Wall clock time and date at job start Tue Mar 31 2020 19:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.46920 * 2 1 4 4 C 1.35713 * 116.99446 * 180.02562 * 3 2 1 5 5 C 1.38998 * 119.90361 * 180.02562 * 4 3 2 6 6 C 1.37704 * 120.08556 * 180.02562 * 5 4 3 7 7 C 1.39734 * 119.91218 * 359.97438 * 6 5 4 8 8 C 1.47597 * 120.09030 * 179.97438 * 7 6 5 9 9 O 1.21584 * 120.00198 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00149 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99976 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47119 * 34.99771 * 11 10 8 13 13 C 1.53000 * 109.47054 * 155.00344 * 11 10 8 14 14 N 1.46499 * 109.46840 * 304.99499 * 13 11 10 15 15 C 1.36936 * 120.00002 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00140 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00367 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00562 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99699 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47093 * 90.00457 * 19 17 15 21 21 H 1.48504 * 109.47189 * 210.00360 * 19 17 15 22 22 H 1.48500 * 109.47392 * 329.99935 * 19 17 15 23 23 C 1.53006 * 109.46878 * 274.99815 * 11 10 8 24 24 C 1.53003 * 109.47177 * 300.00264 * 23 11 10 25 25 C 1.53000 * 109.46846 * 60.00402 * 23 11 10 26 26 C 1.52996 * 109.46968 * 180.02562 * 23 11 10 27 27 C 1.39734 * 119.82314 * 0.26663 * 7 6 5 28 28 C 1.37701 * 119.90949 * 359.47060 * 27 7 6 29 29 H 1.09002 * 109.47007 * 299.99375 * 1 2 3 30 30 H 1.09001 * 109.47790 * 59.99683 * 1 2 3 31 31 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47007 * 240.00625 * 2 1 3 33 33 H 1.08998 * 109.47294 * 120.00221 * 2 1 3 34 34 H 1.08001 * 119.96074 * 0.02574 * 5 4 3 35 35 H 1.07995 * 120.04552 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99934 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47398 * 64.99825 * 13 11 10 38 38 H 1.09001 * 109.47194 * 185.00006 * 13 11 10 39 39 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 40 40 H 0.96993 * 120.00222 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.46966 * 60.00097 * 24 23 11 42 42 H 1.08998 * 109.46717 * 180.02562 * 24 23 11 43 43 H 1.09001 * 109.46640 * 300.00001 * 24 23 11 44 44 H 1.09001 * 109.47624 * 59.99715 * 25 23 11 45 45 H 1.09002 * 109.46642 * 179.97438 * 25 23 11 46 46 H 1.09002 * 109.47069 * 299.99434 * 25 23 11 47 47 H 1.09001 * 109.47336 * 59.99701 * 26 23 11 48 48 H 1.08998 * 109.47375 * 180.02562 * 26 23 11 49 49 H 1.09001 * 109.47456 * 299.99957 * 26 23 11 50 50 H 1.07999 * 120.04934 * 179.73090 * 27 7 6 51 51 H 1.08006 * 119.95619 * 180.25077 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 3.8809 2.8104 0.0000 6 6 5.2455 2.9951 -0.0011 7 6 6.0985 1.8882 -0.0022 8 6 7.5617 2.0816 -0.0039 9 8 8.0264 3.2052 -0.0049 10 7 8.3827 1.0128 -0.0044 11 6 9.8351 1.2048 -0.0056 12 1 10.0854 2.0870 0.5835 13 6 10.5125 -0.0244 0.6036 14 7 9.9579 -0.2776 1.9357 15 6 10.4147 -1.3337 2.6781 16 1 11.1841 -1.9798 2.2818 17 6 9.8888 -1.5741 3.9401 18 7 10.3282 -2.5889 4.6539 19 14 8.5585 -0.4563 4.6259 20 1 7.2238 -0.9820 4.2419 21 1 8.6652 -0.4103 6.1064 22 1 8.7289 0.9121 4.0747 23 6 10.3231 1.3961 -1.4431 24 6 9.9716 0.1577 -2.2700 25 6 9.6457 2.6253 -2.0522 26 6 11.8400 1.5960 -1.4443 27 6 5.5624 0.5978 -0.0078 28 6 4.1968 0.4216 -0.0012 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.2210 3.6654 0.0012 35 1 5.6560 3.9940 -0.0011 36 1 8.0120 0.1165 -0.0033 37 1 10.3356 -0.8903 -0.0343 38 1 11.5848 0.1543 0.6845 39 1 9.2671 0.3028 2.2919 40 1 9.9609 -2.7565 5.5358 41 1 8.8910 0.0149 -2.2691 42 1 10.3197 0.2938 -3.2939 43 1 10.4543 -0.7180 -1.8359 44 1 9.8960 3.5076 -1.4631 45 1 9.9937 2.7618 -3.0762 46 1 8.5651 2.4824 -2.0514 47 1 12.3223 0.7201 -1.0104 48 1 12.1876 1.7327 -2.4683 49 1 12.0908 2.4780 -0.8551 50 1 6.2183 -0.2602 -0.0130 51 1 3.7816 -0.5755 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332890382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:21 Heat of formation + Delta-G solvation = -44.781360 kcal Electronic energy + Delta-G solvation = -29777.713677 eV Core-core repulsion = 25870.577083 eV Total energy + Delta-G solvation = -3907.136594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68462 -39.91940 -38.00427 -36.85028 -34.60409 -33.45718 -32.30979 -31.38495 -31.07408 -29.94766 -28.05279 -27.16373 -26.72245 -24.53721 -23.84095 -23.24550 -21.98403 -21.29354 -20.40038 -18.84885 -18.54893 -17.93626 -17.11289 -16.45483 -16.38561 -15.64495 -15.53374 -15.04824 -14.62515 -14.29179 -14.06779 -13.90167 -13.87527 -13.69314 -13.56356 -13.43911 -13.08866 -13.01567 -12.78568 -12.55098 -12.24741 -12.19449 -12.01126 -11.94568 -11.86375 -11.54662 -11.41144 -11.23268 -11.02375 -11.00662 -10.88170 -10.74611 -10.54918 -10.31044 -10.01075 -9.69965 -9.63444 -9.25827 -8.93755 -8.74107 -8.38567 -7.27464 -5.80904 -3.16702 0.82404 1.16039 2.84436 2.92271 3.33487 3.38047 3.41419 3.44007 3.81796 4.45941 4.54612 4.56009 4.60410 4.71296 4.79695 4.83808 4.87029 5.00639 5.03654 5.10479 5.15642 5.27198 5.39843 5.42926 5.48049 5.49173 5.60712 5.63988 5.72592 5.77133 5.79457 5.86031 5.87531 5.95488 6.01287 6.08158 6.08612 6.12550 6.24820 6.26416 6.37001 6.39330 6.43935 6.48216 6.57548 6.67039 6.86972 7.09624 7.74938 7.94812 8.37730 8.43404 9.16984 9.89433 10.08959 11.37280 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008382 B = 0.004078 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.572018 B = 6864.697515 C = 9169.421535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.314 6.314 4 C 0.152 3.848 5 C -0.163 4.163 6 C -0.021 4.021 7 C -0.171 4.171 8 C 0.560 3.440 9 O -0.540 6.540 10 N -0.709 5.709 11 C 0.145 3.855 12 H 0.088 0.912 13 C 0.146 3.854 14 N -0.755 5.755 15 C -0.245 4.245 16 H 0.091 0.909 17 C 0.008 3.992 18 N -0.933 5.933 19 Si 0.879 3.121 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.075 4.075 24 C -0.142 4.142 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.042 4.042 28 C -0.216 4.216 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.401 0.599 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.132 0.868 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.507 7.014 -15.348 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.106 3.894 5 C -0.182 4.182 6 C -0.039 4.039 7 C -0.174 4.174 8 C 0.348 3.652 9 O -0.419 6.419 10 N -0.360 5.360 11 C 0.040 3.960 12 H 0.106 0.894 13 C 0.018 3.982 14 N -0.401 5.401 15 C -0.375 4.375 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.580 5.580 19 Si 0.709 3.291 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.077 4.077 24 C -0.200 4.200 25 C -0.187 4.187 26 C -0.199 4.199 27 C -0.061 4.061 28 C -0.235 4.235 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.237 0.763 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.150 0.850 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.182 7.727 -15.267 22.224 hybrid contribution -1.078 -0.093 0.744 1.314 sum -15.260 7.634 -14.522 22.406 Atomic orbital electron populations 1.21780 0.92589 1.03001 1.03535 1.22864 0.96006 0.81708 1.01841 1.86032 1.19024 1.29724 1.87962 1.19245 0.82264 0.94197 0.93703 1.20384 0.95019 0.94847 1.07944 1.21067 0.91428 0.99162 0.92291 1.19943 0.93584 0.93998 1.09917 1.18047 0.85970 0.84930 0.76250 1.90753 1.77263 1.23544 1.50343 1.45926 1.06869 1.09043 1.74167 1.21365 0.78779 1.00467 0.95356 0.89377 1.21091 0.96543 0.93610 0.86932 1.42728 1.47241 1.34701 1.15463 1.19039 1.17904 1.03436 0.97078 0.89120 1.24637 0.99552 0.97789 0.96812 1.69693 1.45630 1.30373 1.12333 0.86633 0.82728 0.81076 0.78663 1.21075 1.21643 1.20279 1.20882 0.95882 0.96075 0.94830 1.21924 1.01339 0.97560 0.99145 1.21889 1.00304 0.97318 0.99198 1.21895 0.94224 1.02308 1.01499 1.21191 0.94780 0.96468 0.93628 1.21180 0.94040 0.98356 1.09936 0.91451 0.91516 0.90227 0.91728 0.91617 0.84638 0.83945 0.76285 0.94516 0.93793 0.80461 0.93031 0.92935 0.93079 0.91785 0.91989 0.93935 0.92895 0.91769 0.92798 0.92546 0.85032 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.50 16 2 C 0.05 0.39 5.45 37.16 0.20 0.59 16 3 O -0.31 -3.34 10.12 -18.84 -0.19 -3.53 16 4 C 0.15 1.76 6.70 -39.02 -0.26 1.50 16 5 C -0.16 -1.88 9.97 -39.49 -0.39 -2.27 16 6 C -0.02 -0.26 9.58 -39.22 -0.38 -0.64 16 7 C -0.17 -2.38 5.87 -104.96 -0.62 -3.00 16 8 C 0.56 8.87 6.12 -12.44 -0.08 8.80 16 9 O -0.54 -9.73 13.46 5.29 0.07 -9.66 16 10 N -0.71 -10.77 3.59 -54.83 -0.20 -10.97 16 11 C 0.15 2.30 1.69 -67.92 -0.11 2.19 16 12 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 13 C 0.15 2.66 5.10 -4.04 -0.02 2.64 16 14 N -0.76 -17.43 5.24 -59.91 -0.31 -17.74 16 15 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 16 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 17 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 18 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 19 Si 0.88 22.31 27.73 -169.99 -4.71 17.59 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 23 C -0.08 -0.99 0.62 -154.51 -0.10 -1.09 16 24 C -0.14 -1.70 7.97 37.16 0.30 -1.41 16 25 C -0.13 -1.76 7.00 37.16 0.26 -1.50 16 26 C -0.14 -1.73 8.12 37.16 0.30 -1.43 16 27 C -0.04 -0.52 9.53 -39.22 -0.37 -0.89 16 28 C -0.22 -2.43 9.01 -39.50 -0.36 -2.79 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 33 H 0.07 0.48 7.65 -51.93 -0.40 0.09 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 36 H 0.40 5.70 6.62 -40.82 -0.27 5.43 16 37 H 0.04 0.65 6.17 -51.93 -0.32 0.33 16 38 H 0.04 0.82 6.71 -51.93 -0.35 0.47 16 39 H 0.36 8.47 5.20 -40.82 -0.21 8.25 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.05 0.62 7.60 -51.93 -0.39 0.22 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 44 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.77 5.77 -51.93 -0.30 0.47 16 47 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.13 1.47 6.40 -52.49 -0.34 1.14 16 51 H 0.13 1.21 6.28 -52.48 -0.33 0.88 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -32.87 396.92 -8.22 -41.09 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -8.13 Total: 12.04 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.50 Total: -6.59 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.26 Total: -56.93 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.12 Total: -13.19 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.87 -8.22 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332890382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.692 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds