Wall clock time and date at job start Tue Mar 31 2020 19:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47185 * 2 1 4 4 C 1.35902 * 117.00346 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05655 * 180.02562 * 4 3 2 6 6 C 1.38146 * 119.94303 * 180.02562 * 5 4 3 7 7 C 1.38270 * 120.05580 * 0.02562 * 6 5 4 8 8 C 1.50691 * 119.94371 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47545 * 89.99721 * 8 7 6 10 10 N 1.46493 * 109.47239 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00171 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99723 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00420 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.46753 * 40.00082 * 13 11 10 15 15 N 1.46898 * 109.47192 * 160.00127 * 13 11 10 16 16 C 1.52992 * 109.47482 * 280.00353 * 13 11 10 17 17 C 1.52997 * 109.47482 * 174.99860 * 16 13 11 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 C 1.38265 * 120.10850 * 0.25309 * 7 6 5 28 28 C 1.38140 * 120.05657 * 359.45282 * 27 7 6 29 29 H 1.09000 * 109.47141 * 59.99737 * 1 2 3 30 30 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47141 * 300.00179 * 1 2 3 32 32 H 1.08998 * 109.47292 * 240.00350 * 2 1 3 33 33 H 1.09000 * 109.47517 * 119.99584 * 2 1 3 34 34 H 1.07999 * 120.02908 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.97483 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47367 * 329.99793 * 8 7 6 37 37 H 1.08999 * 109.47164 * 209.99734 * 8 7 6 38 38 H 1.08998 * 109.46729 * 59.99682 * 9 8 7 39 39 H 1.08999 * 109.46900 * 300.00175 * 9 8 7 40 40 H 0.97000 * 120.00375 * 0.02562 * 10 9 8 41 41 H 1.00899 * 111.00057 * 59.99855 * 15 13 11 42 42 H 1.00898 * 110.99947 * 183.96241 * 15 13 11 43 43 H 1.09002 * 109.47103 * 54.99613 * 16 13 11 44 44 H 1.08998 * 109.46862 * 295.00425 * 16 13 11 45 45 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 46 46 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 47 47 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 48 48 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 49 49 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 50 50 H 1.08008 * 119.96708 * 179.71095 * 27 7 6 51 51 H 1.08004 * 120.02821 * 180.25196 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0011 6 6 5.2550 2.9852 0.0011 7 6 6.0962 1.8879 0.0000 8 6 7.5901 2.0854 -0.0005 9 6 8.0965 2.1514 1.4418 10 7 9.5489 2.3427 1.4412 11 6 10.2175 2.4308 2.6081 12 8 9.6168 2.3511 3.6587 13 6 11.7115 2.6282 2.6075 14 1 11.9848 3.3309 1.8203 15 7 12.1355 3.1617 3.9089 16 6 12.4032 1.2869 2.3564 17 6 13.9122 1.5065 2.2316 18 6 14.6037 0.1652 1.9798 19 6 16.0901 0.3815 1.8576 20 1 16.5004 1.3763 1.9498 21 6 16.9262 -0.6905 1.6280 22 7 16.4267 -1.9019 1.5162 23 14 18.7686 -0.4223 1.4758 24 1 19.3979 -0.5369 2.8161 25 1 19.3448 -1.4475 0.5692 26 1 19.0277 0.9307 0.9213 27 6 5.5689 0.6097 -0.0064 28 6 4.1998 0.4261 -0.0002 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2284 3.6643 0.0007 35 1 5.6692 3.9826 0.0012 36 1 7.8335 3.0156 -0.5139 37 1 8.0667 1.2510 -0.5151 38 1 7.8531 1.2212 1.9552 39 1 7.6199 2.9857 1.9563 40 1 10.0293 2.4068 0.6009 41 1 11.8932 2.5280 4.6557 42 1 13.1240 3.3635 3.9122 43 1 12.0223 0.8488 1.4338 44 1 12.2017 0.6128 3.1888 45 1 14.2931 1.9446 3.1542 46 1 14.1136 2.1807 1.3991 47 1 14.4024 -0.5093 2.8121 48 1 14.2228 -0.2725 1.0572 49 1 17.0149 -2.6562 1.3551 50 1 6.2282 -0.2458 -0.0119 51 1 3.7884 -0.5726 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345738764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:13 Heat of formation + Delta-G solvation = -106.132804 kcal Electronic energy + Delta-G solvation = -26988.753768 eV Core-core repulsion = 23078.956775 eV Total energy + Delta-G solvation = -3909.796992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20224 -40.87294 -38.91945 -37.45413 -36.28582 -35.24976 -33.51667 -32.97171 -32.30998 -31.80450 -29.65814 -28.78879 -26.80836 -25.09030 -24.66010 -23.61625 -22.90233 -21.94113 -21.80512 -21.04548 -19.25079 -18.48390 -18.40641 -17.29050 -17.10529 -17.04763 -16.53141 -16.34307 -16.31400 -15.95049 -15.84459 -15.38873 -15.18222 -14.71622 -14.55653 -14.43920 -14.31773 -14.23632 -14.13309 -13.62947 -13.56727 -13.40901 -13.36302 -12.90779 -12.67680 -12.57184 -12.52259 -12.46885 -12.38678 -12.33072 -12.23380 -11.64837 -11.58815 -11.48166 -11.41512 -11.25202 -10.75591 -10.55012 -10.10867 -9.95645 -9.65156 -9.06909 -8.19465 -6.30565 0.37783 0.40258 1.41406 1.41983 1.53070 1.62193 2.15025 2.25936 2.41659 2.77133 3.14198 3.69753 3.73858 3.80194 3.92574 4.00814 4.02182 4.02625 4.07255 4.11408 4.14466 4.21462 4.33827 4.41993 4.43531 4.47265 4.58056 4.61116 4.65756 4.78935 4.89280 4.91503 4.92722 5.03728 5.07749 5.12538 5.18705 5.20502 5.25524 5.31509 5.38798 5.46983 5.53430 5.67488 5.74750 5.83296 5.86388 6.07526 6.24964 6.44607 6.50167 6.57476 6.87468 7.26520 7.39274 8.92055 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.001521 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.242573 B =18409.548124 C =19276.737588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.335 6.335 4 C 0.111 3.889 5 C -0.165 4.165 6 C -0.076 4.076 7 C -0.126 4.126 8 C -0.076 4.076 9 C 0.128 3.872 10 N -0.718 5.718 11 C 0.520 3.480 12 O -0.577 6.577 13 C 0.085 3.915 14 H 0.125 0.875 15 N -0.834 5.834 16 C -0.134 4.134 17 C -0.095 4.095 18 C 0.022 3.978 19 C -0.542 4.542 20 H 0.063 0.937 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.260 1.260 27 C -0.081 4.081 28 C -0.214 4.214 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.417 0.583 41 H 0.344 0.656 42 H 0.356 0.644 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.065 0.935 47 H -0.016 1.016 48 H -0.007 1.007 49 H 0.262 0.738 50 H 0.137 0.863 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.980 7.991 -7.169 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.066 3.934 5 C -0.184 4.184 6 C -0.094 4.094 7 C -0.127 4.127 8 C -0.113 4.113 9 C 0.005 3.995 10 N -0.371 5.371 11 C 0.307 3.693 12 O -0.456 6.456 13 C -0.030 4.030 14 H 0.142 0.858 15 N -0.366 5.366 16 C -0.174 4.174 17 C -0.133 4.133 18 C -0.015 4.015 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.575 5.575 23 Si 0.788 3.212 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.184 1.184 27 C -0.099 4.099 28 C -0.233 4.233 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.002 0.998 48 H 0.012 0.988 49 H 0.071 0.929 50 H 0.155 0.845 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -30.044 8.516 -6.609 31.919 hybrid contribution 1.706 -1.591 -0.189 2.340 sum -28.338 6.925 -6.798 29.954 Atomic orbital electron populations 1.21805 0.91532 1.04133 1.03198 1.23029 0.96887 0.80882 1.02097 1.86048 1.19062 1.31139 1.88688 1.19253 0.82599 0.94743 0.96799 1.20657 0.95827 0.95105 1.06798 1.21136 0.91856 0.99674 0.96703 1.19727 0.95504 0.93259 1.04219 1.20647 0.90937 1.05053 0.94677 1.21290 0.79425 1.01015 0.97793 1.45888 1.08615 1.73833 1.08754 1.20851 0.90065 0.74816 0.83585 1.90650 1.70751 1.51147 1.33010 1.21395 0.89918 0.96555 0.95164 0.85756 1.58705 1.23452 1.50999 1.03405 1.22226 0.96388 0.96587 1.02210 1.21436 0.92690 0.98045 1.01083 1.19018 0.94508 0.93373 0.94585 1.21738 0.93641 0.94001 1.48593 0.91849 1.25976 1.04039 0.94920 0.94948 1.70098 1.37007 0.99727 1.50654 0.85479 0.79299 0.78345 0.78122 1.20057 1.20953 1.18439 1.21131 0.94566 0.97475 0.96769 1.21436 0.94436 0.98641 1.08780 0.91724 0.88329 0.91937 0.91173 0.91506 0.84541 0.83460 0.88349 0.89108 0.93129 0.92362 0.74616 0.84273 0.82785 0.90785 0.93604 0.92720 0.91612 0.99803 0.98823 0.92903 0.84507 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.05 0.51 5.46 71.98 0.39 0.91 16 3 O -0.33 -5.95 10.14 -92.45 -0.94 -6.88 16 4 C 0.11 2.03 6.69 22.51 0.15 2.18 16 5 C -0.17 -2.81 9.99 22.37 0.22 -2.58 16 6 C -0.08 -1.14 9.69 22.26 0.22 -0.92 16 7 C -0.13 -1.93 5.13 -19.85 -0.10 -2.03 16 8 C -0.08 -0.94 5.46 29.85 0.16 -0.78 16 9 C 0.13 2.39 5.66 86.38 0.49 2.88 16 10 N -0.72 -14.12 5.56 -463.06 -2.57 -16.69 16 11 C 0.52 14.34 7.08 87.66 0.62 14.96 16 12 O -0.58 -20.70 16.25 -3.05 -0.05 -20.75 16 13 C 0.08 2.18 3.21 44.17 0.14 2.32 16 14 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 15 N -0.83 -22.59 8.94 -171.81 -1.54 -24.12 16 16 C -0.13 -4.09 4.84 30.59 0.15 -3.95 16 17 C -0.09 -3.48 4.92 30.59 0.15 -3.33 16 18 C 0.02 1.13 4.97 29.85 0.15 1.28 16 19 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 20 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 21 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 22 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 23 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 27 C -0.08 -1.29 9.69 22.25 0.22 -1.07 16 28 C -0.21 -3.48 9.04 22.36 0.20 -3.28 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 33 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 34 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.10 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 5.69 8.47 -92.71 -0.79 4.91 16 41 H 0.34 10.04 8.58 -89.69 -0.77 9.27 16 42 H 0.36 8.85 7.55 -89.70 -0.68 8.17 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.93 6.87 -2.39 -0.02 1.92 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 49 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 51 H 0.14 1.75 6.30 -2.91 -0.02 1.73 16 Total: -1.00 -73.68 420.75 0.51 -73.17 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -1.30 Total: 29.00 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.59 Total: -23.13 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -3.82 Total: -96.86 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.99 Total: -27.64 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -73.68 0.51 -73.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345738764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.961 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds