Wall clock time and date at job start Tue Mar 31 2020 19:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47226 * 2 1 4 4 C 1.35975 * 117.00050 * 180.02562 * 3 2 1 5 5 C 1.38719 * 120.00214 * 0.02562 * 4 3 2 6 6 C 1.38106 * 120.00298 * 180.02562 * 5 4 3 7 7 C 1.38722 * 119.99819 * 359.69766 * 6 5 4 8 8 O 1.35993 * 119.99755 * 180.29814 * 7 6 5 9 9 C 1.38671 * 120.00135 * 0.55016 * 7 6 5 10 10 C 1.50694 * 120.00101 * 179.74471 * 9 7 6 11 11 N 1.46896 * 109.47619 * 284.72890 * 10 9 7 12 12 C 1.46900 * 111.00238 * 170.00324 * 11 10 9 13 13 C 1.53236 * 109.33980 * 187.25404 * 12 11 10 14 14 H 1.09002 * 109.79269 * 65.96592 * 13 12 11 15 15 C 1.53001 * 109.63127 * 186.45589 * 13 12 11 16 16 N 1.47080 * 108.52196 * 306.16780 * 13 12 11 17 17 C 1.36939 * 120.88007 * 231.19193 * 16 13 12 18 18 H 1.07998 * 120.00006 * 126.15248 * 17 16 13 19 19 C 1.38813 * 119.99748 * 306.14778 * 17 16 13 20 20 N 1.31619 * 120.00092 * 343.45086 * 19 17 16 21 21 Si 1.86802 * 119.99814 * 163.45197 * 19 17 16 22 22 H 1.48496 * 109.46983 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47031 * 300.00101 * 21 19 17 24 24 H 1.48496 * 109.47186 * 60.00074 * 21 19 17 25 25 C 1.47078 * 118.23790 * 51.45631 * 16 13 12 26 26 H 1.08998 * 109.62970 * 68.25266 * 25 16 13 27 27 C 1.53007 * 109.62962 * 188.83821 * 25 16 13 28 28 C 1.46906 * 110.99885 * 294.30170 * 11 10 9 29 29 C 1.38157 * 119.99746 * 359.47453 * 9 7 6 30 30 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47142 * 300.00146 * 1 2 3 32 32 H 1.09004 * 109.47449 * 59.99850 * 1 2 3 33 33 H 1.08997 * 109.47109 * 239.99799 * 2 1 3 34 34 H 1.08999 * 109.46881 * 119.99713 * 2 1 3 35 35 H 1.08009 * 120.00078 * 359.97180 * 5 4 3 36 36 H 1.08009 * 120.00025 * 179.97438 * 6 5 4 37 37 H 0.96698 * 113.99655 * 270.25533 * 8 7 6 38 38 H 1.09003 * 109.47237 * 164.72270 * 10 9 7 39 39 H 1.09005 * 109.46833 * 44.73133 * 10 9 7 40 40 H 1.09000 * 109.49700 * 67.28883 * 12 11 10 41 41 H 1.09002 * 109.51310 * 307.22376 * 12 11 10 42 42 H 1.08992 * 109.47383 * 179.02754 * 15 13 12 43 43 H 1.08998 * 109.47157 * 299.02897 * 15 13 12 44 44 H 1.09007 * 109.46821 * 59.02710 * 15 13 12 45 45 H 0.96997 * 119.99839 * 175.41010 * 20 19 17 46 46 H 1.08994 * 109.46971 * 59.27314 * 27 25 16 47 47 H 1.09000 * 109.47020 * 179.28194 * 27 25 16 48 48 H 1.09002 * 109.46676 * 299.27305 * 27 25 16 49 49 H 1.09000 * 109.49056 * 292.70649 * 28 11 10 50 50 H 1.08999 * 109.49169 * 52.75880 * 28 11 10 51 51 H 1.07996 * 120.00088 * 180.22551 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1994 0.4254 -0.0016 6 6 5.5686 0.6063 -0.0016 7 6 6.0988 1.8882 -0.0069 8 8 7.4470 2.0663 -0.0131 9 6 5.2541 2.9879 -0.0007 10 6 5.8302 4.3804 -0.0006 11 7 6.3491 4.6957 1.3370 12 6 7.1264 5.9421 1.3198 13 6 7.7980 6.1402 2.6829 14 1 8.5404 5.3589 2.8456 15 6 8.4761 7.5110 2.7274 16 7 6.7654 6.0656 3.7277 17 6 6.6534 7.0467 4.6764 18 1 5.7062 7.5414 4.8324 19 6 7.7574 7.4052 5.4377 20 7 8.8054 6.6109 5.4920 21 14 7.7555 9.0152 6.3851 22 1 9.0418 9.1630 7.1124 23 1 7.5901 10.1468 5.4379 24 1 6.6335 9.0158 7.3578 25 6 5.8602 4.9064 3.7299 26 1 6.4182 4.0066 3.9892 27 6 4.7391 5.1317 4.7465 28 6 5.2612 4.7598 2.3221 29 6 3.8845 2.8069 -0.0001 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7866 -0.5727 -0.0015 36 1 6.2265 -0.2503 -0.0020 37 1 7.8411 2.1160 0.8686 38 1 5.0517 5.0957 -0.2662 39 1 6.6402 4.4385 -0.7277 40 1 6.4625 6.7821 1.1159 41 1 7.8894 5.8847 0.5434 42 1 8.9381 7.6562 3.7039 43 1 9.2407 7.5634 1.9524 44 1 7.7326 8.2898 2.5577 45 1 9.6021 6.8910 5.9691 46 1 4.1875 6.0345 4.4849 47 1 4.0628 4.2769 4.7370 48 1 5.1686 5.2439 5.7420 49 1 4.6232 5.6163 2.1042 50 1 4.6711 3.8447 2.2723 51 1 3.2266 3.6634 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332021681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:44 Heat of formation + Delta-G solvation = -42.873516 kcal Electronic energy + Delta-G solvation = -30267.454944 eV Core-core repulsion = 26360.401080 eV Total energy + Delta-G solvation = -3907.053864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.40211 -40.10870 -39.28704 -36.97089 -36.38494 -34.44490 -33.56588 -32.67867 -32.06486 -29.78414 -29.27905 -27.79863 -27.28579 -26.17528 -24.55063 -23.52221 -23.14306 -22.01142 -21.55735 -20.84773 -19.03725 -18.78620 -18.09061 -17.35360 -17.07760 -16.95108 -16.45943 -16.14186 -16.08781 -15.91871 -15.63818 -15.04329 -14.85117 -14.76196 -14.66289 -14.20323 -14.04123 -13.69065 -13.55080 -13.36925 -13.31541 -13.18688 -12.96339 -12.88369 -12.70156 -12.55412 -12.48762 -12.35323 -12.31490 -12.14393 -12.03023 -11.96650 -11.53400 -11.51696 -11.48367 -11.22046 -11.13335 -10.06160 -9.91024 -9.23736 -8.94364 -8.32057 -7.64071 -5.58333 0.24984 0.37323 1.45683 1.48198 1.53590 2.25023 2.50337 2.57380 3.14140 3.28247 3.52087 3.61202 3.73649 3.82145 4.08653 4.09327 4.16254 4.24223 4.30691 4.35211 4.38675 4.42779 4.51601 4.59585 4.65204 4.67547 4.72741 4.79190 4.84977 4.88520 4.90683 4.96870 4.97812 4.99827 5.01669 5.05558 5.16453 5.22511 5.27224 5.34343 5.46849 5.52472 5.55895 5.66471 5.71277 5.78664 5.90337 6.23224 6.25896 6.44928 6.60898 6.93445 7.29125 7.85128 8.59745 9.17679 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.003034 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.160079 B = 9225.288611 C =10117.099694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.112 3.888 5 C -0.189 4.189 6 C -0.110 4.110 7 C 0.080 3.920 8 O -0.502 6.502 9 C -0.069 4.069 10 C 0.102 3.898 11 N -0.529 5.529 12 C 0.058 3.942 13 C 0.201 3.799 14 H 0.005 0.995 15 C -0.140 4.140 16 N -0.594 5.594 17 C -0.261 4.261 18 H 0.042 0.958 19 C -0.003 4.003 20 N -0.906 5.906 21 Si 0.936 3.064 22 H -0.292 1.292 23 H -0.275 1.275 24 H -0.276 1.276 25 C 0.167 3.833 26 H 0.007 0.993 27 C -0.119 4.119 28 C 0.066 3.934 29 C -0.143 4.143 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.400 0.600 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.021 0.979 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.251 0.749 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.039 0.961 49 H 0.019 0.981 50 H 0.074 0.926 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.652 -13.794 -12.875 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.067 3.933 5 C -0.208 4.208 6 C -0.129 4.129 7 C 0.035 3.965 8 O -0.313 6.313 9 C -0.070 4.070 10 C -0.025 4.025 11 N -0.253 5.253 12 C -0.071 4.071 13 C 0.095 3.905 14 H 0.023 0.977 15 C -0.198 4.198 16 N -0.319 5.319 17 C -0.392 4.392 18 H 0.060 0.940 19 C -0.201 4.201 20 N -0.548 5.548 21 Si 0.764 3.236 22 H -0.218 1.218 23 H -0.201 1.201 24 H -0.202 1.202 25 C 0.061 3.939 26 H 0.025 0.975 27 C -0.177 4.177 28 C -0.064 4.064 29 C -0.163 4.163 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.058 0.942 49 H 0.037 0.963 50 H 0.092 0.908 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.427 -14.048 -13.194 22.406 hybrid contribution 0.088 1.478 1.058 1.819 sum -11.339 -12.571 -12.136 20.830 Atomic orbital electron populations 1.21811 0.91686 1.04157 1.03063 1.23078 0.96794 0.80745 1.02404 1.86079 1.18536 1.31405 1.88771 1.18963 0.82896 0.93939 0.97490 1.21329 0.93263 0.98917 1.07288 1.21432 0.95345 0.96850 0.99227 1.18310 0.83614 0.91669 1.02930 1.84701 1.16809 1.95053 1.34777 1.19882 0.92337 0.95402 0.99400 1.20894 0.98682 0.91725 0.91180 1.61838 1.23879 1.34332 1.05230 1.22592 0.96577 0.89110 0.98836 1.20194 0.89387 0.94928 0.86021 0.97686 1.21932 0.98919 0.96416 1.02541 1.44291 1.36413 1.21259 1.29964 1.18739 0.96148 1.12452 1.11853 0.94037 1.26055 0.98102 0.99821 0.96169 1.70232 1.05148 1.35198 1.44198 0.85879 0.76792 0.81888 0.79087 1.21808 1.20108 1.20159 1.20738 0.90927 0.89634 0.92578 0.97487 1.21565 0.97094 1.00434 0.98576 1.22522 0.91932 0.99168 0.92755 1.20269 0.93930 0.95671 1.06404 0.88073 0.92164 0.91891 0.90774 0.91114 0.82686 0.83371 0.74290 0.94207 0.89363 0.96111 0.90243 0.91245 0.93432 0.94598 0.93984 0.93573 0.91602 0.94167 0.96258 0.90753 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.04 0.61 5.46 71.98 0.39 1.00 16 3 O -0.33 -7.33 10.14 -93.27 -0.95 -8.27 16 4 C 0.11 2.65 6.69 22.49 0.15 2.81 16 5 C -0.19 -3.81 9.03 22.35 0.20 -3.60 16 6 C -0.11 -2.42 9.98 22.35 0.22 -2.19 16 7 C 0.08 2.12 6.68 22.49 0.15 2.27 16 8 O -0.50 -13.50 12.83 -93.47 -1.20 -14.70 16 9 C -0.07 -1.90 4.43 -19.78 -0.09 -1.99 16 10 C 0.10 2.99 4.71 85.56 0.40 3.39 16 11 N -0.53 -18.27 4.62 -898.88 -4.15 -22.43 16 12 C 0.06 2.18 4.91 86.38 0.42 2.61 16 13 C 0.20 9.23 3.12 44.96 0.14 9.37 16 14 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 15 C -0.14 -6.37 8.11 71.98 0.58 -5.79 16 16 N -0.59 -29.37 2.80 -649.79 -1.82 -31.19 16 17 C -0.26 -13.93 6.91 84.03 0.58 -13.35 16 18 H 0.04 2.27 7.18 -2.91 -0.02 2.24 16 19 C 0.00 -0.14 3.34 84.86 0.28 0.15 16 20 N -0.91 -51.80 11.74 21.65 0.25 -51.54 16 21 Si 0.94 43.32 29.59 68.60 2.03 45.35 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 C 0.17 7.28 3.68 45.12 0.17 7.45 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 C -0.12 -4.74 8.20 71.98 0.59 -4.15 16 28 C 0.07 2.39 4.78 86.54 0.41 2.81 16 29 C -0.14 -3.76 8.84 22.36 0.20 -3.56 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 34 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 35 H 0.16 2.16 6.29 -2.91 -0.02 2.14 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.40 9.54 9.06 -74.06 -0.67 8.87 16 38 H 0.04 1.13 7.93 -2.39 -0.02 1.11 16 39 H 0.09 2.53 7.82 -2.38 -0.02 2.51 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 2.67 7.99 -2.39 -0.02 2.65 16 42 H 0.07 3.58 4.43 -2.39 -0.01 3.57 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.03 1.61 8.00 -2.38 -0.02 1.59 16 45 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16 46 H 0.05 1.84 7.59 -2.39 -0.02 1.82 16 47 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.04 1.77 7.68 -2.39 -0.02 1.75 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 2.52 6.48 -2.39 -0.02 2.50 16 51 H 0.13 3.29 8.00 -2.91 -0.02 3.27 16 Total: -1.00 -63.36 395.62 -0.04 -63.40 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.24 Total: 23.02 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.55 Total: -3.63 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -5.72 Total: -105.16 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -2.14 Total: -22.98 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -63.36 -0.04 -63.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332021681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.526 kcal (2) G-P(sol) polarization free energy of solvation -63.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds