Wall clock time and date at job start Tue Mar 31 2020 19:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.46920 * 2 1 4 4 C 1.35713 * 116.99446 * 180.02562 * 3 2 1 5 5 C 1.38998 * 119.90361 * 180.02562 * 4 3 2 6 6 C 1.37704 * 120.08556 * 180.02562 * 5 4 3 7 7 C 1.39734 * 119.91218 * 359.97438 * 6 5 4 8 8 C 1.47597 * 120.09030 * 179.97438 * 7 6 5 9 9 O 1.21584 * 120.00198 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00149 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99976 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47119 * 34.99771 * 11 10 8 13 13 C 1.53000 * 109.47054 * 155.00344 * 11 10 8 14 14 N 1.46499 * 109.46840 * 304.99499 * 13 11 10 15 15 C 1.36936 * 120.00002 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00140 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00367 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00562 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99699 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47093 * 90.00457 * 19 17 15 21 21 H 1.48504 * 109.47189 * 210.00360 * 19 17 15 22 22 H 1.48500 * 109.47392 * 329.99935 * 19 17 15 23 23 C 1.53006 * 109.46878 * 274.99815 * 11 10 8 24 24 C 1.53003 * 109.47177 * 300.00264 * 23 11 10 25 25 C 1.53000 * 109.46846 * 60.00402 * 23 11 10 26 26 C 1.52996 * 109.46968 * 180.02562 * 23 11 10 27 27 C 1.39734 * 119.82314 * 0.26663 * 7 6 5 28 28 C 1.37701 * 119.90949 * 359.47060 * 27 7 6 29 29 H 1.09002 * 109.47007 * 299.99375 * 1 2 3 30 30 H 1.09001 * 109.47790 * 59.99683 * 1 2 3 31 31 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47007 * 240.00625 * 2 1 3 33 33 H 1.08998 * 109.47294 * 120.00221 * 2 1 3 34 34 H 1.08001 * 119.96074 * 0.02574 * 5 4 3 35 35 H 1.07995 * 120.04552 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99934 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47398 * 64.99825 * 13 11 10 38 38 H 1.09001 * 109.47194 * 185.00006 * 13 11 10 39 39 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 40 40 H 0.96993 * 120.00222 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.46966 * 60.00097 * 24 23 11 42 42 H 1.08998 * 109.46717 * 180.02562 * 24 23 11 43 43 H 1.09001 * 109.46640 * 300.00001 * 24 23 11 44 44 H 1.09001 * 109.47624 * 59.99715 * 25 23 11 45 45 H 1.09002 * 109.46642 * 179.97438 * 25 23 11 46 46 H 1.09002 * 109.47069 * 299.99434 * 25 23 11 47 47 H 1.09001 * 109.47336 * 59.99701 * 26 23 11 48 48 H 1.08998 * 109.47375 * 180.02562 * 26 23 11 49 49 H 1.09001 * 109.47456 * 299.99957 * 26 23 11 50 50 H 1.07999 * 120.04934 * 179.73090 * 27 7 6 51 51 H 1.08006 * 119.95619 * 180.25077 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 3.8809 2.8104 0.0000 6 6 5.2455 2.9951 -0.0011 7 6 6.0985 1.8882 -0.0022 8 6 7.5617 2.0816 -0.0039 9 8 8.0264 3.2052 -0.0049 10 7 8.3827 1.0128 -0.0044 11 6 9.8351 1.2048 -0.0056 12 1 10.0854 2.0870 0.5835 13 6 10.5125 -0.0244 0.6036 14 7 9.9579 -0.2776 1.9357 15 6 10.4147 -1.3337 2.6781 16 1 11.1841 -1.9798 2.2818 17 6 9.8888 -1.5741 3.9401 18 7 10.3282 -2.5889 4.6539 19 14 8.5585 -0.4563 4.6259 20 1 7.2238 -0.9820 4.2419 21 1 8.6652 -0.4103 6.1064 22 1 8.7289 0.9121 4.0747 23 6 10.3231 1.3961 -1.4431 24 6 9.9716 0.1577 -2.2700 25 6 9.6457 2.6253 -2.0522 26 6 11.8400 1.5960 -1.4443 27 6 5.5624 0.5978 -0.0078 28 6 4.1968 0.4216 -0.0012 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.2210 3.6654 0.0012 35 1 5.6560 3.9940 -0.0011 36 1 8.0120 0.1165 -0.0033 37 1 10.3356 -0.8903 -0.0343 38 1 11.5848 0.1543 0.6845 39 1 9.2671 0.3028 2.2919 40 1 9.9609 -2.7565 5.5358 41 1 8.8910 0.0149 -2.2691 42 1 10.3197 0.2938 -3.2939 43 1 10.4543 -0.7180 -1.8359 44 1 9.8960 3.5076 -1.4631 45 1 9.9937 2.7618 -3.0762 46 1 8.5651 2.4824 -2.0514 47 1 12.3223 0.7201 -1.0104 48 1 12.1876 1.7327 -2.4683 49 1 12.0908 2.4780 -0.8551 50 1 6.2183 -0.2602 -0.0130 51 1 3.7816 -0.5755 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332890382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:20 Heat of formation + Delta-G solvation = -64.741316 kcal Electronic energy + Delta-G solvation = -29778.579206 eV Core-core repulsion = 25870.577083 eV Total energy + Delta-G solvation = -3908.002123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.73351 -40.91475 -39.06520 -37.92246 -36.34122 -34.77163 -33.42422 -32.89679 -32.00453 -30.93128 -29.53991 -28.14853 -27.82221 -25.73585 -24.96435 -24.41383 -23.16755 -22.57978 -21.50494 -20.12254 -19.78931 -19.26197 -18.41202 -17.48277 -17.13534 -17.00791 -16.58743 -16.32586 -16.12469 -15.80397 -15.15657 -15.13074 -14.81416 -14.70368 -14.66964 -14.50159 -14.46956 -14.25509 -13.83509 -13.68909 -13.35161 -13.24194 -13.10895 -13.00870 -12.90072 -12.79880 -12.67391 -12.53295 -12.35989 -12.20795 -12.02198 -11.84615 -11.81449 -11.70126 -11.61676 -11.30978 -11.03993 -10.89005 -10.16399 -9.98281 -9.31232 -9.30510 -8.04546 -5.36913 -0.15789 0.25864 1.32539 1.36182 1.41608 1.83479 2.11105 2.19683 2.43833 2.80266 3.27556 3.46056 3.63945 3.70225 3.79855 3.86360 4.02405 4.03941 4.04472 4.08315 4.17358 4.29998 4.33502 4.36498 4.42744 4.50010 4.61833 4.82619 4.83233 4.84742 4.87930 4.89147 4.93071 4.97106 5.04004 5.06970 5.08947 5.13146 5.15454 5.24562 5.25426 5.29503 5.33436 5.42734 5.55276 5.57374 5.63650 5.76192 6.19374 6.30339 6.55159 7.05439 7.22896 7.81391 7.99363 9.16874 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008382 B = 0.004078 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.572018 B = 6864.697515 C = 9169.421535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.152 3.848 5 C -0.166 4.166 6 C -0.026 4.026 7 C -0.192 4.192 8 C 0.559 3.441 9 O -0.569 6.569 10 N -0.707 5.707 11 C 0.154 3.846 12 H 0.064 0.936 13 C 0.146 3.854 14 N -0.757 5.757 15 C -0.227 4.227 16 H 0.066 0.934 17 C -0.053 4.053 18 N -0.979 5.979 19 Si 0.942 3.058 20 H -0.271 1.271 21 H -0.297 1.297 22 H -0.270 1.270 23 C -0.069 4.069 24 C -0.139 4.139 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.045 4.045 28 C -0.216 4.216 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.407 0.593 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.362 0.638 40 H 0.258 0.742 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.049 0.951 50 H 0.141 0.859 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 7.113 -16.912 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.236 6.236 4 C 0.106 3.894 5 C -0.184 4.184 6 C -0.045 4.045 7 C -0.196 4.196 8 C 0.349 3.651 9 O -0.450 6.450 10 N -0.358 5.358 11 C 0.049 3.951 12 H 0.082 0.918 13 C 0.020 3.980 14 N -0.403 5.403 15 C -0.358 4.358 16 H 0.084 0.916 17 C -0.245 4.245 18 N -0.630 5.630 19 Si 0.770 3.230 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.196 1.196 23 C -0.071 4.071 24 C -0.196 4.196 25 C -0.178 4.178 26 C -0.198 4.198 27 C -0.064 4.064 28 C -0.235 4.235 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.244 0.756 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.195 0.805 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.068 0.932 50 H 0.159 0.841 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.978 7.834 -16.880 24.528 hybrid contribution -0.538 -0.146 1.149 1.277 sum -16.516 7.688 -15.730 24.070 Atomic orbital electron populations 1.21810 0.91282 1.04234 1.03322 1.23170 0.97113 0.80474 1.02662 1.86041 1.18330 1.31687 1.87570 1.19391 0.82908 0.94290 0.92834 1.20562 0.94686 0.95748 1.07412 1.21114 0.91977 0.98892 0.92539 1.19887 0.92395 0.95156 1.12124 1.18357 0.86849 0.84462 0.75477 1.90734 1.77912 1.24546 1.51792 1.45875 1.06487 1.09328 1.74070 1.21187 0.79252 0.97952 0.96692 0.91802 1.21240 0.96551 0.95247 0.84944 1.42741 1.47244 1.33467 1.16830 1.19040 1.16217 1.03439 0.97075 0.91626 1.25302 1.02279 0.99455 0.97487 1.69845 1.47696 1.32627 1.12816 0.85617 0.80582 0.79460 0.77321 1.19703 1.22384 1.19609 1.20843 0.96437 0.96779 0.93044 1.21892 1.01492 0.96403 0.99808 1.21779 0.99597 0.96509 0.99929 1.21895 0.93362 1.01861 1.02709 1.21323 0.95549 0.96074 0.93432 1.21422 0.93495 0.99461 1.09110 0.91910 0.91492 0.88270 0.90454 0.91187 0.82989 0.84162 0.75648 0.93106 0.93778 0.80475 0.93334 0.92793 0.91271 0.92095 0.93869 0.91988 0.93987 0.92095 0.90736 0.93196 0.84118 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.04 0.51 5.45 71.98 0.39 0.91 16 3 O -0.32 -6.17 10.12 -90.35 -0.91 -7.09 16 4 C 0.15 3.23 6.70 22.63 0.15 3.38 16 5 C -0.17 -3.57 9.97 22.33 0.22 -3.35 16 6 C -0.03 -0.65 9.58 22.51 0.22 -0.44 16 7 C -0.19 -5.21 5.87 -20.08 -0.12 -5.33 16 8 C 0.56 17.54 6.12 86.71 0.53 18.07 16 9 O -0.57 -20.70 13.46 -3.98 -0.05 -20.75 16 10 N -0.71 -20.91 3.59 -445.63 -1.60 -22.51 16 11 C 0.15 4.80 1.69 44.99 0.08 4.87 16 12 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 13 C 0.15 5.23 5.10 86.38 0.44 5.67 16 14 N -0.76 -34.47 5.24 -343.45 -1.80 -36.27 16 15 C -0.23 -12.57 10.47 84.03 0.88 -11.69 16 16 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 17 C -0.05 -3.10 5.50 84.86 0.47 -2.63 16 18 N -0.98 -61.80 13.97 21.65 0.30 -61.50 16 19 Si 0.94 46.15 27.73 68.60 1.90 48.06 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 22 H -0.27 -12.81 6.52 99.48 0.65 -12.16 16 23 C -0.07 -1.74 0.62 -52.18 -0.03 -1.77 16 24 C -0.14 -2.99 7.97 71.98 0.57 -2.42 16 25 C -0.12 -3.14 7.00 71.98 0.50 -2.63 16 26 C -0.14 -3.22 8.12 71.98 0.58 -2.64 16 27 C -0.05 -1.04 9.53 22.50 0.21 -0.83 16 28 C -0.22 -4.38 9.01 22.32 0.20 -4.17 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.08 0.80 7.65 -2.39 -0.02 0.78 16 33 H 0.07 0.84 7.65 -2.39 -0.02 0.83 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.14 3.44 7.64 -2.91 -0.02 3.42 16 36 H 0.41 11.05 6.62 -92.71 -0.61 10.43 16 37 H 0.05 1.72 6.17 -2.39 -0.01 1.71 16 38 H 0.04 1.62 6.71 -2.39 -0.02 1.60 16 39 H 0.36 16.56 5.20 -92.71 -0.48 16.08 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.05 1.15 7.60 -2.39 -0.02 1.13 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.36 6.32 -2.39 -0.02 1.34 16 44 H 0.04 1.28 7.53 -2.39 -0.02 1.26 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.04 1.18 5.77 -2.39 -0.01 1.16 16 47 H 0.06 1.43 6.54 -2.39 -0.02 1.41 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.14 2.89 6.40 -2.91 -0.02 2.87 16 51 H 0.16 2.35 6.28 -2.91 -0.02 2.33 16 Total: -1.00 -70.68 396.92 3.67 -67.01 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.21 Total: 38.69 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 6.04 Total: -5.65 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -3.10 Total: -120.28 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.97 Total: -27.84 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.06 kcal Total: -70.68 3.67 -67.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332890382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.273 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds