Wall clock time and date at job start Tue Mar 31 2020 19:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.46937 * 2 1 4 4 C 1.35990 * 116.99945 * 179.97438 * 3 2 1 5 5 C 1.38717 * 119.99541 * 359.97438 * 4 3 2 6 6 C 1.38117 * 119.99794 * 179.97438 * 5 4 3 7 7 C 1.38723 * 119.99947 * 359.82747 * 6 5 4 8 8 O 1.35979 * 120.00189 * 180.23889 * 7 6 5 9 9 C 1.38674 * 119.99806 * 0.42057 * 7 6 5 10 10 C 1.50697 * 119.99949 * 179.81286 * 9 7 6 11 11 N 1.46902 * 109.47186 * 73.57079 * 10 9 7 12 12 C 1.47328 * 110.93200 * 70.89896 * 11 10 9 13 13 C 1.53246 * 109.10778 * 187.17416 * 12 11 10 14 14 H 1.08998 * 109.62513 * 186.44237 * 13 12 11 15 15 C 1.52995 * 109.62676 * 66.05578 * 13 12 11 16 16 N 1.47078 * 108.68487 * 306.24802 * 13 12 11 17 17 C 1.36936 * 120.88474 * 231.30686 * 16 13 12 18 18 H 1.07996 * 119.99687 * 50.62351 * 17 16 13 19 19 C 1.38808 * 120.00109 * 230.63386 * 17 16 13 20 20 N 1.31621 * 119.99796 * 205.95248 * 19 17 16 21 21 Si 1.86804 * 120.00137 * 25.94796 * 19 17 16 22 22 H 1.48495 * 109.46851 * 95.31315 * 21 19 17 23 23 H 1.48498 * 109.46811 * 215.31799 * 21 19 17 24 24 H 1.48499 * 109.46831 * 335.31489 * 21 19 17 25 25 C 1.47084 * 118.23650 * 51.27897 * 16 13 12 26 26 H 1.09007 * 109.62647 * 68.72086 * 25 16 13 27 27 C 1.52996 * 109.63093 * 189.10460 * 25 16 13 28 28 C 1.46897 * 110.99847 * 195.28013 * 11 10 9 29 29 C 1.38157 * 120.00207 * 359.53825 * 9 7 6 30 30 H 1.08992 * 109.47377 * 60.00035 * 1 2 3 31 31 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47208 * 300.00127 * 1 2 3 33 33 H 1.08998 * 109.46608 * 239.99955 * 2 1 3 34 34 H 1.08997 * 109.46781 * 120.00361 * 2 1 3 35 35 H 1.07997 * 120.00589 * 359.97438 * 5 4 3 36 36 H 1.07999 * 120.00265 * 180.02562 * 6 5 4 37 37 H 0.96703 * 113.99819 * 275.22041 * 8 7 6 38 38 H 1.08999 * 109.47338 * 313.56322 * 10 9 7 39 39 H 1.09008 * 109.47128 * 193.56947 * 10 9 7 40 40 H 1.08998 * 109.46233 * 67.37767 * 12 11 10 41 41 H 1.08999 * 109.75281 * 307.14892 * 12 11 10 42 42 H 1.08999 * 109.47271 * 300.38541 * 15 13 12 43 43 H 1.09000 * 109.46999 * 180.38071 * 15 13 12 44 44 H 1.09008 * 109.47230 * 60.38927 * 15 13 12 45 45 H 0.96998 * 119.99477 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46855 * 51.88294 * 27 25 16 47 47 H 1.08998 * 109.47585 * 171.88303 * 27 25 16 48 48 H 1.09000 * 109.47021 * 291.88528 * 27 25 16 49 49 H 1.09004 * 109.49859 * 52.77966 * 28 11 10 50 50 H 1.09004 * 109.51559 * 292.71639 * 28 11 10 51 51 H 1.07999 * 120.00373 * 180.22901 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1994 0.4253 0.0016 6 6 5.5686 0.6062 0.0016 7 6 6.0989 1.8881 -0.0030 8 8 7.4469 2.0663 -0.0079 9 6 5.2541 2.9878 0.0011 10 6 5.8301 4.3804 0.0003 11 7 6.3744 4.6844 -1.3299 12 6 5.2920 4.8620 -2.3134 13 6 5.9027 4.9979 -3.7124 14 1 5.1207 5.2434 -4.4309 15 6 6.5721 3.6812 -4.1110 16 7 6.9052 6.0738 -3.6864 17 6 6.8759 7.0843 -4.6101 18 1 5.9589 7.6259 -4.7890 19 6 8.0249 7.4123 -5.3165 20 7 8.1789 8.6292 -5.7938 21 14 9.3524 6.1268 -5.5897 22 1 9.1554 5.4858 -6.9146 23 1 10.6869 6.7768 -5.5477 24 1 9.2701 5.0961 -4.5239 25 6 7.9397 6.0359 -2.6415 26 1 8.6145 5.1996 -2.8245 27 6 8.7300 7.3459 -2.6529 28 6 7.2532 5.8606 -1.2828 29 6 3.8845 2.8069 0.0002 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.7866 -0.5727 0.0024 36 1 6.2266 -0.2503 0.0020 37 1 7.8503 2.0401 0.8706 38 1 6.6262 4.4448 0.7421 39 1 5.0467 5.0978 0.2450 40 1 4.7278 5.7633 -2.0738 41 1 4.6269 3.9988 -2.2892 42 1 7.3534 3.4382 -3.3909 43 1 7.0114 3.7828 -5.1034 44 1 5.8283 2.8844 -4.1229 45 1 8.9820 8.8585 -6.2872 46 1 8.0389 8.1875 -2.6074 47 1 9.3963 7.3758 -1.7908 48 1 9.3179 7.4076 -3.5688 49 1 8.0081 5.7200 -0.5092 50 1 6.6620 6.7481 -1.0569 51 1 3.2266 3.6633 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332021680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:42 Heat of formation + Delta-G solvation = -16.490847 kcal Electronic energy + Delta-G solvation = -30506.307973 eV Core-core repulsion = 26600.398148 eV Total energy + Delta-G solvation = -3905.909825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.49821 -38.97258 -38.21853 -36.00119 -34.91879 -32.64522 -32.07877 -31.94309 -30.96516 -28.82225 -28.09470 -26.33279 -25.98306 -24.29164 -23.46629 -22.64932 -21.94682 -21.23637 -20.46620 -18.41384 -18.19449 -17.93943 -16.65710 -16.38003 -16.34478 -15.44828 -15.34301 -14.75643 -14.63121 -14.54112 -14.10888 -13.96111 -13.72963 -13.48977 -13.17746 -13.13838 -13.02754 -12.60528 -12.49474 -12.18920 -12.12218 -11.96468 -11.91017 -11.59778 -11.43012 -11.38612 -11.13663 -10.95131 -10.78945 -10.56200 -10.51038 -10.39832 -10.26663 -9.84664 -9.76039 -9.65256 -9.30237 -8.96115 -8.25353 -8.05471 -7.75926 -6.39171 -5.98585 -3.46018 1.16605 1.27916 2.97754 3.44506 3.51121 3.55548 3.66241 4.28356 4.45799 4.58593 4.59234 4.61572 4.68305 4.81007 4.88988 5.01769 5.06603 5.13202 5.32906 5.36880 5.40936 5.44867 5.52964 5.66608 5.71764 5.81964 5.86942 5.88208 5.98888 6.09228 6.16128 6.18896 6.22440 6.26636 6.40615 6.44382 6.50708 6.57546 6.58195 6.61616 6.69169 6.84031 7.00554 7.14974 7.22858 7.27810 7.45794 7.59410 7.69508 7.80389 8.16939 8.58468 9.14370 9.78057 10.36872 11.15918 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.003160 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.980713 B = 8860.028210 C = 9284.075621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.118 3.882 5 C -0.197 4.197 6 C -0.114 4.114 7 C 0.097 3.903 8 O -0.477 6.477 9 C -0.054 4.054 10 C 0.099 3.901 11 N -0.516 5.516 12 C 0.050 3.950 13 C 0.168 3.832 14 H 0.068 0.932 15 C -0.151 4.151 16 N -0.594 5.594 17 C -0.276 4.276 18 H 0.067 0.933 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.855 3.145 22 H -0.295 1.295 23 H -0.298 1.298 24 H -0.249 1.249 25 C 0.170 3.830 26 H 0.041 0.959 27 C -0.135 4.135 28 C 0.052 3.948 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.377 0.623 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.262 0.738 46 H 0.069 0.931 47 H 0.033 0.967 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.030 0.970 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 -17.287 16.548 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.073 3.927 5 C -0.216 4.216 6 C -0.132 4.132 7 C 0.051 3.949 8 O -0.285 6.285 9 C -0.055 4.055 10 C -0.029 4.029 11 N -0.240 5.240 12 C -0.079 4.079 13 C 0.062 3.938 14 H 0.086 0.914 15 C -0.210 4.210 16 N -0.318 5.318 17 C -0.404 4.404 18 H 0.084 0.916 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.683 3.317 22 H -0.222 1.222 23 H -0.226 1.226 24 H -0.173 1.173 25 C 0.064 3.936 26 H 0.058 0.942 27 C -0.193 4.193 28 C -0.077 4.077 29 C -0.151 4.151 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.232 0.768 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.026 -17.317 15.673 25.040 hybrid contribution 0.506 -0.381 0.368 0.733 sum -8.520 -17.698 16.041 25.360 Atomic orbital electron populations 1.21776 0.92797 1.02764 1.03616 1.22752 0.95839 0.82169 1.01271 1.86088 1.19053 1.29048 1.88917 1.18868 0.82187 0.93927 0.97736 1.21028 0.93735 0.97936 1.08856 1.21228 0.94729 0.96977 1.00286 1.18093 0.83549 0.90917 1.02294 1.85040 1.16320 1.94663 1.32505 1.19961 0.91848 0.95839 0.97852 1.20865 0.98045 0.90978 0.92979 1.61969 1.19406 1.38383 1.04251 1.22682 0.92343 0.98678 0.94215 1.20724 0.92146 0.88493 0.92484 0.91431 1.22106 1.00700 0.97449 1.00743 1.44408 1.31643 1.24922 1.30838 1.18472 0.97932 1.08785 1.15215 0.91566 1.25797 0.97825 0.95468 0.95154 1.69957 1.27809 1.17536 1.37774 0.87323 0.80984 0.84389 0.78987 1.22222 1.22566 1.17326 1.20820 0.90458 0.96084 0.86235 0.94162 1.21878 0.99462 0.98367 0.99600 1.22668 0.95425 0.89981 0.99667 1.20229 0.94159 0.94954 1.05723 0.91396 0.90461 0.91559 0.92058 0.92218 0.85556 0.85431 0.76841 0.90282 0.94451 0.95344 0.91814 0.92176 0.93941 0.94725 0.92820 0.91238 0.94834 0.92231 0.92047 0.95142 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.32 -3.60 10.14 -19.71 -0.20 -3.80 16 4 C 0.12 1.42 6.69 -39.24 -0.26 1.15 16 5 C -0.20 -2.11 9.03 -39.45 -0.36 -2.46 16 6 C -0.11 -1.27 9.98 -39.45 -0.39 -1.67 16 7 C 0.10 1.24 6.68 -39.24 -0.26 0.97 16 8 O -0.48 -6.00 12.86 -19.68 -0.25 -6.25 16 9 C -0.05 -0.71 4.62 -104.49 -0.48 -1.20 16 10 C 0.10 1.38 4.70 -4.98 -0.02 1.36 16 11 N -0.52 -8.89 4.07 -235.39 -0.96 -9.85 16 12 C 0.05 0.91 4.88 -3.46 -0.02 0.90 16 13 C 0.17 3.58 3.31 -67.49 -0.22 3.35 16 14 H 0.07 1.47 7.95 -51.93 -0.41 1.06 16 15 C -0.15 -3.10 9.21 37.15 0.34 -2.76 16 16 N -0.59 -14.27 2.00 -157.01 -0.31 -14.59 16 17 C -0.28 -7.67 8.73 -15.06 -0.13 -7.80 16 18 H 0.07 2.02 8.06 -52.49 -0.42 1.60 16 19 C 0.06 1.71 3.76 -17.43 -0.07 1.64 16 20 N -0.89 -26.76 13.97 55.49 0.78 -25.98 16 21 Si 0.86 22.26 25.31 -169.99 -4.30 17.95 16 22 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.25 -6.31 5.14 56.52 0.29 -6.02 16 25 C 0.17 3.74 2.04 -67.49 -0.14 3.60 16 26 H 0.04 0.96 5.94 -51.93 -0.31 0.65 16 27 C -0.14 -3.02 7.80 37.16 0.29 -2.73 16 28 C 0.05 0.95 4.90 -3.70 -0.02 0.93 16 29 C -0.13 -1.68 8.98 -39.45 -0.35 -2.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 34 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 35 H 0.13 1.05 6.29 -52.49 -0.33 0.72 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.38 2.84 9.06 45.56 0.41 3.26 16 38 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 39 H 0.04 0.51 7.86 -51.92 -0.41 0.10 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.10 6.80 -51.93 -0.35 0.75 16 42 H 0.06 1.30 7.07 -51.93 -0.37 0.93 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 1.66 7.68 -51.93 -0.40 1.26 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.47 3.68 -51.93 -0.19 1.28 16 49 H 0.06 1.01 7.93 -51.93 -0.41 0.59 16 50 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.13 1.61 7.99 -52.49 -0.42 1.19 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -32.38 389.66 -8.75 -41.13 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.86 Total: 2.16 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.51 Total: -6.64 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.50 Total: -50.42 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.45 Total: -10.05 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.30 Total: 17.95 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.38 -8.75 -41.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332021680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.644 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds