -32.22887 -31.76212 -31.08435 -28.60456 -28.04029 -27.99132 -26.37088 -24.86862 -23.61440 -22.83061 -22.25648 -21.27446 -20.92364 -18.84596 -18.53562 -18.21532 -17.71801 -17.11971 -16.76622 -16.54939 -16.01179 -15.69541 -15.58227 -15.33616 -15.18903 -14.95266 -14.57444 -14.41420 -14.26816 -14.02702 -13.83907 -13.67689 -13.62725 -13.49913 -13.21887 -13.09214 -12.83832 -12.72395 -12.63607 -12.59158 -12.47394 -12.27836 -12.05571 -12.04623 -11.87277 -11.75964 -11.71992 -11.48328 -11.42153 -10.60560 -10.46870 -9.90650 -9.83661 -9.65836 -8.75083 -7.75711 -5.24784 0.31428 0.48843 1.48077 1.53396 1.60317 1.61364 2.11389 2.53625 2.61776 2.98919 3.38157 3.62311 3.64456 3.82152 3.86276 3.97599 4.06382 4.11957 4.13874 4.19051 4.23412 4.30554 4.38808 4.60476 4.61128 4.63831 4.69915 4.71688 4.79653 4.83105 4.84148 4.86785 4.92263 5.00221 5.08111 5.14341 5.22928 5.26324 5.30548 5.33800 5.47708 5.54005 5.59194 5.60105 5.62678 5.71867 5.75571 6.05158 6.08522 6.37665 6.66746 7.20353 7.27699 7.90763 8.37207 9.25948 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.004761 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.841606 B = 5880.021364 C = 6741.178804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 C -0.137 4.137 4 O -0.357 6.357 5 C 0.125 3.875 6 H 0.087 0.913 7 C 0.492 3.508 8 O -0.565 6.565 9 N -0.697 5.697 10 C 0.115 3.885 11 C 0.158 3.842 12 H 0.071 0.929 13 C -0.148 4.148 14 N -0.601 5.601 15 C 0.184 3.816 16 C -0.256 4.256 17 H 0.071 0.929 18 C -0.039 4.039 19 N -0.928 5.928 20 Si 0.955 3.045 21 H -0.269 1.269 22 H -0.302 1.302 23 H -0.291 1.291 24 C -0.099 4.099 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.110 4.110 28 C -0.122 4.122 29 C -0.115 4.115 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.409 0.591 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.075 0.925 43 H -0.001 1.001 44 H 0.015 0.985 45 H 0.020 0.980 46 H 0.245 0.755 47 H 0.116 0.884 48 H 0.148 0.852 49 H 0.154 0.846 50 H 0.143 0.857 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 7.817 9.324 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 C -0.194 4.194 4 O -0.275 6.275 5 C 0.063 3.937 6 H 0.104 0.896 7 C 0.278 3.722 8 O -0.445 6.445 9 N -0.348 5.348 10 C -0.011 4.011 11 C 0.050 3.950 12 H 0.089 0.911 13 C -0.208 4.208 14 N -0.324 5.324 15 C 0.038 3.962 16 C -0.386 4.386 17 H 0.089 0.911 18 C -0.235 4.235 19 N -0.575 5.575 20 Si 0.784 3.216 21 H -0.193 1.193 22 H -0.229 1.229 23 H -0.218 1.218 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.141 4.141 27 C -0.127 4.127 28 C -0.140 4.140 29 C -0.133 4.133 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.245 0.755 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.018 0.982 44 H 0.034 0.966 45 H 0.039 0.961 46 H 0.055 0.945 47 H 0.134 0.866 48 H 0.166 0.834 49 H 0.172 0.828 50 H 0.161 0.839 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.273 8.382 9.661 13.485 hybrid contribution 0.572 -0.883 -1.440 1.783 sum 4.844 7.500 8.220 12.136 Atomic orbital electron populations 1.22252 0.95860 1.01686 1.02211 1.22494 0.94116 0.95208 0.86933 1.21808 1.01787 0.92349 1.03496 1.87948 1.85694 1.16646 1.37203 1.20675 0.90716 0.82994 0.99276 0.89583 1.21308 0.89928 0.82791 0.78203 1.90608 1.39932 1.67499 1.46481 1.45876 1.17801 1.07332 1.63764 1.21856 0.85947 0.94306 0.98959 1.20815 0.96893 0.91284 0.85983 0.91093 1.22056 0.96740 1.00329 1.01647 1.44059 1.19996 1.68331 1.00033 1.20398 0.89614 0.96479 0.89662 1.19491 0.98214 1.18757 1.02093 0.91114 1.25567 1.00388 0.98367 0.99139 1.70233 1.43815 1.30600 1.12841 0.85395 0.79820 0.78757 0.77596 1.19325 1.22916 1.21788 1.19371 0.95852 0.99474 0.95264 1.21037 0.98730 0.99095 0.93004 1.21440 0.94453 0.97763 1.00449 1.21554 0.99267 0.96172 0.95741 1.21385 0.97965 1.00156 0.94469 1.21133 0.94814 0.96786 1.00578 0.92533 0.90424 0.94604 0.92361 0.91625 0.89100 0.91794 0.75521 0.94042 0.91665 0.92620 0.93305 0.90633 0.98242 0.96598 0.96122 0.94547 0.86573 0.83416 0.82841 0.83926 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 8.62 71.98 0.62 -4.39 16 2 C 0.07 2.03 3.34 30.60 0.10 2.13 16 3 C -0.14 -2.98 9.56 71.98 0.69 -2.29 16 4 O -0.36 -12.02 8.59 -129.99 -1.12 -13.14 16 5 C 0.12 4.35 2.72 29.10 0.08 4.43 16 6 H 0.09 3.05 7.23 -2.39 -0.02 3.03 16 7 C 0.49 19.42 6.51 87.66 0.57 19.99 16 8 O -0.57 -24.70 14.05 15.97 0.22 -24.48 16 9 N -0.70 -27.48 5.34 -463.06 -2.47 -29.95 16 10 C 0.12 4.32 4.97 86.38 0.43 4.75 16 11 C 0.16 5.86 2.87 44.99 0.13 5.99 16 12 H 0.07 2.61 7.87 -2.39 -0.02 2.59 16 13 C -0.15 -4.61 9.18 71.98 0.66 -3.95 16 14 N -0.60 -27.20 2.29 -702.79 -1.61 -28.81 16 15 C 0.18 8.71 8.10 127.77 1.04 9.75 16 16 C -0.26 -12.58 9.32 84.03 0.78 -11.80 16 17 H 0.07 3.41 7.82 -2.91 -0.02 3.38 16 18 C -0.04 -1.97 5.12 84.86 0.43 -1.54 16 19 N -0.93 -50.48 10.65 21.65 0.23 -50.25 16 20 Si 0.95 41.92 29.57 68.60 2.03 43.95 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 C -0.10 -3.12 4.92 -19.87 -0.10 -3.22 16 25 C -0.10 -2.90 9.35 22.27 0.21 -2.69 16 26 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 27 C -0.11 -2.29 10.05 22.27 0.22 -2.07 16 28 C -0.12 -2.97 10.05 22.27 0.22 -2.74 16 29 C -0.11 -3.41 9.67 22.27 0.22 -3.19 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 1.34 5.87 -2.39 -0.01 1.32 16 33 H 0.06 1.70 7.37 -2.39 -0.02 1.68 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.41 17.03 7.89 -92.71 -0.73 16.30 16 38 H 0.04 1.68 7.84 -2.39 -0.02 1.66 16 39 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.05 1.54 6.66 -2.39 -0.02 1.53 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.00 -0.04 7.41 -2.38 -0.02 -0.06 16 44 H 0.02 0.80 7.23 -2.39 -0.02 0.79 16 45 H 0.02 0.86 6.43 -2.38 -0.02 0.85 16 46 H 0.25 13.19 8.31 -92.71 -0.77 12.41 16 47 H 0.12 3.52 7.77 -2.91 -0.02 3.49 16 48 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 49 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 50 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 51 H 0.12 3.69 8.04 -2.91 -0.02 3.67 16 Total: -1.00 -61.73 409.25 3.99 -57.75 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.17 Total: 38.35 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 6.53 Total: 6.58 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.85 Total: -109.00 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.89 Total: -37.62 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -61.73 3.99 -57.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628202.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.507 kcal (2) G-P(sol) polarization free energy of solvation -61.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds