Wall clock time and date at job start Tue Mar 31 2020 18:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.46856 * 2 1 4 4 C 1.46502 * 120.00130 * 269.99744 * 3 2 1 5 5 C 1.50710 * 109.47016 * 270.00094 * 4 3 2 6 6 H 1.07998 * 119.99668 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99933 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99474 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99895 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47166 * 90.00359 * 9 7 5 11 11 H 1.48505 * 109.46943 * 209.99780 * 9 7 5 12 12 H 1.48497 * 109.47248 * 329.99971 * 9 7 5 13 13 C 1.34783 * 120.00283 * 89.99524 * 3 2 1 14 14 O 1.21279 * 119.99932 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99770 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47105 * 179.97438 * 15 13 3 17 17 C 1.46904 * 110.99911 * 284.09749 * 16 15 13 18 18 C 1.53004 * 109.46981 * 162.15224 * 17 16 15 19 19 O 1.42896 * 109.47143 * 67.47034 * 18 17 16 20 20 C 1.46894 * 111.00210 * 160.13902 * 16 15 13 21 21 H 1.09005 * 109.47372 * 179.64496 * 20 16 15 22 22 C 1.52998 * 109.47485 * 299.64445 * 20 16 15 23 23 C 1.50699 * 109.47026 * 59.64279 * 20 16 15 24 24 C 1.38234 * 120.00398 * 292.33487 * 23 20 16 25 25 C 1.38231 * 120.00201 * 179.80985 * 24 23 20 26 26 C 1.38228 * 119.99938 * 0.39497 * 25 24 23 27 27 C 1.38238 * 120.00345 * 359.85331 * 26 25 24 28 28 C 1.38227 * 119.99666 * 359.96102 * 27 26 25 29 29 H 1.08997 * 109.47697 * 300.00416 * 1 2 3 30 30 H 1.09005 * 109.46970 * 60.00518 * 1 2 3 31 31 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47697 * 239.99584 * 2 1 3 33 33 H 1.09005 * 109.46970 * 119.99482 * 2 1 3 34 34 H 1.08996 * 109.47095 * 29.99438 * 4 3 2 35 35 H 1.08998 * 109.47257 * 150.00487 * 4 3 2 36 36 H 0.97000 * 119.99330 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47264 * 59.99735 * 15 13 3 38 38 H 1.08997 * 109.46550 * 299.99568 * 15 13 3 39 39 H 1.08996 * 109.47359 * 42.14854 * 17 16 15 40 40 H 1.08995 * 109.46771 * 282.14676 * 17 16 15 41 41 H 1.09008 * 109.47020 * 187.47055 * 18 17 16 42 42 H 1.09003 * 109.47363 * 307.46448 * 18 17 16 43 43 H 0.96708 * 113.99499 * 184.98759 * 19 18 17 44 44 H 1.08996 * 109.47685 * 180.02562 * 22 20 16 45 45 H 1.08997 * 109.46852 * 300.00078 * 22 20 16 46 46 H 1.08996 * 109.46957 * 59.99657 * 22 20 16 47 47 H 1.08004 * 119.99085 * 359.97438 * 24 23 20 48 48 H 1.08001 * 119.99737 * 180.22916 * 25 24 23 49 49 H 1.08001 * 119.99996 * 179.83530 * 26 25 24 50 50 H 1.08000 * 120.00179 * 179.97438 * 27 26 25 51 51 H 1.08007 * 119.99981 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0956 7 6 4.1492 2.3897 -2.8779 8 7 5.3914 2.1834 -3.2571 9 14 3.0129 3.4351 -3.9292 10 1 3.1164 4.8554 -3.5082 11 1 3.4059 3.3120 -5.3560 12 1 1.6132 2.9692 -3.7592 13 6 2.2427 2.0167 1.1672 14 8 2.6474 3.1600 1.1671 15 6 1.9921 1.3061 2.4723 16 7 2.3106 2.2060 3.5888 17 6 3.7634 2.3246 3.7714 18 6 4.0725 3.5674 4.6086 19 8 3.5891 3.3773 5.9398 20 6 1.6591 1.7594 4.8273 21 1 1.9167 2.4397 5.6392 22 6 0.1417 1.7511 4.6311 23 6 2.1289 0.3689 5.1689 24 6 1.7759 -0.6975 4.3632 25 6 2.2102 -1.9724 4.6743 26 6 2.9907 -2.1822 5.7957 27 6 3.3396 -1.1166 6.6043 28 6 2.9085 0.1588 6.2910 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 5.7173 2.5733 -4.0834 37 1 2.6226 0.4189 2.5300 38 1 0.9442 1.0116 2.5301 39 1 4.2459 2.4129 2.7981 40 1 4.1386 1.4388 4.2839 41 1 5.1500 3.7303 4.6330 42 1 3.5839 4.4350 4.1650 43 1 3.6823 4.1551 6.5069 44 1 -0.3418 1.4202 5.5502 45 1 -0.1981 2.7568 4.3840 46 1 -0.1159 1.0709 3.8193 47 1 1.1629 -0.5340 3.4891 48 1 1.9374 -2.8049 4.0427 49 1 3.3278 -3.1787 6.0403 50 1 3.9491 -1.2807 7.4807 51 1 3.1807 0.9913 6.9230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363777644.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:18 Heat of formation + Delta-G solvation = -62.452680 kcal Electronic energy + Delta-G solvation = -30822.400605 eV Core-core repulsion = 26914.497725 eV Total energy + Delta-G solvation = -3907.902880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.51701 -40.24256 -38.51386 -37.08124 -36.78934 -34.85590 -33.20025 -32.12895 -31.78032 -30.80265 -30.24347 -29.22275 -27.24637 -24.65481 -24.28094 -23.71095 -23.18801 -22.90092 -20.88146 -19.85985 -19.10217 -18.41234 -18.16890 -17.61121 -17.26301 -16.82179 -16.63084 -16.22588 -15.74438 -15.70303 -15.55197 -15.10416 -14.77902 -14.73600 -14.47891 -14.38149 -14.30591 -14.13952 -13.73147 -13.64182 -13.43558 -13.18633 -13.15231 -12.93313 -12.88121 -12.56290 -12.53793 -12.38079 -12.34124 -12.03423 -11.96998 -11.88002 -11.79414 -11.73976 -11.52571 -10.83056 -10.68425 -10.56969 -9.74250 -9.61292 -9.36484 -9.22881 -8.34035 -6.38536 0.47628 0.56308 1.31898 1.36072 1.44468 1.86141 2.21733 2.30795 2.87945 3.00614 3.05405 3.40308 3.69716 3.84943 3.98190 4.02876 4.10969 4.16135 4.23716 4.28159 4.33275 4.35557 4.41630 4.45054 4.49702 4.61554 4.65329 4.68552 4.75869 4.80424 4.86879 4.91340 4.93910 4.97246 4.99834 5.01381 5.16345 5.21241 5.31090 5.32661 5.38707 5.47580 5.62631 5.67828 5.68187 5.72247 6.01309 6.17159 6.18781 6.26375 6.62370 6.77248 6.95354 7.22755 7.51058 8.83061 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.003628 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.693479 B = 7716.418162 C = 8377.121849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.533 4.533 6 H 0.026 0.974 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.239 1.239 13 C 0.498 3.502 14 O -0.573 6.573 15 C 0.044 3.956 16 N -0.510 5.510 17 C 0.060 3.940 18 C 0.097 3.903 19 O -0.570 6.570 20 C 0.113 3.887 21 H 0.123 0.877 22 C -0.142 4.142 23 C -0.118 4.118 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.111 4.111 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.268 0.732 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.393 0.607 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.128 0.872 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 -7.114 21.103 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.572 4.572 6 H 0.044 0.956 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.286 3.714 14 O -0.452 6.452 15 C -0.087 4.087 16 N -0.233 5.233 17 C -0.068 4.068 18 C 0.019 3.981 19 O -0.379 6.379 20 C 0.006 3.994 21 H 0.141 0.859 22 C -0.199 4.199 23 C -0.120 4.120 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.148 4.148 27 C -0.150 4.150 28 C -0.130 4.130 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.243 0.757 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.146 0.854 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.153 0.847 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.413 -6.587 20.600 24.454 hybrid contribution 0.998 0.309 -0.691 1.253 sum -10.415 -6.278 19.909 23.329 Atomic orbital electron populations 1.22169 0.93775 1.03732 1.02188 1.21736 0.95781 0.81364 1.03531 1.48056 1.64717 1.15018 1.05771 1.19244 0.94652 0.92940 0.82585 1.21557 0.97070 1.31940 1.06584 0.95557 1.25828 0.96672 0.97161 0.98928 1.70054 1.17408 1.46688 1.24474 0.85726 0.80496 0.79015 0.77784 1.20249 1.19980 1.16191 1.21223 0.77214 0.86772 0.86185 1.90610 1.46667 1.20186 1.87761 1.22291 1.03906 0.94153 0.88324 1.62009 1.09532 1.47982 1.03782 1.22040 0.88428 0.97903 0.98393 1.21892 0.97216 0.96500 0.82535 1.86358 1.85552 1.43325 1.22671 1.21220 0.94551 0.91592 0.92067 0.85945 1.21940 0.93335 1.02324 1.02348 1.20718 0.98825 0.96468 0.96010 1.21459 1.00811 0.92928 0.99930 1.21420 0.98350 0.97248 0.97774 1.21446 0.98374 0.99817 0.95192 1.21439 1.00307 0.92812 1.00463 1.21309 0.97179 0.97550 0.96917 0.92073 0.93267 0.88596 0.90961 0.89464 0.93552 0.96545 0.92320 0.91412 0.85564 0.92866 0.93927 0.92660 0.93605 0.75726 0.90578 0.92120 0.92344 0.85407 0.84457 0.84453 0.84660 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.60 -24.91 2.46 -826.15 -2.03 -26.94 16 4 C 0.23 11.33 4.23 85.64 0.36 11.69 16 5 C -0.53 -31.84 9.94 25.60 0.25 -31.59 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 7 C 0.01 0.71 5.47 84.65 0.46 1.18 16 8 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 9 Si 0.95 45.13 27.47 68.60 1.88 47.02 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 13 C 0.50 20.76 7.26 87.66 0.64 21.39 16 14 O -0.57 -29.29 14.94 -3.03 -0.05 -29.34 16 15 C 0.04 1.32 2.08 85.56 0.18 1.50 16 16 N -0.51 -15.15 4.00 -879.95 -3.52 -18.67 16 17 C 0.06 1.90 4.95 86.30 0.43 2.33 16 18 C 0.10 2.48 7.34 71.98 0.53 3.01 16 19 O -0.57 -11.12 10.25 -148.98 -1.53 -12.65 16 20 C 0.11 2.62 2.50 44.17 0.11 2.73 16 21 H 0.12 2.87 4.97 -2.38 -0.01 2.85 16 22 C -0.14 -2.81 8.77 71.98 0.63 -2.18 16 23 C -0.12 -2.64 3.60 -19.86 -0.07 -2.71 16 24 C -0.13 -2.79 7.13 22.27 0.16 -2.63 16 25 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 26 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 27 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 28 C -0.11 -2.35 9.21 22.27 0.21 -2.15 16 29 H 0.06 1.24 7.22 -2.39 -0.02 1.23 16 30 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 33 H 0.09 2.19 6.44 -2.38 -0.02 2.17 16 34 H 0.05 2.12 7.13 -2.39 -0.02 2.11 16 35 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 36 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.07 2.02 5.58 -2.39 -0.01 2.01 16 38 H 0.13 3.10 3.67 -2.39 -0.01 3.10 16 39 H 0.05 2.10 6.76 -2.39 -0.02 2.08 16 40 H 0.04 1.31 6.50 -2.39 -0.02 1.29 16 41 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.39 4.12 9.12 -74.05 -0.68 3.44 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 1.09 5.19 -2.39 -0.01 1.07 16 47 H 0.13 2.43 4.94 -2.91 -0.01 2.42 16 48 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 49 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 50 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 51 H 0.13 2.59 7.51 -2.91 -0.02 2.57 16 Total: -1.00 -79.32 391.94 1.08 -78.25 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.21 Total: 25.94 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.80 Total: -3.44 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -5.25 Total: -105.78 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.57 Total: -41.98 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -79.32 1.08 -78.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363777644.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.793 kcal (2) G-P(sol) polarization free energy of solvation -79.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds