Wall clock time and date at job start Tue Mar 31 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47568 * 2 1 4 4 C 1.36939 * 119.99855 * 275.31115 * 3 2 1 5 5 H 1.08001 * 120.00123 * 37.56922 * 4 3 2 6 6 C 1.38807 * 119.99912 * 217.57575 * 4 3 2 7 7 N 1.31624 * 120.00208 * 21.42289 * 6 4 3 8 8 Si 1.86796 * 120.00086 * 201.42099 * 6 4 3 9 9 H 1.48500 * 109.47150 * 59.99867 * 8 6 4 10 10 H 1.48501 * 109.47583 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47372 * 299.99929 * 8 6 4 12 12 C 1.46491 * 120.00040 * 95.30445 * 3 2 1 13 13 C 1.52999 * 109.47464 * 270.00263 * 12 3 2 14 14 N 1.46501 * 109.47472 * 179.97438 * 13 12 3 15 15 C 1.34777 * 120.00012 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99870 * 359.72717 * 15 14 13 17 17 C 1.50704 * 119.99930 * 180.02562 * 15 14 13 18 18 H 1.08999 * 109.46682 * 54.72681 * 17 15 14 19 19 C 1.52996 * 109.46970 * 294.73002 * 17 15 14 20 20 O 1.42897 * 109.47083 * 174.72899 * 17 15 14 21 21 C 1.42904 * 113.99680 * 210.00149 * 20 17 15 22 22 C 1.50699 * 109.46963 * 179.97438 * 21 20 17 23 23 C 1.38238 * 120.00142 * 269.72529 * 22 21 20 24 24 C 1.38231 * 120.00211 * 179.78751 * 23 22 21 25 25 C 1.38240 * 119.99724 * 0.46420 * 24 23 22 26 26 C 1.50696 * 119.99672 * 179.79075 * 25 24 23 27 27 C 1.38233 * 120.00142 * 359.76340 * 25 24 23 28 28 C 1.38234 * 120.00028 * 89.99925 * 22 21 20 29 29 H 1.08994 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47228 * 300.00420 * 1 2 3 31 31 H 1.08998 * 109.46775 * 60.00382 * 1 2 3 32 32 H 1.09001 * 109.47228 * 239.99580 * 2 1 3 33 33 H 1.09000 * 109.47275 * 119.99711 * 2 1 3 34 34 H 0.96998 * 120.00346 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46964 * 150.00178 * 12 3 2 36 36 H 1.09002 * 109.47396 * 30.00245 * 12 3 2 37 37 H 1.09002 * 109.47100 * 59.99998 * 13 12 3 38 38 H 1.09005 * 109.47244 * 300.00595 * 13 12 3 39 39 H 0.97004 * 119.99850 * 0.02562 * 14 13 12 40 40 H 1.09000 * 109.47310 * 180.02562 * 19 17 15 41 41 H 1.09007 * 109.47210 * 300.00019 * 19 17 15 42 42 H 1.09001 * 109.47550 * 59.99600 * 19 17 15 43 43 H 1.08996 * 109.47005 * 300.00050 * 21 20 17 44 44 H 1.09002 * 109.47461 * 59.99950 * 21 20 17 45 45 H 1.08004 * 119.99686 * 359.97438 * 23 22 21 46 46 H 1.07992 * 120.00144 * 180.25197 * 24 23 22 47 47 H 1.09004 * 109.47077 * 269.97336 * 26 25 24 48 48 H 1.08997 * 109.47531 * 29.98099 * 26 25 24 49 49 H 1.09009 * 109.47088 * 149.97749 * 26 25 24 50 50 H 1.07997 * 120.00350 * 179.97438 * 27 25 24 51 51 H 1.08001 * 120.00037 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4107 1.9277 -1.9628 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7980 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9630 5.1784 -2.3347 10 1 4.3625 5.0605 -2.6671 11 1 2.8847 3.6723 -3.9967 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7383 1.8365 14 7 1.4973 3.3893 3.1001 15 6 0.5649 4.0767 3.7889 16 8 -0.5665 4.1606 3.3602 17 6 0.9299 4.7469 5.0884 18 1 1.7808 5.4091 4.9292 19 6 1.2982 3.6833 6.1248 20 8 -0.1837 5.5074 5.5614 21 6 0.1812 6.6579 6.3264 22 6 -1.0639 7.3812 6.7709 23 6 -1.6072 8.3740 5.9771 24 6 -2.7518 9.0344 6.3827 25 6 -3.3478 8.7085 7.5867 26 6 -4.5930 9.4317 8.0311 27 6 -2.8019 7.7189 8.3827 28 6 -1.6597 7.0556 7.9750 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.0493 3.4026 -0.7835 35 1 3.1617 2.7640 1.0859 36 1 2.7254 1.2833 1.9721 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4876 1.1275 39 1 2.4034 3.3261 3.4406 40 1 1.5617 4.1680 7.0649 41 1 0.4472 3.0210 6.2840 42 1 2.1475 3.1032 5.7640 43 1 0.7527 6.3466 7.2007 44 1 0.7887 7.3241 5.7136 45 1 -1.1389 8.6317 5.0386 46 1 -3.1785 9.8072 5.7607 47 1 -4.3147 10.3089 8.6154 48 1 -5.1637 9.7436 7.1565 49 1 -5.2012 8.7655 8.6432 50 1 -3.2673 7.4645 9.3235 51 1 -1.2330 6.2827 8.5971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480991880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:28 Heat of formation + Delta-G solvation = -48.643314 kcal Electronic energy + Delta-G solvation = -28218.134565 eV Core-core repulsion = 24310.830504 eV Total energy + Delta-G solvation = -3907.304061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.92482 -39.41227 -37.56944 -36.24286 -34.08611 -33.65526 -31.89444 -31.53561 -31.13582 -29.48372 -28.55834 -27.47089 -25.05709 -24.42242 -23.63112 -22.93125 -21.68568 -21.03835 -20.40632 -19.92035 -17.45518 -17.06541 -16.58688 -16.12578 -16.01402 -15.37064 -15.26639 -15.00947 -14.91068 -14.42611 -14.04798 -13.98105 -13.75056 -13.62114 -13.59295 -13.23226 -12.99798 -12.79584 -12.52918 -12.38409 -12.33945 -12.18988 -12.11453 -11.98812 -11.52812 -11.49690 -11.18027 -11.12033 -11.08063 -10.75564 -10.64027 -10.53306 -10.09043 -9.98762 -9.88114 -9.79570 -9.24817 -9.10865 -8.79958 -8.57255 -8.44118 -6.63258 -5.84788 -3.43237 1.02182 1.22031 2.95112 3.03421 3.35670 3.40675 3.45433 3.57886 4.07926 4.45563 4.53969 4.56418 4.70022 4.80041 4.80569 4.86775 4.93752 5.03750 5.10086 5.22975 5.27172 5.28263 5.30078 5.46076 5.50322 5.51922 5.53953 5.57367 5.85449 5.86393 5.96396 5.99784 6.11575 6.17124 6.18597 6.36709 6.38833 6.40525 6.42439 6.51098 6.69123 6.78592 6.86096 6.91635 6.96826 7.04910 7.17041 7.53231 7.79305 7.93475 8.47066 8.61249 9.13692 9.75575 10.33615 11.15339 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.002143 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.363327 B =13060.559004 C =13657.542850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.260 4.260 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.099 3.901 14 N -0.718 5.718 15 C 0.507 3.493 16 O -0.526 6.526 17 C 0.069 3.931 18 H 0.085 0.915 19 C -0.169 4.169 20 O -0.349 6.349 21 C 0.100 3.900 22 C -0.093 4.093 23 C -0.091 4.091 24 C -0.124 4.124 25 C -0.083 4.083 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.094 4.094 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.029 0.971 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.396 0.604 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 9.297 20.347 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.011 3.989 13 C -0.026 4.026 14 N -0.371 5.371 15 C 0.291 3.709 16 O -0.402 6.402 17 C 0.007 3.993 18 H 0.103 0.897 19 C -0.227 4.227 20 O -0.267 6.267 21 C 0.023 3.977 22 C -0.093 4.093 23 C -0.109 4.109 24 C -0.142 4.142 25 C -0.083 4.083 26 C -0.172 4.172 27 C -0.144 4.144 28 C -0.112 4.112 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.401 9.360 19.944 23.579 hybrid contribution 0.648 0.795 -0.456 1.122 sum -7.753 10.155 19.488 23.302 Atomic orbital electron populations 1.22391 0.99900 0.99090 1.01432 1.20881 0.91769 0.86956 0.98891 1.43601 1.76038 1.08291 1.02068 1.18981 1.04740 1.21294 0.93970 0.92125 1.25182 0.94156 1.01220 0.98171 1.69986 1.03121 1.37364 1.42559 0.86462 0.76955 0.82321 0.81638 1.20764 1.21595 1.20602 1.21054 0.94538 0.96930 0.86428 1.22479 1.01113 0.96520 0.82535 1.46072 1.12892 1.53570 1.24581 1.20270 0.85841 0.79576 0.85210 1.90709 1.20482 1.59821 1.69139 1.21961 0.90159 0.94146 0.93029 0.89732 1.22220 1.02757 0.98984 0.98700 1.88149 1.29716 1.38338 1.70529 1.21413 0.93994 0.87189 0.95082 1.19540 0.97474 0.97053 0.95211 1.21097 0.95607 0.95398 0.98790 1.21031 0.96209 1.00582 0.96380 1.19973 0.96948 0.96657 0.94762 1.20805 0.94622 0.99954 1.01779 1.20998 0.96582 0.96901 0.99909 1.21030 0.95452 0.98679 0.96019 0.94447 0.93655 0.93103 0.93566 0.94728 0.93486 0.88407 0.95296 0.92988 0.91762 0.77038 0.91514 0.91122 0.90692 0.92308 0.92282 0.85781 0.85922 0.91179 0.91466 0.91516 0.86006 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.21 37.16 0.38 -2.78 16 2 C 0.14 2.96 6.44 -4.04 -0.03 2.93 16 3 N -0.58 -14.05 2.43 -173.24 -0.42 -14.47 16 4 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 5 H 0.06 1.64 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -24.57 11.47 55.49 0.64 -23.93 16 8 Si 0.90 21.39 29.60 -169.99 -5.03 16.36 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.14 3.04 5.45 -4.05 -0.02 3.02 16 13 C 0.10 2.02 6.00 -4.04 -0.02 1.99 16 14 N -0.72 -12.00 5.52 -60.29 -0.33 -12.33 16 15 C 0.51 8.86 7.18 -10.98 -0.08 8.78 16 16 O -0.53 -11.77 16.51 -14.30 -0.24 -12.01 16 17 C 0.07 0.89 3.13 -27.88 -0.09 0.80 16 18 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 19 C -0.17 -1.69 9.48 37.16 0.35 -1.34 16 20 O -0.35 -5.08 9.51 -55.09 -0.52 -5.61 16 21 C 0.10 1.08 5.87 36.01 0.21 1.29 16 22 C -0.09 -1.05 5.51 -104.62 -0.58 -1.63 16 23 C -0.09 -1.02 9.70 -39.58 -0.38 -1.40 16 24 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 25 C -0.08 -0.78 5.88 -104.62 -0.62 -1.39 16 26 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 27 C -0.13 -1.18 9.70 -39.58 -0.38 -1.56 16 28 C -0.09 -0.95 9.70 -39.58 -0.38 -1.34 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.86 6.64 -51.93 -0.34 0.52 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16 36 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 37 H 0.05 1.10 6.64 -51.93 -0.34 0.75 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.40 5.40 8.28 -40.82 -0.34 5.06 16 40 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 41 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.07 0.65 7.95 -51.93 -0.41 0.23 16 43 H 0.06 0.50 7.81 -51.93 -0.41 0.09 16 44 H 0.06 0.57 8.03 -51.93 -0.42 0.16 16 45 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 49 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 420.37 15.07 6.33 6.33 Total: -1.00 -33.11 420.37 -10.26 -43.37 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.79 Total: 3.79 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.89 Total: -1.51 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.12 Total: -50.73 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.76 Total: -17.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.11 -10.26 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480991880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.274 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds