Wall clock time and date at job start Tue Mar 31 2020 19:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.46937 * 2 1 4 4 C 1.35990 * 116.99945 * 179.97438 * 3 2 1 5 5 C 1.38717 * 119.99541 * 359.97438 * 4 3 2 6 6 C 1.38117 * 119.99794 * 179.97438 * 5 4 3 7 7 C 1.38723 * 119.99947 * 359.82747 * 6 5 4 8 8 O 1.35979 * 120.00189 * 180.23889 * 7 6 5 9 9 C 1.38674 * 119.99806 * 0.42057 * 7 6 5 10 10 C 1.50697 * 119.99949 * 179.81286 * 9 7 6 11 11 N 1.46902 * 109.47186 * 73.57079 * 10 9 7 12 12 C 1.47328 * 110.93200 * 70.89896 * 11 10 9 13 13 C 1.53246 * 109.10778 * 187.17416 * 12 11 10 14 14 H 1.08998 * 109.62513 * 186.44237 * 13 12 11 15 15 C 1.52995 * 109.62676 * 66.05578 * 13 12 11 16 16 N 1.47078 * 108.68487 * 306.24802 * 13 12 11 17 17 C 1.36936 * 120.88474 * 231.30686 * 16 13 12 18 18 H 1.07996 * 119.99687 * 50.62351 * 17 16 13 19 19 C 1.38808 * 120.00109 * 230.63386 * 17 16 13 20 20 N 1.31621 * 119.99796 * 205.95248 * 19 17 16 21 21 Si 1.86804 * 120.00137 * 25.94796 * 19 17 16 22 22 H 1.48495 * 109.46851 * 95.31315 * 21 19 17 23 23 H 1.48498 * 109.46811 * 215.31799 * 21 19 17 24 24 H 1.48499 * 109.46831 * 335.31489 * 21 19 17 25 25 C 1.47084 * 118.23650 * 51.27897 * 16 13 12 26 26 H 1.09007 * 109.62647 * 68.72086 * 25 16 13 27 27 C 1.52996 * 109.63093 * 189.10460 * 25 16 13 28 28 C 1.46897 * 110.99847 * 195.28013 * 11 10 9 29 29 C 1.38157 * 120.00207 * 359.53825 * 9 7 6 30 30 H 1.08992 * 109.47377 * 60.00035 * 1 2 3 31 31 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47208 * 300.00127 * 1 2 3 33 33 H 1.08998 * 109.46608 * 239.99955 * 2 1 3 34 34 H 1.08997 * 109.46781 * 120.00361 * 2 1 3 35 35 H 1.07997 * 120.00589 * 359.97438 * 5 4 3 36 36 H 1.07999 * 120.00265 * 180.02562 * 6 5 4 37 37 H 0.96703 * 113.99819 * 275.22041 * 8 7 6 38 38 H 1.08999 * 109.47338 * 313.56322 * 10 9 7 39 39 H 1.09008 * 109.47128 * 193.56947 * 10 9 7 40 40 H 1.08998 * 109.46233 * 67.37767 * 12 11 10 41 41 H 1.08999 * 109.75281 * 307.14892 * 12 11 10 42 42 H 1.08999 * 109.47271 * 300.38541 * 15 13 12 43 43 H 1.09000 * 109.46999 * 180.38071 * 15 13 12 44 44 H 1.09008 * 109.47230 * 60.38927 * 15 13 12 45 45 H 0.96998 * 119.99477 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46855 * 51.88294 * 27 25 16 47 47 H 1.08998 * 109.47585 * 171.88303 * 27 25 16 48 48 H 1.09000 * 109.47021 * 291.88528 * 27 25 16 49 49 H 1.09004 * 109.49859 * 52.77966 * 28 11 10 50 50 H 1.09004 * 109.51559 * 292.71639 * 28 11 10 51 51 H 1.07999 * 120.00373 * 180.22901 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1994 0.4253 0.0016 6 6 5.5686 0.6062 0.0016 7 6 6.0989 1.8881 -0.0030 8 8 7.4469 2.0663 -0.0079 9 6 5.2541 2.9878 0.0011 10 6 5.8301 4.3804 0.0003 11 7 6.3744 4.6844 -1.3299 12 6 5.2920 4.8620 -2.3134 13 6 5.9027 4.9979 -3.7124 14 1 5.1207 5.2434 -4.4309 15 6 6.5721 3.6812 -4.1110 16 7 6.9052 6.0738 -3.6864 17 6 6.8759 7.0843 -4.6101 18 1 5.9589 7.6259 -4.7890 19 6 8.0249 7.4123 -5.3165 20 7 8.1789 8.6292 -5.7938 21 14 9.3524 6.1268 -5.5897 22 1 9.1554 5.4858 -6.9146 23 1 10.6869 6.7768 -5.5477 24 1 9.2701 5.0961 -4.5239 25 6 7.9397 6.0359 -2.6415 26 1 8.6145 5.1996 -2.8245 27 6 8.7300 7.3459 -2.6529 28 6 7.2532 5.8606 -1.2828 29 6 3.8845 2.8069 0.0002 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.7866 -0.5727 0.0024 36 1 6.2266 -0.2503 0.0020 37 1 7.8503 2.0401 0.8706 38 1 6.6262 4.4448 0.7421 39 1 5.0467 5.0978 0.2450 40 1 4.7278 5.7633 -2.0738 41 1 4.6269 3.9988 -2.2892 42 1 7.3534 3.4382 -3.3909 43 1 7.0114 3.7828 -5.1034 44 1 5.8283 2.8844 -4.1229 45 1 8.9820 8.8585 -6.2872 46 1 8.0389 8.1875 -2.6074 47 1 9.3963 7.3758 -1.7908 48 1 9.3179 7.4076 -3.5688 49 1 8.0081 5.7200 -0.5092 50 1 6.6620 6.7481 -1.0569 51 1 3.2266 3.6633 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332021680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:41 Heat of formation + Delta-G solvation = -38.688605 kcal Electronic energy + Delta-G solvation = -30507.270540 eV Core-core repulsion = 26600.398148 eV Total energy + Delta-G solvation = -3906.872392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37450 -40.23815 -39.35256 -36.98667 -36.35954 -34.38911 -33.70511 -32.68382 -32.26776 -30.11501 -29.48087 -27.59096 -27.57878 -25.83078 -24.49205 -23.51752 -23.41264 -22.74006 -21.53697 -20.24739 -19.07727 -18.76487 -18.53784 -17.37113 -17.13784 -17.01349 -16.44591 -16.27417 -15.96783 -15.82739 -15.66602 -15.20414 -14.95391 -14.70671 -14.50661 -14.18947 -14.13512 -14.01969 -13.73573 -13.62270 -13.35280 -13.20867 -13.09793 -12.94078 -12.77916 -12.57604 -12.44430 -12.33685 -12.27004 -12.19148 -12.12833 -11.76961 -11.57797 -11.50987 -11.44728 -11.16334 -11.14401 -10.41100 -9.87838 -9.16748 -8.91023 -8.36601 -8.21207 -5.66026 0.28133 0.41666 1.34110 1.42029 1.55914 2.27121 2.44770 2.61194 3.03599 3.14630 3.42085 3.48696 3.78599 3.85100 4.08408 4.10785 4.16369 4.18597 4.25423 4.31722 4.35892 4.40397 4.50647 4.52546 4.58432 4.63372 4.70187 4.71855 4.81973 4.84877 4.88023 4.90113 4.91680 4.96048 5.01105 5.03531 5.16945 5.20415 5.23746 5.31286 5.36708 5.38112 5.54845 5.57035 5.65008 5.72363 5.99001 6.22018 6.26889 6.32694 6.47241 7.08717 7.13071 7.66768 8.26626 8.97395 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.003160 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.980713 B = 8860.028210 C = 9284.075621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.109 3.891 5 C -0.190 4.190 6 C -0.115 4.115 7 C 0.090 3.910 8 O -0.494 6.494 9 C -0.067 4.067 10 C 0.103 3.897 11 N -0.520 5.520 12 C 0.065 3.935 13 C 0.160 3.840 14 H 0.053 0.947 15 C -0.136 4.136 16 N -0.604 5.604 17 C -0.266 4.266 18 H 0.026 0.974 19 C 0.024 3.976 20 N -0.933 5.933 21 Si 0.911 3.089 22 H -0.304 1.304 23 H -0.297 1.297 24 H -0.237 1.237 25 C 0.167 3.833 26 H 0.033 0.967 27 C -0.130 4.130 28 C 0.062 3.938 29 C -0.144 4.144 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.398 0.602 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.017 0.983 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.024 0.976 44 H 0.058 0.942 45 H 0.263 0.737 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.034 0.966 49 H 0.091 0.909 50 H 0.021 0.979 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 -20.397 18.679 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.063 3.937 5 C -0.209 4.209 6 C -0.133 4.133 7 C 0.045 3.955 8 O -0.305 6.305 9 C -0.069 4.069 10 C -0.024 4.024 11 N -0.243 5.243 12 C -0.064 4.064 13 C 0.054 3.946 14 H 0.072 0.928 15 C -0.195 4.195 16 N -0.329 5.329 17 C -0.395 4.395 18 H 0.043 0.957 19 C -0.175 4.175 20 N -0.575 5.575 21 Si 0.738 3.262 22 H -0.232 1.232 23 H -0.225 1.225 24 H -0.160 1.160 25 C 0.062 3.938 26 H 0.050 0.950 27 C -0.188 4.188 28 C -0.067 4.067 29 C -0.163 4.163 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.255 0.745 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.035 0.965 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.109 0.891 50 H 0.039 0.961 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.848 -20.462 17.849 28.558 hybrid contribution 0.337 0.543 -0.228 0.678 sum -8.511 -19.919 17.621 27.923 Atomic orbital electron populations 1.21812 0.91790 1.04124 1.03038 1.23050 0.96722 0.80812 1.02324 1.86078 1.18761 1.31302 1.88858 1.18990 0.82794 0.94060 0.97807 1.21312 0.93492 0.98744 1.07353 1.21463 0.95210 0.97082 0.99589 1.18222 0.83631 0.91329 1.02353 1.84973 1.16272 1.94718 1.34555 1.19873 0.92068 0.95492 0.99428 1.20882 0.98665 0.91667 0.91200 1.61927 1.19084 1.37371 1.05951 1.22423 0.92476 0.98749 0.92784 1.20851 0.91343 0.88104 0.94334 0.92828 1.21931 1.00835 0.97451 0.99279 1.44508 1.32626 1.24918 1.30865 1.18244 0.96426 1.09084 1.15774 0.95654 1.26182 0.99663 0.96473 0.95223 1.70043 1.28773 1.19134 1.39506 0.86443 0.78827 0.82400 0.78484 1.23200 1.22452 1.16042 1.20870 0.90025 0.95359 0.87562 0.94983 1.21799 0.99297 0.97619 1.00065 1.22474 0.96045 0.90297 0.97920 1.20284 0.94174 0.95490 1.06376 0.92285 0.88118 0.91832 0.91348 0.90674 0.83073 0.83474 0.74484 0.88517 0.94252 0.96480 0.90423 0.92827 0.95720 0.92323 0.92815 0.93781 0.90917 0.94723 0.89065 0.96096 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.59 5.46 71.98 0.39 0.99 16 3 O -0.34 -7.07 10.14 -93.44 -0.95 -8.02 16 4 C 0.11 2.39 6.69 22.49 0.15 2.54 16 5 C -0.19 -3.49 9.03 22.36 0.20 -3.29 16 6 C -0.12 -2.20 9.98 22.36 0.22 -1.98 16 7 C 0.09 2.04 6.68 22.49 0.15 2.19 16 8 O -0.49 -10.86 12.86 -93.32 -1.20 -12.06 16 9 C -0.07 -1.64 4.62 -19.78 -0.09 -1.73 16 10 C 0.10 2.62 4.70 85.56 0.40 3.03 16 11 N -0.52 -16.82 4.07 -898.64 -3.66 -20.48 16 12 C 0.06 2.31 4.88 86.30 0.42 2.73 16 13 C 0.16 6.75 3.31 44.96 0.15 6.90 16 14 H 0.05 2.38 7.95 -2.39 -0.02 2.36 16 15 C -0.14 -5.39 9.21 71.98 0.66 -4.73 16 16 N -0.60 -29.21 2.00 -650.65 -1.30 -30.51 16 17 C -0.27 -15.26 8.73 84.03 0.73 -14.53 16 18 H 0.03 1.66 8.06 -2.91 -0.02 1.63 16 19 C 0.02 1.39 3.76 84.86 0.32 1.70 16 20 N -0.93 -57.73 13.97 21.65 0.30 -57.43 16 21 Si 0.91 46.71 25.31 68.60 1.74 48.45 16 22 H -0.30 -15.91 7.11 99.48 0.71 -15.21 16 23 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 24 H -0.24 -11.56 5.14 99.48 0.51 -11.05 16 25 C 0.17 7.16 2.04 44.96 0.09 7.25 16 26 H 0.03 1.46 5.94 -2.38 -0.01 1.45 16 27 C -0.13 -5.71 7.80 71.98 0.56 -5.15 16 28 C 0.06 2.15 4.90 86.38 0.42 2.57 16 29 C -0.14 -3.46 8.98 22.36 0.20 -3.26 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 34 H 0.08 0.74 7.66 -2.39 -0.02 0.73 16 35 H 0.15 1.93 6.29 -2.91 -0.02 1.91 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.40 4.71 9.06 -74.05 -0.67 4.04 16 38 H 0.10 2.11 7.76 -2.39 -0.02 2.10 16 39 H 0.04 1.00 7.86 -2.38 -0.02 0.98 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 2.56 6.80 -2.39 -0.02 2.55 16 42 H 0.05 2.20 7.07 -2.39 -0.02 2.18 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.04 2.12 7.68 -2.39 -0.02 2.10 16 47 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.03 1.68 3.68 -2.39 -0.01 1.67 16 49 H 0.09 2.65 7.93 -2.38 -0.02 2.63 16 50 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.13 3.03 7.99 -2.91 -0.02 3.00 16 Total: -1.00 -71.18 389.66 0.72 -70.46 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.05 Total: 15.12 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.73 Total: -5.54 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -4.66 Total: -108.41 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -2.15 Total: -20.07 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.74 Total: 48.45 kcal Total: -71.18 0.72 -70.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332021680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.775 kcal (2) G-P(sol) polarization free energy of solvation -71.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds