Wall clock time and date at job start Tue Mar 31 2020 19:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47185 * 2 1 4 4 C 1.35902 * 117.00346 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05655 * 180.02562 * 4 3 2 6 6 C 1.38146 * 119.94303 * 180.02562 * 5 4 3 7 7 C 1.38270 * 120.05580 * 0.02562 * 6 5 4 8 8 C 1.50691 * 119.94371 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47545 * 89.99721 * 8 7 6 10 10 N 1.46493 * 109.47239 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00171 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99723 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00420 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.46753 * 40.00082 * 13 11 10 15 15 N 1.46898 * 109.47192 * 160.00127 * 13 11 10 16 16 C 1.52992 * 109.47482 * 280.00353 * 13 11 10 17 17 C 1.52997 * 109.47482 * 174.99860 * 16 13 11 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 C 1.38265 * 120.10850 * 0.25309 * 7 6 5 28 28 C 1.38140 * 120.05657 * 359.45282 * 27 7 6 29 29 H 1.09000 * 109.47141 * 59.99737 * 1 2 3 30 30 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47141 * 300.00179 * 1 2 3 32 32 H 1.08998 * 109.47292 * 240.00350 * 2 1 3 33 33 H 1.09000 * 109.47517 * 119.99584 * 2 1 3 34 34 H 1.07999 * 120.02908 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.97483 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47367 * 329.99793 * 8 7 6 37 37 H 1.08999 * 109.47164 * 209.99734 * 8 7 6 38 38 H 1.08998 * 109.46729 * 59.99682 * 9 8 7 39 39 H 1.08999 * 109.46900 * 300.00175 * 9 8 7 40 40 H 0.97000 * 120.00375 * 0.02562 * 10 9 8 41 41 H 1.00899 * 111.00057 * 59.99855 * 15 13 11 42 42 H 1.00898 * 110.99947 * 183.96241 * 15 13 11 43 43 H 1.09002 * 109.47103 * 54.99613 * 16 13 11 44 44 H 1.08998 * 109.46862 * 295.00425 * 16 13 11 45 45 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 46 46 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 47 47 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 48 48 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 49 49 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 50 50 H 1.08008 * 119.96708 * 179.71095 * 27 7 6 51 51 H 1.08004 * 120.02821 * 180.25196 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0011 6 6 5.2550 2.9852 0.0011 7 6 6.0962 1.8879 0.0000 8 6 7.5901 2.0854 -0.0005 9 6 8.0965 2.1514 1.4418 10 7 9.5489 2.3427 1.4412 11 6 10.2175 2.4308 2.6081 12 8 9.6168 2.3511 3.6587 13 6 11.7115 2.6282 2.6075 14 1 11.9848 3.3309 1.8203 15 7 12.1355 3.1617 3.9089 16 6 12.4032 1.2869 2.3564 17 6 13.9122 1.5065 2.2316 18 6 14.6037 0.1652 1.9798 19 6 16.0901 0.3815 1.8576 20 1 16.5004 1.3763 1.9498 21 6 16.9262 -0.6905 1.6280 22 7 16.4267 -1.9019 1.5162 23 14 18.7686 -0.4223 1.4758 24 1 19.3979 -0.5369 2.8161 25 1 19.3448 -1.4475 0.5692 26 1 19.0277 0.9307 0.9213 27 6 5.5689 0.6097 -0.0064 28 6 4.1998 0.4261 -0.0002 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2284 3.6643 0.0007 35 1 5.6692 3.9826 0.0012 36 1 7.8335 3.0156 -0.5139 37 1 8.0667 1.2510 -0.5151 38 1 7.8531 1.2212 1.9552 39 1 7.6199 2.9857 1.9563 40 1 10.0293 2.4068 0.6009 41 1 11.8932 2.5280 4.6557 42 1 13.1240 3.3635 3.9122 43 1 12.0223 0.8488 1.4338 44 1 12.2017 0.6128 3.1888 45 1 14.2931 1.9446 3.1542 46 1 14.1136 2.1807 1.3991 47 1 14.4024 -0.5093 2.8121 48 1 14.2228 -0.2725 1.0572 49 1 17.0149 -2.6562 1.3551 50 1 6.2282 -0.2458 -0.0119 51 1 3.7884 -0.5726 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345738764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:14 Heat of formation + Delta-G solvation = -83.889301 kcal Electronic energy + Delta-G solvation = -26987.789217 eV Core-core repulsion = 23078.956775 eV Total energy + Delta-G solvation = -3908.832442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57327 -39.79578 -38.29710 -36.15833 -35.29417 -33.35934 -32.86816 -31.71695 -31.24730 -31.23423 -28.56461 -27.52475 -25.42261 -24.49843 -23.55562 -22.45100 -22.17365 -21.24516 -20.24513 -19.99088 -18.66949 -17.32152 -16.55640 -16.49431 -16.33255 -16.32025 -15.56252 -15.37887 -14.91872 -14.70113 -14.53357 -14.51359 -14.20797 -13.88179 -13.84963 -13.61702 -13.50321 -13.11537 -13.00422 -12.73680 -12.47771 -12.19704 -12.04639 -11.94897 -11.86435 -11.81874 -11.56553 -11.21679 -11.07991 -11.07541 -10.82860 -10.73279 -10.57901 -9.82215 -9.75857 -9.39096 -9.35695 -9.14962 -9.10555 -8.48491 -8.42643 -8.38533 -6.04206 -4.07195 0.99150 1.04248 2.76226 2.77125 3.09299 3.29044 3.35561 3.38460 3.41746 4.34893 4.42027 4.42266 4.48357 4.54922 4.56105 4.73034 4.74191 4.79953 4.86771 4.93672 4.97743 5.02619 5.18690 5.23524 5.26618 5.28107 5.31785 5.33578 5.40112 5.53410 5.59654 5.72443 5.76395 5.80075 5.91815 5.97300 6.00341 6.25284 6.29259 6.37212 6.42081 6.56678 6.72878 7.01138 7.02892 7.17783 7.51901 7.61019 7.62264 7.74167 7.94835 8.30593 8.36851 8.99941 9.57417 11.06948 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.001521 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.242573 B =18409.548124 C =19276.737588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.126 3.874 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.117 4.117 8 C -0.088 4.088 9 C 0.126 3.874 10 N -0.735 5.735 11 C 0.524 3.476 12 O -0.535 6.535 13 C 0.076 3.924 14 H 0.099 0.901 15 N -0.831 5.831 16 C -0.146 4.146 17 C -0.109 4.109 18 C 0.022 3.978 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.072 4.072 28 C -0.207 4.207 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.402 0.598 41 H 0.349 0.651 42 H 0.351 0.649 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.261 0.739 50 H 0.127 0.873 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.430 6.795 -6.069 30.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.081 3.919 5 C -0.170 4.170 6 C -0.091 4.091 7 C -0.118 4.118 8 C -0.126 4.126 9 C 0.002 3.998 10 N -0.388 5.388 11 C 0.310 3.690 12 O -0.410 6.410 13 C -0.040 4.040 14 H 0.117 0.883 15 N -0.363 5.363 16 C -0.186 4.186 17 C -0.147 4.147 18 C -0.015 4.015 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.090 4.090 28 C -0.225 4.225 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.236 0.764 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.033 0.967 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.145 0.855 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -30.489 7.301 -5.467 31.824 hybrid contribution 1.916 -1.180 -0.525 2.310 sum -28.574 6.121 -5.992 29.830 Atomic orbital electron populations 1.21779 0.92663 1.02951 1.03556 1.22794 0.95939 0.81909 1.01497 1.86065 1.19114 1.29400 1.88633 1.19018 0.82237 0.94216 0.96396 1.20422 0.95213 0.94829 1.06495 1.20894 0.92064 0.98803 0.97326 1.19571 0.94978 0.93179 1.04102 1.20724 0.91660 1.03644 0.96526 1.21280 0.80156 1.02229 0.96097 1.45996 1.08151 1.75671 1.09031 1.20737 0.89821 0.75124 0.83320 1.90663 1.70001 1.48999 1.31369 1.21435 0.90420 0.97499 0.94615 0.88310 1.58684 1.23036 1.51214 1.03343 1.22403 0.98293 0.95452 1.02475 1.21654 0.91255 1.01457 1.00299 1.19083 0.94736 0.90771 0.96958 1.21249 0.92164 0.93583 1.49089 0.92674 1.25028 0.98835 0.95227 0.95334 1.69960 1.35158 0.98756 1.49557 0.86599 0.85530 0.77920 0.77990 1.20644 1.21219 1.19851 1.20895 0.94315 0.96881 0.96875 1.21235 0.94322 0.98076 1.08917 0.91506 0.90292 0.91471 0.91994 0.91938 0.85196 0.85179 0.90178 0.90105 0.91523 0.91465 0.76420 0.83742 0.83377 0.91595 0.91798 0.93328 0.93034 0.96715 0.96623 0.92985 0.85524 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.26 16 2 C 0.05 0.31 5.46 37.16 0.20 0.52 16 3 O -0.32 -2.82 10.14 -19.43 -0.20 -3.02 16 4 C 0.13 1.16 6.69 -39.22 -0.26 0.90 16 5 C -0.15 -1.30 9.99 -39.43 -0.39 -1.70 16 6 C -0.07 -0.58 9.69 -39.60 -0.38 -0.97 16 7 C -0.12 -0.97 5.13 -104.60 -0.54 -1.51 16 8 C -0.09 -0.64 5.46 -27.88 -0.15 -0.79 16 9 C 0.13 1.25 5.66 -4.04 -0.02 1.23 16 10 N -0.74 -7.93 5.56 -60.30 -0.33 -8.26 16 11 C 0.52 7.55 7.08 -10.98 -0.08 7.48 16 12 O -0.53 -9.67 16.25 5.55 0.09 -9.58 16 13 C 0.08 1.04 3.21 -68.87 -0.22 0.82 16 14 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 15 N -0.83 -11.82 8.94 -5.66 -0.05 -11.87 16 16 C -0.15 -2.31 4.84 -26.74 -0.13 -2.44 16 17 C -0.11 -2.06 4.92 -26.73 -0.13 -2.20 16 18 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 19 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 20 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 23 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.07 -0.59 9.69 -39.61 -0.38 -0.98 16 28 C -0.21 -1.72 9.04 -39.43 -0.36 -2.08 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 3.33 8.47 -40.82 -0.35 2.98 16 41 H 0.35 5.17 8.58 -39.29 -0.34 4.83 16 42 H 0.35 4.67 7.55 -39.29 -0.30 4.37 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.89 6.87 -51.93 -0.36 0.54 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 50 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 51 H 0.13 0.83 6.30 -52.48 -0.33 0.50 16 LS Contribution 420.75 15.07 6.34 6.34 Total: -1.00 -33.88 420.75 -10.22 -44.10 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.76 Total: 6.72 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.02 Total: -14.88 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.35 Total: -46.04 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.11 Total: -12.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.88 -10.22 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345738764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.789 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds