Wall clock time and date at job start Tue Mar 31 2020 19:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47631 * 2 1 4 4 C 1.35703 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.39000 * 119.91207 * 0.24961 * 4 3 2 6 6 C 1.37701 * 120.09025 * 180.25632 * 5 4 3 7 7 C 1.39740 * 119.91009 * 359.49185 * 6 5 4 8 8 C 1.47593 * 120.08983 * 180.22975 * 7 6 5 9 9 O 1.21587 * 119.99923 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00311 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00361 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46768 * 324.99535 * 11 10 8 13 13 C 1.53002 * 109.46985 * 204.99765 * 11 10 8 14 14 N 1.46501 * 109.47057 * 55.00133 * 13 11 10 15 15 C 1.36935 * 120.00079 * 179.97438 * 14 13 11 16 16 H 1.08007 * 119.99498 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00169 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00496 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99891 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47351 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47279 * 120.00347 * 19 17 15 22 22 H 1.48508 * 109.46919 * 239.99795 * 19 17 15 23 23 C 1.52996 * 109.47302 * 84.99923 * 11 10 8 24 24 C 1.52999 * 109.47221 * 59.99836 * 23 11 10 25 25 C 1.52996 * 109.47434 * 180.02562 * 23 11 10 26 26 C 1.53002 * 109.46971 * 299.99850 * 23 11 10 27 27 C 1.39733 * 119.82382 * 0.26122 * 7 6 5 28 28 C 1.37700 * 119.91015 * 359.97438 * 27 7 6 29 29 H 1.08992 * 109.47342 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47248 * 300.00403 * 1 2 3 31 31 H 1.09007 * 109.46527 * 60.00028 * 1 2 3 32 32 H 1.09006 * 109.47102 * 239.99876 * 2 1 3 33 33 H 1.08999 * 109.46684 * 120.00250 * 2 1 3 34 34 H 1.08004 * 119.95753 * 0.02705 * 5 4 3 35 35 H 1.08002 * 120.04909 * 179.77735 * 6 5 4 36 36 H 0.97003 * 119.99758 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.46832 * 174.99582 * 13 11 10 38 38 H 1.08997 * 109.47513 * 294.99811 * 13 11 10 39 39 H 0.96999 * 120.00079 * 359.97438 * 14 13 11 40 40 H 0.96994 * 120.00809 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.46980 * 60.00533 * 24 23 11 42 42 H 1.09001 * 109.47038 * 179.97438 * 24 23 11 43 43 H 1.08995 * 109.47450 * 300.00295 * 24 23 11 44 44 H 1.09008 * 109.46969 * 59.99756 * 25 23 11 45 45 H 1.09001 * 109.47526 * 179.97438 * 25 23 11 46 46 H 1.09004 * 109.47108 * 300.00229 * 25 23 11 47 47 H 1.09004 * 109.47038 * 60.00144 * 26 23 11 48 48 H 1.08998 * 109.47503 * 179.97438 * 26 23 11 49 49 H 1.08994 * 109.47500 * 300.00112 * 26 23 11 50 50 H 1.08003 * 120.04711 * 180.02562 * 27 7 6 51 51 H 1.08009 * 119.95857 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5249 0.0005 5 6 4.1968 0.4213 -0.0042 6 6 5.5625 0.5974 0.0017 7 6 6.0987 1.8878 0.0016 8 6 7.5619 2.0811 0.0028 9 8 8.3025 1.1168 0.0033 10 7 8.0771 3.3265 0.0033 11 6 9.5295 3.5184 0.0039 12 1 9.9997 2.7313 0.5934 13 6 9.8636 4.8811 0.6139 14 7 9.2607 4.9812 1.9453 15 6 9.4265 6.1195 2.6883 16 1 10.0022 6.9433 2.2928 17 6 8.8548 6.2145 3.9495 18 7 8.1536 5.2104 4.4317 19 14 9.0805 7.7677 4.9627 20 1 9.9043 8.7403 4.2009 21 1 7.7528 8.3650 5.2555 22 1 9.7642 7.4320 6.2376 23 6 10.0522 3.4609 -1.4329 24 6 9.3921 4.5657 -2.2603 25 6 11.5690 3.6606 -1.4323 26 6 9.7181 2.0981 -2.0430 27 6 5.2458 2.9947 0.0012 28 6 3.8813 2.8101 0.0002 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7816 -0.5758 -0.0087 35 1 6.2184 -0.2607 0.0016 36 1 7.4863 4.0958 0.0025 37 1 10.9454 4.9870 0.6961 38 1 9.4686 5.6716 -0.0242 39 1 8.7439 4.2412 2.3006 40 1 7.7544 5.2767 5.3132 41 1 9.6302 5.5365 -1.8258 42 1 9.7648 4.5250 -3.2838 43 1 8.3115 4.4230 -2.2608 44 1 12.0390 2.8732 -0.8429 45 1 11.9415 3.6192 -2.4559 46 1 11.8075 4.6313 -0.9975 47 1 8.6374 1.9553 -2.0434 48 1 10.0900 2.0572 -3.0667 49 1 10.1883 1.3110 -1.4536 50 1 5.6564 3.9937 0.0008 51 1 3.2213 3.6652 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332890385.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:24 Heat of formation + Delta-G solvation = -48.310128 kcal Electronic energy + Delta-G solvation = -29557.020889 eV Core-core repulsion = 25649.731276 eV Total energy + Delta-G solvation = -3907.289613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53941 -39.78272 -37.86985 -36.71278 -34.40904 -33.27201 -32.25637 -31.24886 -30.80911 -29.76558 -27.66283 -27.09317 -26.58424 -24.42762 -23.97364 -23.01496 -21.94730 -21.41788 -20.22660 -18.72499 -18.37236 -17.58107 -16.87137 -16.37488 -16.14147 -15.49973 -15.44879 -14.89843 -14.65455 -14.16391 -13.91001 -13.85854 -13.60406 -13.57610 -13.45399 -13.34258 -13.11076 -12.94930 -12.68144 -12.43072 -12.09378 -12.08273 -11.94667 -11.83337 -11.76172 -11.33110 -11.19048 -11.08571 -10.92426 -10.87367 -10.82140 -10.68968 -10.46228 -10.18260 -9.89377 -9.73267 -9.53794 -9.11971 -8.88881 -8.56895 -8.23816 -6.93225 -5.76558 -3.06294 0.97172 1.30833 2.94035 3.08379 3.42478 3.48298 3.50636 3.55521 3.98064 4.56824 4.57469 4.59735 4.71556 4.82039 4.91541 4.97598 4.99138 5.11600 5.13298 5.21072 5.26399 5.37946 5.44994 5.53633 5.56071 5.61704 5.69695 5.75458 5.82493 5.93107 5.94730 5.95793 6.07384 6.12615 6.14109 6.16534 6.20259 6.23700 6.35132 6.38062 6.50242 6.50462 6.54133 6.59453 6.69316 6.77951 7.02573 7.22018 7.69449 7.93980 8.41017 8.61583 9.52918 10.09562 10.44833 11.45583 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008622 B = 0.003529 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.665479 B = 7932.988905 C =10471.513279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.150 3.850 5 C -0.221 4.221 6 C -0.020 4.020 7 C -0.167 4.167 8 C 0.563 3.437 9 O -0.545 6.545 10 N -0.703 5.703 11 C 0.150 3.850 12 H 0.087 0.913 13 C 0.141 3.859 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.929 5.929 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.076 4.076 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.039 4.039 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.402 0.598 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.040 0.960 49 H 0.061 0.939 50 H 0.136 0.864 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 -9.442 -14.639 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.104 3.896 5 C -0.240 4.240 6 C -0.039 4.039 7 C -0.170 4.170 8 C 0.350 3.650 9 O -0.424 6.424 10 N -0.354 5.354 11 C 0.045 3.955 12 H 0.105 0.895 13 C 0.013 3.987 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.078 4.078 24 C -0.199 4.199 25 C -0.198 4.198 26 C -0.187 4.187 27 C -0.058 4.058 28 C -0.177 4.177 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.237 0.763 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.080 0.920 50 H 0.154 0.846 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.343 -9.803 -14.577 19.896 hybrid contribution -0.334 0.767 0.899 1.228 sum -9.677 -9.035 -13.678 19.036 Atomic orbital electron populations 1.21779 0.92692 1.02861 1.03606 1.22826 0.95918 0.81908 1.01637 1.86031 1.19164 1.29492 1.88068 1.19222 0.82146 0.94223 0.93994 1.21164 0.94050 0.98081 1.10714 1.21021 0.94054 0.96735 0.92087 1.19933 0.93425 0.94145 1.09488 1.17999 0.87388 0.83440 0.76132 1.90740 1.60780 1.40170 1.50701 1.45837 1.08135 1.07557 1.73822 1.21280 0.79763 0.99643 0.94849 0.89489 1.21102 0.97037 0.92514 0.87998 1.42378 1.62795 1.18687 1.13774 1.19239 1.27145 0.93801 0.97016 0.91154 1.24741 1.00582 0.97793 0.97696 1.69675 1.38913 1.30810 1.18344 0.86146 0.77205 0.82666 0.80316 1.20593 1.21899 1.21920 1.20894 0.95673 0.96028 0.95166 1.21915 1.00389 0.98589 0.99003 1.21886 0.94327 1.02292 1.01319 1.21886 1.01674 0.96074 0.99043 1.21198 0.92300 0.98664 0.93636 1.20348 0.95088 0.94887 1.07405 0.90358 0.91405 0.91521 0.91886 0.91765 0.85138 0.84483 0.76257 0.94712 0.95407 0.78011 0.93564 0.91914 0.93226 0.92883 0.92576 0.92940 0.91911 0.92868 0.94088 0.91997 0.84637 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.41 5.45 37.16 0.20 0.62 16 3 O -0.31 -3.57 10.12 -18.81 -0.19 -3.76 16 4 C 0.15 1.87 6.70 -39.02 -0.26 1.61 16 5 C -0.22 -2.62 9.01 -39.50 -0.36 -2.97 16 6 C -0.02 -0.27 9.58 -39.22 -0.38 -0.65 16 7 C -0.17 -2.50 5.87 -104.96 -0.62 -3.12 16 8 C 0.56 9.55 6.12 -12.45 -0.08 9.48 16 9 O -0.54 -10.43 13.46 5.29 0.07 -10.36 16 10 N -0.70 -11.47 3.59 -54.83 -0.20 -11.67 16 11 C 0.15 2.53 1.69 -67.93 -0.11 2.41 16 12 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 13 C 0.14 2.72 5.10 -4.04 -0.02 2.70 16 14 N -0.73 -17.98 5.43 -59.91 -0.33 -18.30 16 15 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C -0.08 -1.06 0.62 -154.51 -0.10 -1.16 16 24 C -0.14 -1.79 7.97 37.16 0.30 -1.49 16 25 C -0.14 -1.81 8.12 37.16 0.30 -1.51 16 26 C -0.13 -1.85 7.00 37.16 0.26 -1.59 16 27 C -0.04 -0.53 9.53 -39.22 -0.37 -0.91 16 28 C -0.16 -2.02 9.97 -39.50 -0.39 -2.42 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.43 7.64 -51.93 -0.40 0.03 16 33 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 34 H 0.13 1.19 6.28 -52.48 -0.33 0.86 16 35 H 0.14 1.82 7.64 -52.49 -0.40 1.41 16 36 H 0.40 6.26 6.62 -40.82 -0.27 5.99 16 37 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 38 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 39 H 0.39 10.23 7.33 -40.82 -0.30 9.93 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.66 7.60 -51.93 -0.39 0.27 16 44 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.82 6.55 -51.93 -0.34 0.48 16 47 H 0.05 0.81 5.78 -51.93 -0.30 0.51 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.97 7.53 -51.93 -0.39 0.58 16 50 H 0.14 1.69 6.39 -52.48 -0.34 1.36 16 51 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -32.06 400.05 -8.57 -40.64 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -8.17 Total: 14.15 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.49 Total: -6.72 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.20 Total: -57.19 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.12 Total: -14.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.06 -8.57 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332890385.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.671 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds