Wall clock time and date at job start Tue Mar 31 2020 19:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46962 * 2 1 4 4 C 1.36935 * 120.00275 * 264.29231 * 3 2 1 5 5 H 1.07994 * 120.00095 * 188.64388 * 4 3 2 6 6 C 1.38815 * 119.99668 * 8.63671 * 4 3 2 7 7 N 1.31618 * 120.00361 * 24.60464 * 6 4 3 8 8 Si 1.86805 * 119.99749 * 204.60602 * 6 4 3 9 9 H 1.48499 * 109.47154 * 85.02624 * 8 6 4 10 10 H 1.48498 * 109.47072 * 205.02923 * 8 6 4 11 11 H 1.48500 * 109.47110 * 325.02291 * 8 6 4 12 12 C 1.46494 * 119.99737 * 84.28899 * 3 2 1 13 13 C 1.53002 * 109.47530 * 269.99956 * 12 3 2 14 14 N 1.46494 * 109.47338 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99965 * 180.02562 * 14 13 12 16 16 O 1.21273 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99820 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.47201 * 304.99650 * 17 15 14 19 19 C 1.52997 * 109.47250 * 64.99827 * 17 15 14 20 20 O 1.42906 * 109.46768 * 184.99885 * 17 15 14 21 21 C 1.42901 * 113.99522 * 149.99714 * 20 17 15 22 22 C 1.50702 * 109.46665 * 179.97438 * 21 20 17 23 23 C 1.38264 * 120.00316 * 269.98022 * 22 21 20 24 24 C 1.38206 * 120.00090 * 180.02562 * 23 22 21 25 25 C 1.38266 * 120.00054 * 359.74649 * 24 23 22 26 26 C 1.38216 * 119.99513 * 0.52745 * 25 24 23 27 27 C 1.50697 * 119.99524 * 179.74126 * 26 25 24 28 28 C 1.38217 * 120.00062 * 90.00268 * 22 21 20 29 29 H 1.09004 * 109.46922 * 59.99955 * 1 2 3 30 30 H 1.09004 * 109.46797 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47245 * 299.99933 * 1 2 3 32 32 H 1.09006 * 109.47232 * 240.00731 * 2 1 3 33 33 H 1.08992 * 109.47281 * 120.00063 * 2 1 3 34 34 H 0.96997 * 120.00347 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47344 * 150.00040 * 12 3 2 36 36 H 1.09003 * 109.47626 * 30.00292 * 12 3 2 37 37 H 1.09001 * 109.46588 * 60.00230 * 13 12 3 38 38 H 1.08995 * 109.46897 * 300.00435 * 13 12 3 39 39 H 0.96998 * 120.00152 * 359.97438 * 14 13 12 40 40 H 1.09001 * 109.47296 * 299.99526 * 19 17 15 41 41 H 1.08996 * 109.47420 * 59.99932 * 19 17 15 42 42 H 1.08996 * 109.46850 * 179.97438 * 19 17 15 43 43 H 1.09004 * 109.47050 * 60.00185 * 21 20 17 44 44 H 1.08993 * 109.47811 * 299.99744 * 21 20 17 45 45 H 1.08004 * 119.99740 * 359.97438 * 23 22 21 46 46 H 1.07997 * 120.00213 * 179.97438 * 24 23 22 47 47 H 1.07993 * 120.00144 * 180.27062 * 25 24 23 48 48 H 1.09004 * 109.47454 * 269.72698 * 27 26 25 49 49 H 1.08997 * 109.47413 * 29.73179 * 27 26 25 50 50 H 1.09000 * 109.47244 * 149.73031 * 27 26 25 51 51 H 1.07997 * 119.99341 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9875 -1.1800 5 1 2.8470 2.9503 -1.1713 6 6 2.0731 1.3645 -2.3874 7 7 1.0959 0.4858 -2.4602 8 14 3.0770 1.7733 -3.9088 9 1 4.3046 0.9380 -3.9309 10 1 2.2688 1.4979 -5.1238 11 1 3.4555 3.2090 -3.8811 12 6 2.1434 2.1139 1.2624 13 6 0.8337 2.8474 1.5585 14 7 0.9591 3.5805 2.8206 15 6 -0.0785 4.3043 3.2854 16 8 -1.1157 4.3491 2.6585 17 6 0.0503 5.0580 4.5840 18 1 0.3521 4.3708 5.3746 19 6 1.1041 6.1569 4.4336 20 8 -1.2078 5.6470 4.9196 21 6 -1.4297 5.7824 6.3248 22 6 -2.7783 6.4117 6.5619 23 6 -2.8944 7.7869 6.6458 24 6 -4.1312 8.3640 6.8638 25 6 -5.2532 7.5664 6.9928 26 6 -5.1362 6.1914 6.9145 27 6 -6.3582 5.3218 7.0609 28 6 -3.8992 5.6142 6.6960 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.8967 0.0508 -3.3040 35 1 2.9551 2.8372 1.1839 36 1 2.3579 1.4133 2.0695 37 1 0.0221 2.1241 1.6370 38 1 0.6193 3.5480 0.7515 39 1 1.7885 3.5444 3.3221 40 1 2.0636 5.7076 4.1777 41 1 0.8023 6.8441 3.6432 42 1 1.1968 6.7023 5.3728 43 1 -0.6533 6.4144 6.7560 44 1 -1.3998 4.7990 6.7938 45 1 -2.0185 8.4101 6.5418 46 1 -4.2218 9.4381 6.9298 47 1 -6.2202 8.0175 7.1588 48 1 -6.4967 5.0634 8.1108 49 1 -7.2339 5.8620 6.7011 50 1 -6.2280 4.4108 6.4767 51 1 -3.8084 4.5400 6.6304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480992272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:37 Heat of formation + Delta-G solvation = -35.570380 kcal Electronic energy + Delta-G solvation = -28185.094157 eV Core-core repulsion = 24278.356981 eV Total energy + Delta-G solvation = -3906.737176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.98858 -39.47230 -37.63086 -36.34882 -34.28132 -33.44040 -32.29937 -31.50599 -30.84597 -29.55279 -27.53408 -27.30327 -26.40648 -24.54055 -23.56022 -22.35072 -21.67161 -20.95172 -20.51071 -19.89916 -17.37059 -17.13648 -16.77693 -16.57514 -16.09797 -15.49838 -15.12332 -15.10000 -14.73702 -14.52141 -14.13450 -13.99327 -13.73706 -13.49834 -13.36089 -13.26241 -13.01397 -12.75087 -12.51443 -12.42975 -12.24472 -12.14473 -12.01687 -11.85194 -11.58458 -11.39852 -11.26067 -11.09287 -11.06287 -10.77532 -10.52482 -10.33356 -10.05877 -9.91153 -9.73046 -9.42150 -9.30858 -9.07172 -8.86241 -8.59438 -8.37209 -6.94005 -5.77230 -3.10120 1.01984 1.16834 2.86528 2.96971 3.40129 3.46995 3.48242 3.53318 4.00219 4.48259 4.49698 4.54003 4.63904 4.72996 4.82772 4.86754 4.90994 5.00476 5.02524 5.14151 5.26770 5.32293 5.33707 5.39371 5.42961 5.50496 5.55942 5.57065 5.80364 5.84861 5.89460 5.91902 5.94462 6.21040 6.25100 6.32280 6.37310 6.54417 6.65945 6.71454 6.75869 6.84067 6.93859 6.96549 7.12444 7.17549 7.66415 7.77753 7.81043 8.12906 8.34738 8.52796 9.22572 9.84134 10.28312 11.26350 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.001953 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.141886 B =14331.927906 C =14850.732293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 N -0.591 5.591 4 C -0.254 4.254 5 H 0.075 0.925 6 C -0.001 4.001 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.144 3.856 13 C 0.091 3.909 14 N -0.723 5.723 15 C 0.506 3.494 16 O -0.520 6.520 17 C 0.070 3.930 18 H 0.084 0.916 19 C -0.169 4.169 20 O -0.348 6.348 21 C 0.100 3.900 22 C -0.084 4.084 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.091 4.091 27 C -0.115 4.115 28 C -0.095 4.095 29 H 0.091 0.909 30 H 0.020 0.980 31 H 0.014 0.986 32 H 0.089 0.911 33 H 0.003 0.997 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.394 0.606 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 11.228 23.664 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 N -0.312 5.312 4 C -0.383 4.383 5 H 0.093 0.907 6 C -0.199 4.199 7 N -0.539 5.539 8 Si 0.730 3.270 9 H -0.216 1.216 10 H -0.219 1.219 11 H -0.207 1.207 12 C 0.015 3.985 13 C -0.034 4.034 14 N -0.377 5.377 15 C 0.290 3.710 16 O -0.395 6.395 17 C 0.008 3.992 18 H 0.102 0.898 19 C -0.227 4.227 20 O -0.267 6.267 21 C 0.023 3.977 22 C -0.084 4.084 23 C -0.121 4.121 24 C -0.139 4.139 25 C -0.134 4.134 26 C -0.091 4.091 27 C -0.172 4.172 28 C -0.113 4.113 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.227 0.773 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.596 11.196 22.867 26.302 hybrid contribution 0.887 0.202 -0.437 1.009 sum -5.710 11.398 22.430 25.800 Atomic orbital electron populations 1.22441 0.99156 0.98314 1.01302 1.20854 0.92547 0.84195 0.98295 1.44247 1.75525 1.10076 1.01351 1.19279 1.31699 1.03880 0.83445 0.90739 1.24758 0.97784 0.99939 0.97420 1.70161 1.27041 1.31713 1.25009 0.86331 0.80180 0.77856 0.82656 1.21577 1.21934 1.20737 1.20950 0.93647 0.94401 0.89473 1.22746 1.02135 0.95403 0.83162 1.46141 1.15511 1.50277 1.25748 1.20306 0.84293 0.79760 0.86670 1.90738 1.28408 1.61775 1.58533 1.21961 0.85895 0.95258 0.96092 0.89844 1.22223 0.97993 0.99102 1.03408 1.88168 1.35100 1.81587 1.21812 1.21416 0.93883 0.99378 0.82976 1.19534 0.94302 0.93738 1.00868 1.21030 0.97875 0.94038 0.99204 1.21110 0.92587 0.99807 1.00395 1.21075 0.98670 0.93149 1.00478 1.19924 0.95149 0.94262 0.99719 1.20800 0.94988 0.99180 1.02199 1.20972 0.91566 0.99907 0.98883 0.89059 0.96138 0.96715 0.89287 0.97848 0.93699 0.93209 0.93917 0.91606 0.91503 0.77311 0.90749 0.90993 0.91493 0.92270 0.92313 0.85981 0.85920 0.86089 0.91200 0.91491 0.91299 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.58 37.16 0.36 -3.24 16 2 C 0.17 3.96 5.64 -4.04 -0.02 3.94 16 3 N -0.59 -14.24 2.54 -173.24 -0.44 -14.68 16 4 C -0.25 -6.76 9.70 -15.06 -0.15 -6.90 16 5 H 0.07 1.95 7.93 -52.49 -0.42 1.53 16 6 C 0.00 -0.04 4.91 -17.43 -0.09 -0.12 16 7 N -0.89 -24.95 8.54 55.49 0.47 -24.48 16 8 Si 0.90 21.50 29.62 -169.99 -5.03 16.46 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.14 2.76 5.82 -4.04 -0.02 2.74 16 13 C 0.09 1.75 5.88 -4.04 -0.02 1.73 16 14 N -0.72 -10.77 5.52 -60.30 -0.33 -11.10 16 15 C 0.51 8.30 7.18 -10.98 -0.08 8.22 16 16 O -0.52 -11.40 16.51 -14.30 -0.24 -11.64 16 17 C 0.07 0.82 3.13 -27.88 -0.09 0.73 16 18 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 19 C -0.17 -1.57 9.48 37.16 0.35 -1.22 16 20 O -0.35 -4.82 9.51 -55.09 -0.52 -5.35 16 21 C 0.10 1.00 5.87 36.01 0.21 1.21 16 22 C -0.08 -0.92 5.51 -104.62 -0.58 -1.49 16 23 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 26 C -0.09 -0.88 5.88 -104.63 -0.62 -1.49 16 27 C -0.12 -0.85 10.01 36.00 0.36 -0.49 16 28 C -0.10 -1.02 9.36 -39.59 -0.37 -1.39 16 29 H 0.09 2.46 6.28 -51.93 -0.33 2.13 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.32 5.98 -51.93 -0.31 0.01 16 32 H 0.09 2.36 5.87 -51.93 -0.31 2.05 16 33 H 0.00 0.07 7.97 -51.93 -0.41 -0.34 16 34 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 36 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 37 H 0.07 1.42 5.93 -51.93 -0.31 1.11 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.39 4.31 8.26 -40.82 -0.34 3.97 16 40 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 43 H 0.06 0.46 7.81 -51.93 -0.41 0.05 16 44 H 0.06 0.51 8.03 -51.93 -0.42 0.09 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 50 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 51 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 413.86 15.07 6.24 6.24 Total: -1.00 -33.42 413.86 -10.42 -43.84 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.65 Total: 2.79 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.92 Total: -2.08 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.30 Total: -50.26 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.76 Total: -16.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.42 -10.42 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480992272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.273 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds